Science Packages

Science related packages

To install Raspbian software on a Raspberry Pi

Packages are installed using LXterminal. First get an updated package list by entering the following command in to LXterminal if this has not been done today sudo apt-get update
Then install your chosen package with the command sudo apt-get install package name Find out more with the Guide to installing software with the apt-get command

Rate a Raspberry Pi software package from this list

Let other users know how well packages work on the Raspberry Pi.
Rating Key:
Working, Not Working, 1 Like, 1 Dislike, 1 Neutral, 1 View Comments
Speed-Slow, Speed-Usable, Speed Good

WWW: Please Note: each listing has a www link to a related webpage, the links are supplied by the author. I can't guarantee thay are all active and related to the listed package.

SCIENCE

Jump to section a b c d e f g h i j k l m n o p q r s t u v w x y z
  • 3depict

    0.0.16-2.1 visualisation and analysis for single valued point data www
  • Back to top
  • A

  • Rate It
  • abacas

    1.3.1-2 Algorithm Based Automatic Contiguation of Assembled Sequences www
  • abinit

    7.8.2-2 package for electronic structure calculations www
  • acedb-other-belvu

    4.9.39+dfsg.01-5 multiple sequence alignment editor www
  • acedb-other-dotter

    4.9.39+dfsg.01-5 visualisation of sequence similarity www
  • acedb-other

    4.9.39+dfsg.01-5 retrieval of DNA or protein sequences www
  • aces3-data

    3.0.8-4 Advanced Concepts in Electronic Structure III www
  • aces3

    3.0.8-4 Advanced Concepts in Electronic Structure III www
  • achilles

    2-8 An artificial life and evolution simulator
  • aeskulap

    0.2.2b1-13 medical image viewer and DICOM network client www
  • aevol

    4.4-1 digital genetics model to run Evolution Experiments in silico www
  • aghermann

    1.0.2-1 Sleep-research experiment manager www
  • algotutor

    0.8.6-1 program for observing the intermediate steps of algorithm www
  • alien-hunter

    1.7-3 Interpolated Variable Order Motifs to identify horizontally acquired DNA www
  • altree-examples

    1.3.1-2 example files for ALTree www
  • altree

    1.3.1-2+b1 program to perform phylogeny-based association and localization analysis www
  • amap-align

    2.2-4 Protein multiple alignment by sequence annealing
  • ampliconnoise

    1.29-2 removal of noise from 454 sequenced PCR amplicons www
  • anfo

    0.98-4+b1 Short Read Aligner/Mapper from MPG www
  • ants

    1.9.2+svn680.dfsg-4 advanced normalization tools for brain and image analysis www
  • apbs

    1.4-1 Adaptive Poisson Boltzmann Solver www
  • aragorn

    1.2.36-4 tRNA and tmRNA detection in nucleotide sequences www
  • arden

    1.0-1 specificity control for read alignments using an artificial reference www
  • ask

    1.0.1-2 Adaptive Sampling Kit for big experimental spaces www
  • astronomical-almanac

    5.6-4 astronomical almanac - calculate planet and star positions www
  • autodock-getdata

    4.2.6-2 instructions for getData to collect compounds www
  • autodock-test

    4.2.6-2 test files for AutoDock www
  • autodock-vina

    1.1.2-3 docking of small molecules to proteins www
  • autodock

    4.2.6-2 analysis of ligand binding to protein structure www
  • autogrid-test

    4.2.6-2 test files for AutoGrid www
  • autogrid

    4.2.6-2 pre-calculate binding of ligands to their receptor www
  • avce00

    2.0.0-3 Conversion of ESRI Arcinfo Vector Coverage in E00 format www
  • avogadro-data

    1.0.3-10.1 Molecular Graphics and Modelling System (Data Files) www
  • avogadro

    1.0.3-10.1+b1 Molecular Graphics and Modelling System www
  • aweather

    0.8.1-1+b1 Advanced Weather Monitoring Program www
  • Back to top
  • B

  • Rate It
  • ballview

    1.4.2+20140406-1+b1 free molecular modeling and molecular graphics tool www
  • bamtools

    2.3.0+dfsg-2 toolkit for manipulating BAM (genome alignment) files www
  • bauble

    0.9.7-2 biodiversity collection manager software application www
  • bedtools-test

    2.21.0-1 test data for the bedtools package www
  • bedtools

    2.21.0-1 suite of utilities for comparing genomic features www
  • bibus

    1.5.2-4 bibliographic database www
  • biogenesis

    0.8-2 artificial life program that simulates evolution of organisms www
  • biomaj-properties

    1.2.3-4 biological data-bank updater - example properties files www
  • biomaj

    1.2.3-4 biological data-bank updater www
  • bioperl-run

    1.6.9-2 BioPerl wrappers: scripts www
  • bioperl

    1.6.924-1 Perl tools for computational molecular biology www
  • biosig-tools

    1.3.0-2+b2 format conversion tools for biomedical data formats www
  • biosquid

    1.9g+cvs20050121-4 utilities for biological sequence analysis
  • bist

    0.5.2-1 chemical drawing tool www
  • bkchem

    0.13.0-4 Chemical structures editor www
  • blast2

    1:2.2.26.20120620-8 Basic Local Alignment Search Tool www
  • bodr

    10-1 Blue Obelisk Data Repository www
  • boinc-app-milkyway

    0.18d-4+b1 Milkyway@home application for the BOINC client www
  • boinc-app-seti-graphics

    7.28~svn2633-3+rpi1 SETI@home application for the BOINC client (with graphics) www
  • boinc-app-seti

    7.28~svn2633-3+rpi1 SETI@home application for the BOINC client www
  • boolector

    1.5.118.6b56be4.121013-1 SMT solver for bit-vectors and arrays www
  • bowtie-examples

    1.1.1-2 Examples for bowtie, the ultrafast memory-efficient short read aligner www
  • bowtie2-examples

    2.2.4-1 Examples for bowtie2 www
  • bowtie

    1.0.0-5 Ultrafast memory-efficient short read aligner www
  • boxshade

    3.3.1-8 Pretty-printing of multiple sequence alignments www
  • bppphyview

    0.3.0-1 Bio++ Phylogenetic Viewer
  • bppsuite

    0.7.0-1 Bio++ program suite
  • bwa

    0.6.2-1 Burrows-Wheeler Aligner www
  • Back to top
  • C

  • Rate It
  • cafeobj

    1.5.2-2 new generation algebraic specification and programming language www
  • cain-examples

    1.9-8 simulations of chemical reactions www
  • cain-solvers

    1.9-8 simulations of chemical reactions www
  • cain

    1.9-8 simulations of chemical reactions www
  • camitk-actionstatemachine

    3.3.2-2 pipeline replay application for the CamiTK library www
  • camitk-imp

    3.3.2-2 workbench application for the CamiTK library www
  • caret

    5.6.4~dfsg.1-3+b1 Computerized Anatomical Reconstruction and Editing Toolkit www
  • cassiopee

    1.0.1+dfsg-3 index and search tool in genomic sequences www
  • cba

    0.3.6-4.1 Continuous Beam Analysis www
  • cbflib-bin

    0.9.2.2-1 utilities to manipulate CBF files www
  • cbmc

    4.9-4 bounded model checker for C and C++ programs www
  • cclib

    1.1-1 Parsers and algorithms for computational chemistry www
  • cd-hit

    4.6.1-2012-08-27-2 suite of programs designed to quickly group sequences www
  • cdbfasta

    0.99-20100722-1 Constant DataBase indexing and retrieval tools for multi-FASTA files www
  • celestia-common

    1.6.1+dfsg-3.1 datafiles for Celestia, a real-time visual space simulation www
  • celestia-glut

    1.6.1+dfsg-3.1 real-time visual space simulation (GLUT frontend) www
  • celestia

    1.6.1+dfsg-3.1 real-time visual space simulation www
  • cernlib-core

    20061220+dfsg3-4.1 CERNLIB data analysis suite - main libraries and programs www
  • cernlib-extras

    20061220+dfsg3-4.1 CERNLIB data analysis suite - extra programs www
  • cernlib-montecarlo

    20061220+dfsg3-3 CERNLIB Monte Carlo libraries www
  • cernlib

    20061220+dfsg3-4.1 CERNLIB data analysis suite - general use metapackage www
  • cgns-convert

    3.1.4.2-2+b1 CFD General Notation System - Conversion tools www
  • ch5m3d

    1.2.5+dfsg-1 create and visualize 3-dimensional drawings of simple molecules www
  • chemical-structures

    2.2.dfsg.0-12 set of molecular structures in open formats
  • chemtool

    1.6.14-1 chemical structures drawing program www
  • chimeraslayer

    20101212+dfsg-1 detects likely chimeras in PCR amplified DNA www
  • choreonoid-data

    1.1.0+dfsg-6.1 Integrated robotics GUI environment - shared data www
  • choreonoid-plugins-base

    1.1.0+dfsg-6.1+b2 Integrated robotics GUI environment - core plug-ins www
  • choreonoid

    1.1.0+dfsg-6.1+b2 Integrated robotics GUI environment www
  • circos-tools

    0.18-1 plotter for visualizing data - helper utilities www
  • circos

    0.66-1 plotter for visualizing data www
  • clearcut

    1.0.9-1 extremely efficient phylogenetic tree reconstruction www
  • clinica-common

    0.3.0-1 Simple medical records manager (architecture independent files) www
  • clinica-dev

    0.3.0-1 Simple medical records manager (development files) www
  • clinica-plugins

    0.3.0-1 Simple medical records manager (plugins) www
  • clinica

    0.3.0-1 Simple medical records manager www
  • clonalframe

    1.2-3 inference of bacterial microevolution using multilocus sequence data www
  • clustalo

    1.2.1-1 General purpose multiple sequence alignment program for proteins www
  • clustalw

    2.1+lgpl-4 global multiple nucleotide or peptide sequence alignment www
  • clustalx

    2.1+lgpl-3 Multiple alignment of nucleic acid and protein sequences (graphical interface) www
  • cmtk

    3.2.2-1.3 Computational Morphometry Toolkit www
  • cnrun

    1.1.14-1 NeuroML-capable neuronal network simulator www
  • code-aster-gui

    1.13.1-2 Graphical user interface for Code_Aster - client www
  • code-aster-mpi-engine

    11.5.0+dfsg2-3+b1 Code_Aster finite element program - parallel binary www
  • code-aster-run

    1.13.1-2 Graphical user interface for Code_Aster - server www
  • code-aster-test

    11.5.0+dfsg2-3 Code_Aster finite element program - test files and examples www
  • code-aster

    11.5.0+dfsg2-3+b1 Code_Aster finite element program - metapackage www
  • code-saturne-bin

    3.3.2-4 General purpose Computational Fluid Dynamics (CFD) software - binaries www
  • code-saturne-data

    3.3.2-4 General purpose Computational Fluid Dynamics (CFD) software - data www
  • code-saturne-doc

    3.3.2-4 General purpose Computational Fluid Dynamics (CFD) software - Documentation www
  • code-saturne-include

    3.3.2-4 General purpose Computational Fluid Dynamics (CFD) software - includes www
  • code-saturne

    3.3.2-4 General purpose Computational Fluid Dynamics (CFD) software www
  • coinor-cbc

    2.8.12-1 Coin-or branch-and-cut mixed integer programming solver www
  • coinor-clp

    1.15.10-1 Coin-or linear programming solver www
  • coinor-csdp

    6.1.1-1 A software package for semidefinite programming www
  • coinor-libcbc3

    2.8.12-1 Coin-or branch-and-cut mixed integer programming solver (shared libraries) www
  • coinor-libcgl1

    0.58.9-1 COIN-OR Cut Generation Library www
  • coinor-libclp1

    1.15.10-1 Coin-or linear programming solver (shared libraries) www
  • coinor-libcoinutils3

    2.9.15-3 Coin-or collection of utility classes (binaries and libraries) www
  • coinor-libdylp0

    1.6.0-1.1 Linear programming solver using the dynamic simplex algorithm www
  • coinor-libflopc++0

    1.0.6-3.1+b1 Formulation of Linear Optimization Problems in C++ www
  • coinor-libosi1

    0.106.9-1 COIN-OR Open Solver Interface www
  • coinor-libsymphony3

    5.6.1-1 COIN-OR solver for mixed-integer linear programs (shared libraries) www
  • coinor-libvol0

    1.1.7-1 Coin-or linear programming solver www
  • coinor-symphony

    5.6.1-1 COIN-OR solver for mixed-integer linear programs www
  • complearn-tools

    1.1.7-2 complearn machine-learning command-line utilities www
  • concavity

    0.1-2 predictor of protein ligand binding sites from structure and conservation www
  • connectome-workbench

    1.0-2 brain visualization, analysis and discovery tool www
  • conquest-common

    1.4.17d-1 ConQuest DICOM Server - common files www
  • conquest-dbase

    1.4.17d-1 ConQuest DICOM Server - DBaseIII backend www
  • conquest-mysql

    1.4.17d-1 ConQuest DICOM Server - MySQL backend www
  • conquest-postgres

    1.4.17d-1 ConQuest DICOM Server - PostgreSQL backend www
  • conquest-sqlite

    1.4.17d-1 ConQuest DICOM Server - SQLite backend www
  • conservation-code

    20110309.0-3 protein sequence conservation scoring tool www
  • cp2k-data

    2.5.1-3 Ab Initio Molecular Dynamics (data files) www
  • cp2k

    2.5.1-3 Ab Initio Molecular Dynamics www
  • cpl-plugin-amber

    4.3.1+dfsg-1 ESO data reduction pipeline for AMBER www
  • cpl-plugin-fors

    5.0.0+dfsg-2 ESO data reduction pipeline for FORS www
  • cpl-plugin-giraf

    2.12.1+dfsg-1 ESO data reduction pipeline for GIRAFFE www
  • cpl-plugin-hawki-calib

    1.8.14+dfsg-2 ESO data reduction pipeline calibration data downloader for HAWK-I www
  • cpl-plugin-hawki

    1.8.14+dfsg-2 ESO data reduction pipeline for HAWK-I www
  • cpl-plugin-kmos

    1.3.5+dfsg-1 ESO data reduction pipeline for KMOS www
  • cpl-plugin-sinfo

    2.5.2+dfsg-2 ESO data reduction pipeline SINFONI www
  • cpl-plugin-uves

    5.4.3+dfsg-1 ESO data reduction pipeline for UVES www
  • cpl-plugin-vimos

    2.9.15+dfsg-1 ESO data reduction pipeline for VIMOS www
  • cpl-plugin-xshoo

    2.5.2+dfsg-1 ESO data reduction pipeline for XSHOOTER www
  • critterding

    1.0-beta12.1-1.2 Evolving Artificial Life www
  • ctsim-help

    5.2.0-2 Online help file for CTSim www
  • ctsim

    5.2.0-2 Computed tomography simulator www
  • Back to top
  • D

  • Rate It
  • dans-gdal-scripts

    0.23-2+b1 GDAL contributed tools by Geographic Information Network of Alaska www
  • dcmtk

    3.6.0-15 OFFIS DICOM toolkit command line utilities www
  • dialign-tx-data

    1.0.2-7 Segment-based multiple sequence alignment (data files) www
  • dialign-tx

    1.0.2-7 Segment-based multiple sequence alignment www
  • dialign

    2.2.1-7 Segment-based multiple sequence alignment www
  • dicomnifti

    2.32.1-1 converts DICOM files into the NIfTI format www
  • dicompyler

    0.4.2-2 radiation therapy research platform www
  • diet-agent

    2.8.0-1 DIET grid middleware - agent www
  • dimbl

    0.12-2 Distributed Memory Based Learner www
  • discosnp

    1.2.5-1 discovering Single Nucleotide Polymorphism from raw set(s) of reads www
  • disulfinder-data

    1.2.11-4 data files for predictor of disulfide bonds in proteins www
  • disulfinder

    1.2.11-4 cysteines disulfide bonding state and connectivity predictor www
  • dnaclust

    3-2 tool for clustering millions of short DNA sequences www
  • dotur

    1.53-2 distance based OTU and richness estimation www
  • dozzaqueux-data

    3.35-2 databases for chemical mixtures www
  • dozzaqueux

    3.35-2 simulator for chemical mixtures www
  • drawxtl

    5.5-3 crystal structure viewer www
  • drslib

    0.3.0a3-5 Command-line tools for the Data Reference Syntax library www
  • dsdp

    5.8-9.1 Software for Semidefinite Programming www
  • dssp

    2.2.1-2 protein secondary structure assignment based on 3D structure www
  • dx

    1:4.4.4-7+b1 OpenDX (IBM Visualization Data Explorer) - main package www
  • dxsamples

    4.4.0-1 Sample programs for the OpenDX Data Explorer www
  • Back to top
  • E

  • Rate It
  • e00compr

    1.0.1-2 A program to read/write Arcinfo compressed E00 files www
  • easychem

    0.6-8 Draw high-quality molecules and 2D chemical formulas www
  • ecaccess

    4.0.1-1 clients to access ECMWF facilities www
  • edfbrowser

    1.54-2 viewer for biosignal storage files such as bdf and edf www
  • edtsurf

    0.2009-3 triangulated mesh surfaces for protein structures www
  • eficas

    6.4.0-1-1.1 Graphical editor for Code Aster command files www
  • elk-lapw

    2.3.22-1 All-Electron Density-Functional Electronic Structure Code www
  • elki

    0.6.0-2 Data mining algorithm development framework www
  • elmer-common

    6.1.0.svn.5396.dfsg2-3+rpi2 finite element multiphysics suite - architecture-independent files www
  • elmer

    6.1.0.svn.5396.dfsg2-3+rpi2 finite element multiphysics suite - binaries www
  • embassy-domainatrix

    0.1.650-1 Extra EMBOSS commands to handle domain classification file www
  • embassy-domalign

    0.1.650-1 Extra EMBOSS commands for protein domain alignment www
  • embassy-domsearch

    1:0.1.650-1 Extra EMBOSS commands to search for protein domains www
  • emboss-data

    6.6.0+dfsg-1 data files for the EMBOSS package www
  • emboss-explorer

    2.2.0-8 web-based GUI to EMBOSS www
  • emboss-lib

    6.6.0+dfsg-1 EMBOSS Libraries www
  • emboss

    6.6.0+dfsg-1 european molecular biology open software suite www
  • engauge-digitizer

    5.2-1 interactively extracts numbers from bitmap graphs or maps www
  • ent

    1.1debian-4 pseudorandom number sequence test program www
  • epigrass

    2.4.0-2 scientific tool for simulations and scenario analysis in network epidemiology www
  • epsilon-bin

    0.9.2-2 Library for wavelet image compression - tools www
  • ergo

    3.4.0-1 Quantum chemistry program for large-scale calculations www
  • eso-midas

    13.09pl1.4-1 European Southern Observatory Munich Image Data Analysis System www
  • esorex

    3.11-1 Execution Tool for European Southern Observatory pipelines www
  • esys-particle

    2.3-2 Software for particle-based numerical modelling. MPI version. www
  • etsf-io

    1.0.3-4 Binary tools to check, merge and read ETSF files www
  • exonerate

    2.2.0-6 generic tool for pairwise sequence comparison www
  • expeyes-clib

    3.2.0-1 hardware & software framework for developing science experiments www
  • expeyes

    3.2.0-1 hardware & software framework for developing science experiments www
  • extrema

    4.4.5.dfsg-3 powerful visualization and data analysis tool www
  • Back to top
  • F

  • Rate It
  • fastaq

    1.5.0-1 FASTA and FASTQ file manipulation tools www
  • fastdnaml

    1.2.2-10 Tool for construction of phylogenetic trees of DNA sequences www
  • fastlink

    4.1P-fix95-3 faster version of pedigree programs of Linkage www
  • fastqc

    0.11.2+dfsg-3 quality control for high throughput sequence data www
  • fasttree

    2.1.7-2 phylogenetic trees from alignments of nucleotide or protein sequences www
  • fastx-toolkit

    0.0.14-1 FASTQ/A short nucleotide reads pre-processing tools www
  • fcc

    2.8-1 Script to compile C/C++ programs and link to Fortran libraries www
  • feedgnuplot

    1.34-2 Pipe-oriented frontend to Gnuplot www
  • ffindex

    0.9.9.3-2 simple index/database for huge amounts of small files www
  • figtree

    1.4-2 graphical phylogenetic tree viewer www
  • filo

    1.1+2011123001.1 FILe and stream Operations www
  • fitsverify

    4.17-1 FITS File Format-Verification Tool www
  • fityk

    1.2.1-0.1 general-purpose nonlinear curve fitting and data analysis www
  • flexpart

    9.02-9 Particle Dispersion model for tracing air transport phenomena www
  • flextra

    5.0-2.1 Trajectory model for tracing air transport phenomena www
  • fractalnow

    0.8.1-1 Fast, advanced fractal generator www
  • free42-nologo

    1.4.77-1.1 Free42 is a re-implementation of the HP-42S calculator www
  • freecad

    0.14.3702+dfsg-3 Extensible Open Source CAx program (alpha) www
  • freecontact

    1.0.21-3 fast protein contact predictor www
  • freediams

    0.9.4-1 pharmaceutical drug prescription and interaction manager www
  • freemedforms-common-resources

    0.9.4-1 common data for the FreeMedForms project applications www
  • freemedforms-emr-resources

    0.9.4-1 data for the FreeMedForms EMR www
  • freemedforms-emr

    0.9.4-1 electronic medical record manager www
  • freemedforms-freedata

    0.9.4-1 free extra-data for the FreeMedForms project www
  • freemedforms-libs

    0.9.4-1 common libs for the FreeMedForms project www
  • freemedforms-project

    0.9.4-1 FreeMedForms project www
  • freemedforms-theme

    0.9.4-1 theme for the FreeMedForms project www
  • frog

    0.12.17-7.1+b1 tagger and parser for Dutch language (runtime) www
  • frogdata

    0.4-1 Data files for Frog www
  • fslview

    4.0.1-4 viewer for (f)MRI and DTI data www
  • ftools-fv

    5.3+dfsg-5 Tool for viewing and editing FITS format files www
  • ftools-pow

    5.3+dfsg-5 Curve plotting and image display interface tool www
  • funtools

    1.4.4+dfsg2-1 Minimal buy-in FITS utility package www
  • fxt-tools

    0.3.0-1 Multithreaded tracing library www
  • Back to top
  • G

  • Rate It
  • g3data

    1:1.5.3-2.1 extract data from scanned graphs www
  • gabedit

    2.4.8-1 graphical user interface to Ab Initio packages www
  • gamgi-data

    0.17.1-1 General Atomistic Modelling Graphic Interface (data) www
  • gamgi

    0.17.1-1 General Atomistic Modelling Graphic Interface (GAMGI) www
  • garlic

    1.6-1.1 A visualization program for biomolecules www
  • gausssum

    2.2.6.1-1 parse and display Gaussian, GAMESS, and etc's output www
  • gbrowse-calign

    2.54+dfsg-3+b1 CAlign helper www
  • gbrowse-data

    2.54+dfsg-3 Sample data to use GBrowse www
  • gbrowse

    2.54+dfsg-3 GMOD Generic Genome Browser www
  • gchempaint

    0.14.9-1 2D chemical structures editor for the GNOME2 desktop www
  • gcrystal

    0.14.9-1 lightweight crystal structures visualizer www
  • gcu-bin

    0.14.9-1 GNOME chemistry utils (helper applications) www
  • gcu-plugin

    0.14.9-1 GNOME chemistry utils (browser plugin) www
  • gcx

    1.3-1.1 astronomical image processing and photometry gtk+ application www
  • gdal-bin

    1.10.1+dfsg-8+b2 Geospatial Data Abstraction Library - Utility programs www
  • gdis-data

    0.90-5 molecular and crystal model viewer (data files) www
  • gdis

    0.90-5 molecular and crystal model viewer www
  • gdpc-examples

    2.2.5-3 example files for the gdpc program www
  • gdpc

    2.2.5-3 visualiser of molecular dynamic simulations www
  • geant321-data

    1:3.21.14.dfsg-11 [Physics] Data for GEANT 3.21 detector simulator www
  • geant321

    1:3.21.14.dfsg-11 [Physics] Particle detector description and simulation tool www
  • gelemental

    1.2.0-9 Periodic Table viewer www
  • genometools-common

    1.5.3-2 shared data files for GenomeTools www
  • genometools

    1.5.3-2 versatile genome analysis toolkit www
  • gentle

    1.9+cvs20100605+dfsg1-3 suite to plan genetic cloning www
  • geographiclib-tools

    1.37-3 C++ library to solve some geodesic problems -- tools www
  • geotiff-bin

    1.4.0-5 GeoTIFF (geografic enabled TIFF) library -- tools www
  • gerris-mpi

    20131206+dfsg-5 Fluid Flow Solver www
  • gerris

    20131206+dfsg-5 Fluid Flow Solver www
  • getdata

    0.2-1 management of external databases www
  • gff2aplot

    2.0-7 pair-wise alignment-plots for genomic sequences in PostScript www
  • gff2ps

    0.98d-4 produces PostScript graphical output from GFF-files www
  • gfsview

    20121130+dfsg-1+b1 graphical viewer for Gerris simulation files www
  • ghkl

    4.0.3-4 diffractometer computation control application www
  • ginkgocadx

    3.7.0.1465.37+dfsg-1 Medical Imaging Software and complete DICOM Viewer www
  • glam2

    1064-3 gapped protein motifs from unaligned sequences www
  • gmt

    4.5.12-1 Generic Mapping Tools www
  • gnuhealth-client

    2.4.1-2 Electronic Medical Record and Hospital Information System - Client www
  • gnuhealth-server

    2.4.1-2 Electronic Medical Record and Hospital Information System - Server www
  • gnuhealth

    2.4.1-2 Electronic Medical Record and Hospital Information System www
  • gofigure2

    0.9.0-3 Tool for visualizing, processing and analysing of bioimages www
  • gperiodic

    2.0.10-7 periodic table application www
  • gpiv-mpi

    0.6.1-2.3 GUI program for Particle Image Velocimetry - MPI version www
  • gpiv

    0.6.1-2.3 GUI program for Particle Image Velocimetry www
  • gpivtools-mpi

    0.6.0-3.1 command line programs for Particle Image Velocimetry - MPI version www
  • gpivtools

    0.6.0-3.1 command line programs for Particle Image Velocimetry www
  • gpx2shp

    0.71.0-1 convert GPS or GPX file to ESRI Shape file www
  • gpx

    0~20140109+git3570fc9-2 Gcode to x3g conversion post processor www
  • gr-fcdproplus

    3.7.11-3 Funcube Dongle Pro Plus controller for GNU Radio www
  • grads

    2:2.0.2-3+b1 Grid Analysis and Display System for earth science data www
  • grass-core

    6.4.4-1 GRASS GIS core components www
  • grass-gui

    6.4.4-1 GRASS GIS graphical user interfaces www
  • grass

    6.4.4-1 Geographic Resources Analysis Support System (GRASS GIS) www
  • gravit-data

    0.5.1+dfsg-1 data files for Gravit www
  • gri

    2.12.23-8 a language for scientific illustration www
  • grinder

    0.5.3-3 Versatile omics shotgun and amplicon sequencing read simulator www
  • gromacs-data

    5.0.2-1 GROMACS molecular dynamics sim, data and documentation www
  • gromacs-mpich

    5.0.2-1 Molecular dynamics sim, binaries for MPICH parallelization www
  • gromacs-openmpi

    5.0.2-1 Molecular dynamics sim, binaries for OpenMPI parallelization www
  • gromacs

    5.0.2-1 Molecular dynamics simulator, with building and analysis tools www
  • gvb

    1.4-1 visual simulator of 1 and 2-dimensional vibrations www
  • gwyddion-common

    2.38-2 architecture-independent files for Gwyddion SPM analysis tool www
  • gwyddion-plugins

    2.38-2 plugins for Gwyddion SPM analysis tool www
  • gwyddion

    2.38-2 Scanning Probe Microscopy visualization and analysis tool www
  • gyoto

    0.2.3-1 General relativistic ray-tracing www
  • Back to top
  • H

  • Rate It
  • h5utils

    1.12.1-2.1+b1 HDF5 files visualization tools www
  • harminv

    1.3.1-10 extraction of complex frequencies and amplitudes from time series www
  • hdf5-helpers

    1.8.13+docs-15 Hierarchical Data Format 5 (HDF5) - Helper tools www
  • hdf5-tools

    1.8.13+docs-15 Hierarchical Data Format 5 (HDF5) - Runtime tools www
  • hdfview

    2.9-3+b1 Java HDF Object viewer www
  • herwig++-data

    2.6.0-1 Herwig++ Data www
  • herwig++-dev

    2.6.0-1 Herwig++ development files www
  • herwig++

    2.6.0-1 Multi-purpose event generator for high energy physics www
  • hhsuite-data

    2.0.16-5 sensitive protein sequence searching based on HMM-HMM alignment (data) www
  • hidrd

    0.2.0-11 tools for parsing and generating HID report descriptors www
  • hmmer2-pvm

    2.3.2-8 HMMER programs with PVM (Parallel Virtual Machine) support www
  • hmmer2

    2.3.2-8 profile hidden Markov models for protein sequence analysis www
  • hmmer

    3.1b1-3 profile hidden Markov models for protein sequence analysis www
  • hodie

    1.5-2 prints the date in latin
  • hpcc

    1.4.1-3 HPC Challenge benchmark www
  • htcondor

    8.2.3~dfsg.1-6+rpi1 distributed workload management system www
  • hyantesite

    1.3.0-1 geomatic tool to compute neighbourhood population potential www
  • Back to top
  • I

  • Rate It
  • idba

    1.1.2-1 iterative De Bruijn Graph De Novo short read assembler for transcriptome www
  • ifrit

    3.4.2-1 powerful tool for visualizing 3-dimensional data sets www
  • imagej

    1.49i+dfsg-1 Image processing program inspired by NIH Image www
  • imagevis3d

    3.1.0-4 desktop volume rendering application for large data www
  • imview

    1.1.9c-12+b1 Image viewing and analysis application www
  • indigo-utils

    1.1.12-1 Organic Chemistry Toolkit Utilities www
  • infernal

    1.0.2-2 inference of RNA secondary structural alignments www
  • ipig

    0.0.r5-1 integrating PSMs into genome browser visualisations www
  • itksnap

    2.2.0-1.1 semi-automatic segmentation of structures in 3D images www
  • Back to top
  • J

  • Rate It
  • jalview

    2.7.dfsg-4 multiple alignment editor www
  • jblas

    1.2.3-5 fast linear algebra library for Java www
  • jemboss

    6.6.0+dfsg-1 graphical user interface to EMBOSS www
  • jmol

    12.2.32+dfsg2-1 Molecular Viewer www
  • julia-factcheck

    0.1.2-2 Midje-like testing for Julia www
  • Back to top
  • K

  • Rate It
  • kalign

    1:2.03+20110620-2 Global and progressive multiple sequence alignment www
  • kalzium-data

    4:4.14.2-1 data files for Kalzium www
  • kalzium

    4:4.14.2-1 periodic table and chemistry tools www
  • kissplice

    2.1.0-1 Detection of various kinds of polymorphisms in RNA-seq data www
  • klustakwik

    2.0.1-1 automatic sorting of the samples (spikes) into clusters www
  • kst-data

    2.0.3-3 set of data files for kst www
  • kst

    2.0.3-3 scientific data plotting tool www
  • kstars-data

    4:4.14.2-1 data files for KStars desktop planetarium www
  • kstars

    4:4.14.2-1 desktop planetarium for KDE www
  • kxterm

    20061220+dfsg3-4.1 CERNLIB data analysis suite - KUIP terminal emulator www
  • Back to top
  • L

  • Rate It
  • lammps

    0~20140523.gite5e877d-1 Molecular Dynamics Simulator www
  • last-align

    490-1 genome-scale comparison of biological sequences www
  • lbt

    1.2.2-5 converts from LTL formulas to Büchi automata www
  • lhapdf-pdfsets-minimal

    5.9.1-3 Minimal PDF Sets of LHAPDF www
  • libadios-bin

    1.7.0-4 ADIOS Adaptable IO system for simulations - binaries www
  • libadios-examples

    1.7.0-4 ADIOS Adaptable IO system for simulations - exampes www
  • libball1.4-data

    1.4.2+20140406-1 Biochemical Algorithms Library www
  • libball1.4

    1.4.2+20140406-1+b1 Biochemical Algorithms Library www
  • libballview1.4

    1.4.2+20140406-1+b1 Biochemical Algorithms Library, VIEW framework www
  • libcamitk3-data

    3.3.2-2 Computer Assisted Medical Intervention Tool Kit - data www
  • libcamitk3

    3.3.2-2 Computer Assisted Medical Intervention Tool Kit - runtime www
  • libcassie1

    1.0.1+dfsg-3 library implementating search algorithms www
  • libclhep2.1

    2.1.4.1-1.1 CLHEP: A Class Library for High Energy Physics www
  • libclinica0

    0.3.0-1 Simple medical records manager (shared library) www
  • libdynamicedt3d1.6

    1.6.8+dfsg-1 Incrementally updatable Euclidean distance transform library www
  • libej0

    3.2.0-1 hardware & software framework for developing science experiments www
  • libgfsgl0

    20121130+dfsg-1+b1 graphical viewer for Gerris simulation files. Shared library www
  • libghemical-data

    3.0.0-2 Molecular Modelling Library (data files) www
  • libgnuradio-fcdproplus0

    3.7.11-3 Funcube Dongle Pro Plus controller for GNU Radio www
  • libgrib-api-data

    1.8.0.1-1 grib_api definition files www
  • libgrits5

    0.8.1-1 Grits is a Virtual Globe library www
  • libgyoto2

    0.2.3-1 General relativistic geodesic integration and ray-tracing www
  • libkst2core2

    2.0.3-3 kst core library www
  • libkst2math2

    2.0.3-3 kst math library www
  • libkst2widgets2

    2.0.3-3 kst widgets library www
  • liblas-bin

    1.8.0-1 ASPRS LiDAR data translation toolset www
  • libliggghts3

    3.0.3+repack-2 Open Source DEM Particle Simulation Software. Shared library www
  • liblinear-tools

    1.8+dfsg-4 Standalone applications for LIBLINEAR www
  • libmed-tools

    3.0.6-7 Runtime tools to handle MED files www
  • libncarg-bin

    6.2.0-3+b1 NCAR command-language library - development tools www
  • libncarg-data

    6.2.0-3 NCAR command-language library - Data www
  • libocas-tools

    0.97-1 Standalone applications implementing the OCAS solver www
  • liboctomap1.6

    1.6.8+dfsg-1 3D occupancy grid mapping approach library for mapping www
  • liboctovis1.6

    1.6.8+dfsg-1 Visualization library for OctoMap www
  • libopenmeeg1

    2.0.0.dfsg-5.1 library for solving EEG and MEG forward and inverse problems www
  • libpwiz-tools

    3.0.6585-2 ProteoWizard command line tools www
  • libqgis-customwidgets2.4.0

    2.4.0-1 QGIS custom widgets for Qt Designer www
  • libqtpropertybrowser3

    3.3.2-2 Qt Property Browser Library - runtime www
  • libroot-graf2d-postscript5.34

    5.34.19+dfsg-1.2+rpi1 Postscript/PDF renderer library for ROOT www
  • libroot-proof-proofplayer5.34

    5.34.19+dfsg-1.2+rpi1 PROOF plugin for ROOT www
  • libroot-proof5.34

    5.34.19+dfsg-1.2+rpi1 PROOF library for ROOT www
  • librsl1

    1.43-1 TRMM Radar Software Library www
  • libsilo-bin

    4.9.1-3+b1 Utilities to manipulate libsilo files www
  • libsimgrid3.11

    3.11.1-9 Toolkit for scalable simulation of distributed applications www
  • libstxxl1

    1.4.0-3 C++ Standard Template Library for extra large datasets www
  • libxy-bin

    1.3-1 xylib - utilities www
  • libyade

    1.12.0-2 Platform for discrete element modeling. Libraries www
  • liggghts

    3.0.3+repack-2 Open Source DEM Particle Simulation Software. www
  • litl-tools

    0.1.5+dfsg-2 Lightweight Trace Library - tools www
  • logcentral-tools

    2.7-1 Logging service for distributed applications www
  • logcentral

    2.7-1 Logging service for distributed applications www
  • logol-bin

    1.7.0-2 Pattern matching tool using Logol language www
  • logol

    1.7.0-2 Pattern matching tool using Logol language www
  • loki

    2.4.7.4-5 MCMC linkage analysis on general pedigrees
  • looptools

    2.8-1 Integral Evaluator of One-loop Feynman Diagram www
  • ltrsift-examples

    1.0.2-1 example data for LTRsift www
  • ltrsift

    1.0.2-1 postprocessing and classification of LTR retrotransposons www
  • lutefisk

    1.0.7+dfsg-4 de novo interpretation of peptide CID spectra www
  • Back to top
  • M

  • Rate It
  • macs

    2.0.9.1-1 Model-based Analysis of ChIP-Seq on short reads sequencers www
  • mafft

    7.205-1 Multiple alignment program for amino acid or nucleotide sequences www
  • magics++

    2.22.7.dfsg.1-4 Executables for the magics++ library www
  • mapsembler2

    2.1.6+dfsg-1 bioinformatics targeted assembly software www
  • maq

    0.7.1-5 maps short fixed-length polymorphic DNA sequence reads to reference sequences www
  • maqview

    0.2.5-6 graphical read alignment viewer for short gene sequences www
  • massxpert-data

    3.4.1-1 linear polymer mass spectrometry software - arch-indep data www
  • massxpert

    3.4.1-1 linear polymer mass spectrometry software www
  • maude

    2.6-6 high-performance logical framework www
  • mayavi2

    4.3.1-3.1 scientific visualization package for 2-D and 3-D data www
  • mbt

    3.2.10-4 memory-based tagger-generator and tagger www
  • mbtserver

    0.7-3 Server extensions for the MBT tagger www
  • meep-lam4

    1.2.1-3+b1 software package for FDTD simulation, parallel (OpenMPI) version www
  • meep-mpi-default

    1.2.1-2+b1 software package for FDTD simulation, parallel (OpenMPI) version www
  • meep-mpich2

    1.2.1-3+b1 software package for FDTD simulation, parallel (OpenMPI) version www
  • meep-openmpi

    1.2.1-2+b1 software package for FDTD simulation, parallel (OpenMPI) version www
  • meep

    1.2.1-2+b1 software package for FDTD simulation www
  • melting-gui

    4.3.1+dfsg-1 graphical interface to compute the melting temperature of nucleic acid duplex www
  • melting

    4.3.1+dfsg-1 compute the melting temperature of nucleic acid duplex www
  • merkaartor

    0.18.1-3+b5 map editor for OpenStreetMap.org www
  • metastudent-data-2

    1.0.0-1 predictor of Gene Ontology terms from protein sequence - data #2 www
  • metastudent-data

    1.0.1-2 predictor of Gene Ontology terms from protein sequence - data files www
  • metastudent

    1.0.11-2 predictor of Gene Ontology terms from protein sequence www
  • metview-data

    4.4.8+dfsg.1-8 Data needed for the Metview data analysis environment www
  • metview

    4.4.8+dfsg.1-8 Interactive data visualization and analysis environment, www
  • mialmpick

    0.2.10-2 Tools for landmark picking in 3D volume data sets www
  • microbiomeutil-data

    20101212+dfsg-1 Reference 16S sequences and NAST-alignments used by microbiomeutil tools www
  • microbiomeutil

    20101212+dfsg-1 Microbiome Analysis Utilities www
  • microhope

    3.2.0-1 hardware & software framework to learn microcontrollers www
  • minc-tools

    2.2.00-6 MNI medical image format tools www
  • minia

    1.6088-1 short-read biological sequence assembler www
  • minisat+

    1.0-2 solver for pseudo-Boolean constraints www
  • minisat

    1:2.2.1-5 Fast and lightweight SAT solver www
  • mipe

    1.1-4 Tools to store PCR-derived data www
  • mira-assembler

    4.0.2-1 Whole Genome Shotgun and EST Sequence Assembler www
  • mira-examples

    4.0.2-1 files to experiment with the mira assembler www
  • mitools

    1.8.8-1 view, convert and perform basic maths with medical image datasets www
  • mldemos

    0.5.1-3 Machine Learning Demos (MLDemos) with Visualization www
  • mlpack-bin

    1.0.10-1 intuitive, fast, scalable C++ machine learning library (binaries) www
  • mlv-smile

    1.47-3 Find statistically significant patterns in sequences www
  • mmass-modules

    5.5.0-4 Mass spectrometry tool for proteomics - extension modules www
  • mmass

    5.5.0-4 Mass spectrometry tool for proteomics www
  • mobyle-programs

    5.1.2-1 Program descriptions for the mobyle portal www
  • mobyle-tutorials

    1.5.0-1 program tutorials for the mobyle portal www
  • mobyle-utils

    1.5.3+dfsg-1 binary tools used by Mobyle www
  • mobyle

    1.5.3+dfsg-1 Web portal that provides web forms for command-line software www
  • molds

    0.3.1-1 Semi-empirical electronic structure and molecular dynamics www
  • mona

    1.4-15-1 theorem prover based on automata www
  • montecarlo-base

    20061220+dfsg3-3 [Physics] Common files for CERNLIB Monte Carlo libraries www
  • montecarlo-data

    20061220+dfsg3-3 [Physics] data for CERNLIB Monte Carlo libraries www
  • mopac7-bin

    1.15-6 Semi-empirical Quantum Chemistry Library (binaries) www
  • morse-simulator-data

    1.2.1-2 Multi-OpenRobot Simulation Engine www
  • morse-simulator

    1.2.1-2 Multi-OpenRobot Simulation Engine www
  • mothur-mpi

    1.33.3+dfsg-2 mpi-enabled binary for mothur www
  • mothur

    1.33.3+dfsg-2 sequence analysis suite for research on microbiota www
  • mozilla-biofox

    1.6-1 extension of bioinformatics tools to Iceape and Iceweasel browsers www
  • mpb-mpi

    1.5-2+b1 MIT Photonic-Bands, parallel (mpich) version www
  • mpb-scm

    1.5-2 MIT Photonic-Bands initialisation files www
  • mpb

    1.5-2+b1 MIT Photonic-Bands www
  • mpich2python

    2.9.4-3 MPI-enhanced Python interpreter (MPICH2 based version) www
  • mpqc-openmpi

    2.3.1-16 Massively Parallel Quantum Chemistry Program (OpenMPI transitional package) www
  • mpqc-support

    2.3.1-16 Massively Parallel Quantum Chemistry Program (support tools) www
  • mpqc

    2.3.1-16 Massively Parallel Quantum Chemistry Program www
  • mrbayes-mpi

    3.2.3+dfsg-1 Bayesian Inference of Phylogeny - mpi version www
  • mrbayes

    3.2.3+dfsg-1 Bayesian Inference of Phylogeny www
  • mriconvert

    1:2.0.7-2 medical image file conversion utility www
  • mricron-data

    0.20140804.1~dfsg.1-1 data files for MRIcron www
  • mricron

    0.20140804.1~dfsg.1-1 magnetic resonance image conversion, viewing and analysis www
  • mrpt-apps

    1:1.2.2-1.1 Mobile Robot Programming Toolkit - Console and GUI applications www
  • mrtrix

    0.2.12-1 diffusion-weighted MRI white matter tractography www
  • mummer

    3.23~dfsg-2 Efficient sequence alignment of full genomes www
  • muscle

    1:3.8.31-1 Multiple alignment program of protein sequences www
  • music-bin

    1.0.7-1.2+b1 Multi-Simulation Coordinator for MPI -- Utilities www
  • mustang-testdata

    3.2.2-1 multiple structural alignment of proteins, test data www
  • mustang

    3.2.2-1 multiple structural alignment of proteins www
  • Back to top
  • N

  • Rate It
  • nast-ier

    20101212+dfsg-1 NAST-based DNA alignment tool www
  • nautic

    1.5-1.1 computation of observer position in astro-navigation www
  • ncbi-blast+-legacy

    2.2.29-3 NCBI Blast legacy call script www
  • ncbi-blast+

    2.2.29-3 next generation suite of BLAST sequence search tools www
  • ncbi-epcr

    2.3.12-1-2 Tool to test a DNA sequence for the presence of sequence tagged sites www
  • ncbi-rrna-data

    6.1.20120620-8 large rRNA BLAST databases distributed with the NCBI toolkit www
  • ncbi-seg

    0.0.20000620-2 tool to mask segments of low compositional complexity in amino acid sequences www
  • ncbi-tools-bin

    6.1.20120620-8 NCBI libraries for biology applications (text-based utilities) www
  • ncbi-tools-x11

    6.1.20120620-8 NCBI libraries for biology applications (X-based utilities) www
  • ncl-ncarg

    6.2.0-3+b1 NCAR Command Language and NCAR graphics www
  • nco

    4.4.2-1 Command-line operators to analyze netCDF files www
  • ncoils

    2002-4 coiled coil secondary structure prediction www
  • ncview

    1.93g-1 A X11 visual browser for NetCDF format files www
  • neobio

    0.0.20030929-1.1 computes alignments of amino acid and nucleotide sequences www
  • netcdf-bin

    1:4.1.3-7.2 Programs for reading and writing NetCDF files www
  • nexus-tools

    4.3.2-svn1921-2+b1 NeXus scientific data file format - applications www
  • nifti2dicom-data

    0.4.9-1 data files for nifti2dicom www
  • nifti2dicom

    0.4.9-1 convert 3D medical images to DICOM 2D series www
  • njplot

    2.4-2 phylogenetic tree drawing program www
  • node-sphericalmercator

    1.0.1-2 Spherical Mercator projection support for NodeJS www
  • node-srs

    0.3.2+ds1-1+b1 spatial reference library for Node.js www
  • norsnet

    1.0.17-1 tool to identify unstructured loops in proteins www
  • norsp

    1.0.6-1 predictor of non-regular secondary structure www
  • numdiff

    5.8.1-1 Compare similar files with numeric fields www
  • nwchem-data

    6.5+r26243-4 High-performance computational chemistry software (data files) www
  • nwchem

    6.5+r26243-4 High-performance computational chemistry software www
  • Back to top
  • O

  • Rate It
  • oar-api

    2.5.4-2 transitional dummy package www
  • oar-common

    2.5.4-2 OAR batch scheduler common package www
  • oar-node

    2.5.4-2 OAR batch scheduler node package www
  • oar-restful-api

    2.5.4-2 OAR web services www
  • oar-server-mysql

    2.5.4-2 OAR batch scheduler MySQL server backend package www
  • oar-server-pgsql

    2.5.4-2 OAR batch scheduler PostgreSQL server backend package www
  • oar-server

    2.5.4-2 OAR batch scheduler server package www
  • oar-user-mysql

    2.5.4-2 OAR batch scheduler MySQL user backend package www
  • oar-user-pgsql

    2.5.4-2 OAR batch scheduler PostgreSQL user backend package www
  • oar-user

    2.5.4-2 OAR batch scheduler user package www
  • oar-web-status

    2.5.4-2 OAR batch scheduler visualization tool package www
  • obdgpslogger

    0.16-1.2+b1 suite of tools to log OBDII and GPS data www
  • objcryst-fox

    1.9.6.0-2.1 Free Objects for Xtallography www
  • oce-draw

    0.15-5 OpenCASCADE Community Edition CAE platform shared library www
  • octave-biosig

    1.3.0-2+b2 Octave bindings for BioSig library www
  • octave-gdf

    0.1.2-2+b2 IO library for the GDF -- Octave interface www
  • octave-lhapdf

    5.9.1-3+b1 Octave Bindings for LHAPDF www
  • octave-psychtoolbox-3

    3.0.11.20140816.dfsg1-1 toolbox for vision research -- Octave bindings www
  • octomap-tools

    1.6.8+dfsg-1 Tools for 3D occupancy grid mapping www
  • octovis

    1.6.8+dfsg-1 Visualization tool for OctoMap www
  • odin

    1.8.8-1 develop, simulate and run magnetic resonance sequences www
  • ogdi-bin

    3.2.0~beta2-7.1 Open Geographic Datastore Interface Library -- utilities www
  • openbabel-gui

    2.3.2+dfsg-2 Chemical toolbox utilities (graphical user interface) www
  • openbabel

    2.3.2+dfsg-2 Chemical toolbox utilities (cli) www
  • opencascade-draw

    6.5.0.dfsg-2 OpenCASCADE CAE platform shared library www
  • opencaster

    3.2.2+dfsg-1 MPEG2 transport stream data generator and packet manipulator www
  • openmeeg-tools

    2.0.0.dfsg-5.1 openmeeg library -- command line tools www
  • openmolar

    0.6.0-1 dental practice management software www
  • openmpipython

    2.9.4-3 MPI-enhanced Python interpreter (OpenMPI based version) www
  • openms-common

    1.11.1-5 package for LC/MS data management and analysis - shared data www
  • openms

    1.11.1-5 package for LC/MS data management and analysis www
  • openmx-data

    3.7.6-1 package for nano-scale material simulations (data) www
  • openmx

    3.7.6-1 package for nano-scale material simulations www
  • openrocket

    14.06 Model Rocket Simulator www
  • opensesame

    0.27.4-2 graphical experiment builder for the social sciences www
  • openturns-examples

    1.3-3 examples of OpenTURNS functionalities www
  • openturns-validation

    1.3-3 validation files for OpenTURNS www
  • openuniverse-common

    1.0beta3.1+dfsg-3 3D Universe Simulator data files www
  • openuniverse

    1.0beta3.1+dfsg-3 3D Universe Simulator www
  • openwalnut-modules

    1.4.0~rc1+hg3a3147463ee2-1 Loaders, algorithms and visualization modules for OpenWalnut www
  • openwalnut-qt4

    1.4.0~rc1+hg3a3147463ee2-1 Qt based user interface for OpenWalnut www
  • opj2dat

    20080225-2.1 OriginLab Origin project files to data files converter www
  • optgeo

    2.21-3 simulator for geometrical optics www
  • opticalraytracer

    3.2-1.1 Virtual lens design workshop www
  • origami

    0.7.4-1 command-line management tool for Folding @ Home clients www
  • orthanc

    0.8.4+dfsg-1 RESTful DICOM server for healthcare and medical research www
  • ossim-core

    1.8.16-3 The OSSIM core utilities www
  • otf-trace

    1.12.5+dfsg-1 Open Trace Format support library - development files www
  • ovito

    0.9.5-4 visualization and analysis tool for atomistic simulation data www
  • Back to top
  • P

  • Rate It
  • p4vasp

    0.3.29+dfsg-1 visualization suite for the Vienna Ab-initio Simulation Package (VASP) www
  • paje.app

    1.98-1+b3 generic visualization tool (Gantt chart and more)
  • paraclu

    9-1 Parametric clustering of genomic and transcriptomic features www
  • paraview

    4.1.0+dfsg+1-1 Parallel Visualization Application www
  • parsinsert

    1.04-1 Parsimonious Insertion of unclassified sequences into phylogenetic trees www
  • paw++

    1:2.14.04.dfsg.2-9+b1 Physics Analysis Workstation (Lesstif-enhanced version) www
  • paw-common

    1:2.14.04.dfsg.2-9 Physics Analysis Workstation (common files) www
  • paw-demos

    1:2.14.04.dfsg.2-9 Physics Analysis Workstation examples and tests www
  • paw

    1:2.14.04.dfsg.2-9+b1 Physics Analysis Workstation - a graphical analysis program www
  • pdb2pqr

    1.9.0+dfsg-1 Preparation of protein structures for electrostatics calculations www
  • pegasus-wms

    4.4.0+dfsg-4 Scientific workflow management system for HTCondor www
  • perlprimer

    1.1.21-2 Graphical design of primers for PCR www
  • perm

    0.4.0-1 efficient mapping of short reads with periodic spaced seeds www
  • phylip

    1:3.696+dfsg-1 package of programs for inferring phylogenies www
  • phyml

    2:20120412-2 Phylogenetic estimation using Maximum Likelihood www
  • phyutility

    2.7.3-1 simple analyses or modifications on both phylogenetic trees and data matrices www
  • picard-tools

    1.113-1 Command line tools to manipulate SAM and BAM files www
  • picosat

    960-1 SAT solver with proof and core support www
  • pktools

    2.5.3-1+b1 GDAL add-on tools to perform useful raster processing www
  • planets

    0.1.13-14 Gravitation simulation of planetary bodies www
  • plastimatch

    1.5.16+dfsg-2 medical image reconstruction and registration www
  • plink

    1.07-3 whole-genome association analysis toolset www
  • poa

    2.0+20060928-3 Partial Order Alignment for multiple sequence alignment www
  • populations

    1.2.33+svn0120106-2.1 population genetic software www
  • pp-popularity-contest

    1.0.6-2+b1 PredictProtein popularity contest www
  • praat

    5.4.0-1 program for speech analysis and synthesis www
  • prank

    0.0.140110-1 Probabilistic Alignment Kit for DNA, codon and amino-acid sequences www
  • predictnls

    1.0.20-1 prediction and analysis of protein nuclear localization signals www
  • predictprotein

    1.1.06-1 suite of protein sequence analysis tools www
  • prime-phylo

    1.0.11-2 bayesian estimation of gene trees taking the species tree into account www
  • primer3

    2.3.6-1 Tool to design flanking oligo nucleotides for DNA amplification www
  • proalign

    0.603-1 Probabilistic multiple alignment program www
  • probabel-examples

    0.4.3-2 Example files for ProbABEL www
  • probabel

    0.4.3-2 Toolset for Genome-Wide Association Analysis www
  • probalign

    1.4-3 multiple sequence alignment using partition function posterior probabilities www
  • probcons-extra

    1.12-9 Extra programs from the probcons package www
  • probcons

    1.12-9 PROBabilistic CONSistency-based multiple sequence alignment www
  • proda

    1.0-8 multiple alignment of protein sequences www
  • prodigal

    mic Version: Prodigal can run in metagenomic mode and analyze Microbial (bacterial and archaeal) gene finding program www
  • profbval

    1.0.22-1 predictor of flexible/rigid protein residues from sequence www
  • profisis

    1.0.11-1 prediction of protein-protein interaction sites from sequence www
  • profnet-bval

    1.0.22-2 neural network architecture for profbval www
  • profnet-chop

    1.0.22-2 neural network architecture for profchop www
  • profnet-con

    1.0.22-2 neural network architecture for profcon www
  • profnet-isis

    1.0.22-2 neural network architecture for profisis www
  • profnet-md

    1.0.22-2 neural network architecture for metadisorder www
  • profnet-norsnet

    1.0.22-2 neural network architecture for norsnet www
  • profnet-prof

    1.0.22-2 neural network architecture for profacc www
  • profnet-snapfun

    1.0.22-2 neural network architecture for snapfun www
  • profphd-net

    1.0.22-2 neural network architecture for profphd www
  • profphd-utils

    1.0.10-1 profphd helper utilities convert_seq and filter_hssp www
  • profphd

    1.0.40-1 secondary structure and solvent accessibility predictor www
  • proftmb

    1.1.12-2 per-residue prediction of bacterial transmembrane beta barrels www
  • proj-bin

    4.8.0-5 Cartographic projection library (tools) www
  • prooftree

    0.12-1+b1 proof-tree visualization for Proof General www
  • psi3

    3.4.0-5 Quantum Chemical Program Suite www
  • psi4-data

    4.0~beta5+dfsg-2 Quantum Chemical Program Suite (data files) www
  • psi4

    4.0~beta5+dfsg-2 Quantum Chemical Program Suite www
  • psychopy

    rsion: 2.7 environment for creating psychology stimuli in Python www
  • psychtoolbox-3-common

    3.0.11.20140816.dfsg1-1 toolbox for vision research -- arch/interpreter independent part www
  • psychtoolbox-3-lib

    3.0.11.20140816.dfsg1-1 toolbox for vision research -- arch-specific parts www
  • pyfai

    0.10.2-1 Fast Azimuthal Integration scripts www
  • pyformex-lib

    0.8.6-4+b1 program to create 3D geometry from Python scripts. www
  • pyformex

    0.8.6-4 program to create 3D geometry from Python scripts. www
  • pymca-data

    4.7.4+dfsg-1 Architecture independent data files for PyMca www
  • pymca

    4.7.4+dfsg-1 Python applications and toolkit for X-ray fluorescence analysis www
  • pymol

    rsion: 2.7 100 , Molecular Graphics System www
  • pythia8-data

    8.1.86-1 PYTHIA8 data files www
  • python-expyriment

    0.7.0+git34-g55a4e7e-3 Python library for cognitive and neuroscientific experiments www
  • python3-fitbitscraper

    0.1-1 Python library for scraping the FitBit website for data www
  • python3-morse-simulator

    1.2.1-2 Multi-OpenRobot Simulation Engine www
  • Back to top
  • Q

  • Rate It
  • qfits-tools

    6.2.0-8 FITS manipulation tools www
  • qgis-api-doc

    2.4.0-1 QGIS API documentation www
  • qgis-common

    2.4.0-1 QGIS - architecture-independent data www
  • qgis-mapserver

    2.4.0-1 Web Map Server for QGIS www
  • qgis-plugin-globe-common

    2.4.0-1 OSG globe plugin for QGIS - architecture-independent data www
  • qgis-plugin-globe

    2.4.0-1 OSG globe plugin for QGIS www
  • qgis-plugin-grass-common

    2.4.0-1 GRASS plugin for QGIS - architecture-independent data www
  • qgis-plugin-grass

    2.4.0-1 GRASS plugin for QGIS www
  • qgis-providers-common

    2.4.0-1 collection of data providers to QGIS - architecture-independent files www
  • qgis-providers

    2.4.0-1 collection of data providers to QGIS www
  • qgis-sqlanywhere

    2.4.0-1 QGIS sql anywhere plugin and provider www
  • qgis

    2.4.0-1 Geographic Information System (GIS) www
  • qiime-data

    1.8.0+dfsg-4 Quantitative Insights Into Microbial Ecology (supporting data) www
  • qiime

    1.8.0+dfsg-4+b1 Quantitative Insights Into Microbial Ecology www
  • qlandkartegt

    1.7.7-3 GPS mapping (GeoTiff and vector) and GPSr management www
  • qmapshack

    0.6.0-1 GPS mapping (GeoTiff and vector) and GPSr management www
  • qmc

    0.94-3 Quine McClusky Simplification Tool
  • qnifti2dicom

    0.4.9-1 convert 3D medical images to DICOM 2D series (gui) www
  • qrisk2

    0.0.r31-1 cardiovascular disease risk calculator www
  • qtdmm

    0.8.13-3 GUI for digital multimeter www
  • qthid-fcd-controller

    4.1-3 Funcube Dongle controller www
  • quantum-espresso-data

    5.1+dfsg-3 Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation) www
  • quantum-espresso

    5.1+dfsg-3 Electronic-Structure and Ab-Initio Molecular Dynamics Suite www
  • quitcount

    3.1.3-2 Small tool which may help yourself quit smoking www
  • qutemol

    0.4.1~cvs20081111-3.2 interactive visualization of macromolecules www
  • Back to top
  • R

  • Rate It
  • rasmol

    2.7.5.2-2 Visualize biological macromolecules www
  • raster3d

    3.0-3-1 tools for generating images of proteins or other molecules www
  • rate4site

    3.0.0-1 detector of conserved amino-acid sites www
  • ray-extra

    2.3.1-1 Scripts and XSL sheets for post-processing for ray www
  • ray

    2.3.1-1 de novo genome assemblies of next-gen sequencing data www
  • rdkit-data

    201403-1 Collection of cheminformatics and machine-learning software (data files) www
  • readseq

    1-11 Conversion between sequence formats www
  • reprof

    1.0.1-1 protein secondary structure and accessibility predictor www
  • rivet-plugins-data

    1.8.3-1.1 Data files of Rivet analysis plugins www
  • rivet-plugins-dev

    1.8.3-1.1 Template generator of Rivet analysis plugin www
  • rivet-plugins

    1.8.3-1.1+b1 Analysis plugins of Rivet www
  • rivet-root-converter

    1.8.3-1.1 Rivet and ROOT file format converter www
  • rivet

    1.8.3-1.1 Robust Independent Validation of Experiment and Theory www
  • rnahybrid

    2.1.1-2 Fast and effective prediction of microRNA/target duplexes www
  • robot-player-dev

    3.0.2+dfsg-4.1+rpi1 Networked server for robots and sensors - development package www
  • robot-player

    3.0.2+dfsg-4.1+rpi1 Networked server for robots and sensors www
  • root-plugin-geom-gdml

    5.34.19+dfsg-1.2+rpi1 GDML import/export module for ROOT geometries www
  • root-plugin-geom-geombuilder

    5.34.19+dfsg-1.2+rpi1 Geometry builder plugin for ROOT www
  • root-plugin-geom-geompainter

    5.34.19+dfsg-1.2+rpi1 Geometry painter plugin for ROOT www
  • root-plugin-graf2d-asimage

    5.34.19+dfsg-1.2+rpi1 AfterImage plugin for ROOT www
  • root-plugin-graf2d-qt

    5.34.19+dfsg-1.2+rpi1 Graf2d Qt plugin for ROOT www
  • root-plugin-graf2d-x11

    5.34.19+dfsg-1.2+rpi1 X window system plugin for ROOT www
  • root-plugin-graf3d-x3d

    5.34.19+dfsg-1.2+rpi1 X 3D plugin for ROOT www
  • root-plugin-gui-fitpanel

    5.34.19+dfsg-1.2+rpi1 GUI element for fits plugin for ROOT www
  • root-plugin-gui-guibuilder

    5.34.19+dfsg-1.2+rpi1 GUI editor plug-in for ROOT www
  • root-plugin-gui-qt

    5.34.19+dfsg-1.2+rpi1 Qt plugin for ROOT www
  • root-plugin-gui-sessionviewer

    5.34.19+dfsg-1.2+rpi1 GUI to browse an interactive PROOF session www
  • root-plugin-hist-hbook

    5.34.19+dfsg-1.2+rpi1 Hbook plugin for ROOT www
  • root-plugin-hist-histpainter

    5.34.19+dfsg-1.2+rpi1 Histogram painter plugin for ROOT www
  • root-plugin-hist-spectrumpainter

    5.34.19+dfsg-1.2+rpi1 Spectrum painter plugin for ROOT www
  • root-plugin-io-sql

    5.34.19+dfsg-1.2+rpi1 SQL plugin for ROOT www
  • root-plugin-io-xml

    5.34.19+dfsg-1.2+rpi1 XML reader plugin for ROOT www
  • root-plugin-math-fftw3

    5.34.19+dfsg-1.2+rpi1 FFTw plugin for ROOT www
  • root-plugin-math-fumili

    5.34.19+dfsg-1.2+rpi1 Fumili plugin for ROOT www
  • root-plugin-math-minuit2

    5.34.19+dfsg-1.2+rpi1 Minuit version 2 plugin for ROOT www
  • root-plugin-montecarlo-pythia8

    5.34.19+dfsg-1.2+rpi1 Pythia version 8 plugin for ROOT www
  • root-plugin-net-globus

    5.34.19+dfsg-1.2+rpi1 Globus plugin for ROOT www
  • root-plugin-net-krb5

    5.34.19+dfsg-1.2+rpi1 Kerberos (version 5) plugin for ROOT www
  • root-plugin-sql-mysql

    5.34.19+dfsg-1.2+rpi1 MySQL client plugin for ROOT www
  • root-plugin-sql-odbc

    5.34.19+dfsg-1.2+rpi1 ODBC plugin for ROOT www
  • root-plugin-sql-pgsql

    5.34.19+dfsg-1.2+rpi1 PostgreSQL client plugin for ROOT www
  • root-plugin-tree-treeviewer

    5.34.19+dfsg-1.2+rpi1 GUI to browse a ROOT tree www
  • root-system-bin

    5.34.19+dfsg-1.2+rpi1 Numerical data analysis framework - general applications www
  • root-system-common

    5.34.19+dfsg-1.2+rpi1 Common files for ROOT www
  • root-system-proofd

    5.34.19+dfsg-1.2+rpi1 Parallel ROOt Facility - distributed, parallel computing www
  • root-system-rootd

    5.34.19+dfsg-1.2+rpi1 ROOT remote file server www
  • root-system

    5.34.19+dfsg-1.2+rpi1 metapackage to install all ROOT packages www
  • rtax

    0.984-2 Classification of sequence reads of 16S ribosomal RNA gene www
  • Back to top
  • S

  • Rate It
  • saga

    2.1.2+dfsg-3 System for Automated Geoscientific Analyses www
  • saint

    2.4.0+dfsg-1 Significance Analysis of INTeractome www
  • salome-kernel

    6.5.0-8.1+b1 Numerical simulation pre- and post-processor www
  • samtools

    0.1.19-1 processing sequence alignments in SAM and BAM formats www
  • saods9-data

    7.3.2+repack-1 Image display tool for astronomy (shared data) www
  • saods9

    7.3.2+repack-1 Image display tool for astronomy www
  • sat4j

    2.3.3-1 Efficient library of SAT solvers in Java www
  • savi

    1.4.6-1 satellite constellation visualisation www
  • sbmltoolbox

    4.1.0-1 libsbml toolbox for octave and matlab www
  • science-astronomy-dev

    1.4 Debian Science Astronomy-dev packages www
  • science-astronomy

    1.4 Debian Science Astronomy packages www
  • science-biology

    1.4 Debian Science Biology packages www
  • science-chemistry

    1.4 Debian Science Chemistry packages www
  • science-config

    1.4 Debian Science Project config package www
  • science-dataacquisition-dev

    1.4 Debian Science data acquisition development packages www
  • science-dataacquisition

    1.4 Debian Science data acquisition packages www
  • science-distributedcomputing

    1.4 Debian Science Distributed Computing packages www
  • science-economics

    1.4 Debian Science Economics packages www
  • science-electronics

    1.4 Debian Science Electronics packages www
  • science-electrophysiology

    1.4 Debian Science packages for Electrophysiology www
  • science-engineering-dev

    1.4 Debian Science Engineering-dev packages www
  • science-engineering

    1.4 Debian Science Engineering packages www
  • science-financial

    1.4 Debian Science financial engineering and computational finance www
  • science-geography

    1.4 Debian Science Geography packages www
  • science-geometry

    1.4 Debian Science geometry packages www
  • science-highenergy-physics-dev

    1.4 Debian Science High Energy Physics development packages www
  • science-highenergy-physics

    1.4 Debian Science High Energy Physics packages www
  • science-imageanalysis

    1.4 Debian Science image analysis packages www
  • science-linguistics

    1.4 Debian Science Linguistics packages www
  • science-logic

    1.4 Debian Science Logic packages www
  • science-machine-learning

    1.4 Debian Science Machine Learning packages www
  • science-mathematics-dev

    1.4 Debian Science Mathematics-dev packages www
  • science-mathematics

    1.4 Debian Science Mathematics packages www
  • science-meteorology-dev

    1.4 Debian Science Meteorology-dev packages www
  • science-meteorology

    1.4 Debian Science Meteorology packages www
  • science-nanoscale-physics-dev

    1.4 Debian Science Nanoscale Physics development packages www
  • science-nanoscale-physics

    1.4 Debian Science Nanoscale Physics packages www
  • science-neuroscience-cognitive

    1.4 Debian Science packages for Cognitive Neuroscience www
  • science-neuroscience-modeling

    1.4 Debian Science packages for modeling of neural systems www
  • science-numericalcomputation

    1.4 Debian Science Numerical Computation packages www
  • science-physics-dev

    1.4 Debian Science Physics-dev packages www
  • science-physics

    1.4 Debian Science Physics packages www
  • science-presentation

    1.4 Debian Science generic tools for presentations www
  • science-psychophysics

    1.4 Debian Science packages for Psychophysics www
  • science-robotics-dev

    1.4 Debian Robotics development packages www
  • science-robotics

    1.4 Debian Robotics packages www
  • science-simulations

    1.4 Debian Science Simulation packages www
  • science-social

    1.4 Debian Science social sciences packages www
  • science-statistics

    1.4 Debian Science Statistics packages www
  • science-tasks

    1.4 Debian Science tasks for tasksel www
  • science-typesetting

    1.4 Debian Science typesetting packages www
  • science-viewing-dev

    1.4 Debian Science development of visualisation applications www
  • science-viewing

    1.4 Debian Science data visualisation packages www
  • seaview

    1:4.5.3.1-2 Multiplatform interface for sequence alignment and phylogeny www
  • seesat5

    0.90.10-1.1 a satellite location program
  • seqan-apps

    1.4.1+dfsg-2 C++ library for the analysis of biological sequences www
  • seqtk

    1.0-1 Fast and lightweight tool for processing sequences in the FASTA or FASTQ format www
  • sextractor

    2.19.5+dfsg-1 Source extractor for astronomical images www
  • shelxle

    1.0.677-1 graphical user interface for SHELXL www
  • shogun-cmdline-static

    3.2.0-7.3 Large Scale Machine Learning Toolbox www
  • sibsim4

    0.20-2 align expressed RNA sequences on a DNA template www
  • sigma-align

    1.1.3-3 Simple greedy multiple alignment of non-coding DNA sequences www
  • sigviewer

    0.5.1+svn556-4 GUI viewer for biosignals such as EEG, EMG, and ECG www
  • sim4

    0.0.20121010-1 tool for aligning cDNA and genomic DNA www
  • simgrid-java

    3.11.1-9 Java bindings for the SimGrid Toolkit www
  • skycat

    3.1.2+starlink1~b-8 Image visualization and access to catalogs and data for astronomy www
  • slang-xfig

    0.2.0~.35-1.1 produce plots and drawings through Xfig's fig2dev in S-Lang www
  • smalt-examples

    0.7.6-4 Sequence Mapping and Alignment Tool (examples) www
  • smalt

    0.7.6-4 Sequence Mapping and Alignment Tool www
  • snap

    2013-11-29-1 location of genes from DNA sequence with hidden markov model www
  • snp-sites

    1.5.0-1 Binary code for the package snp-sites www
  • spass

    3.7-3 An automated theorem prover for first-order logic with equality
  • spatialite-bin

    4.1.1-4 Geospatial extension for SQLite - tools www
  • spd

    1.3.0-1 Synchrotron image corrections and azimuthal integration www
  • splash

    2.5.0-1 Visualisation tool for Smoothed Particle Hydrodynamics simulation www
  • squizz

    0.99b+dfsg-3 Converter for genetic sequences and alignments www
  • ssake-examples

    3.8.2-1 example data for SSAKE, a genomic assembler of short reads www
  • ssake

    3.8.2-1 genomics application for assembling millions of very short DNA sequences www
  • staden-common

    2.0.0+b10-1.1 Architecture independent files for Staden www
  • staden-io-lib-examples

    1.13.7-1 programs for maniuplating DNA sequencing files www
  • staden-io-lib-utils

    1.13.7-1 programs for maniuplating DNA sequencing files www
  • staden

    2.0.0+b10-1.1 DNA sequence assembly (Gap4/Gap5), editing and analysis tools www
  • stardata-common

    0.8 Common framework to manage astronomy packages www
  • starplot

    0.95.5-8.1 3-dimensional perspective star map viewer www
  • starpu-examples

    1.1.3+dfsg-3+b1 Task scheduler for heterogeneous multicore machines - exs www
  • stellarium-data

    0.13.1-1 Stellarium data files www
  • stellarium

    0.13.1-1 real-time photo-realistic sky generator www
  • step

    4:4.14.2-1 interactive physical simulator for KDE www
  • stimfit

    0.13.19-1 Program for viewing and analyzing electrophysiological data www
  • sumo

    0.21.0+dfsg-1 Simulation of Urban MObility (SUMO) www
  • survex-aven

    1.2.16-1 sophisticated cave survey viewer for Survex www
  • survex-svxedit

    1.2.16-1 survey data editor for Survex www
  • survex

    1.2.16-1 cave surveying and mapping software www
  • swarp

    2.19.1-1 resample and co-add together FITS images www
  • swe-basic-data

    1.80.00.0002-1 basic data files for the libswe package www
  • swe-standard-data

    00004-1 standard data for the Swiss Ephemeris www
  • syrthes-gui

    4.1.1-dfsg1-5 Transient thermal simulations in complex solid geometries - GUI www
  • syrthes-tests

    4.1.1-dfsg1-5 Test cases for SYRTHES www
  • syrthes-tools

    4.1.1-dfsg1-5 Transient thermal simulations in complex solid geometries - tools www
  • syrthes

    4.1.1-dfsg1-5 Transient thermal simulations in complex solid geometries www
  • Back to top
  • T

  • Rate It
  • t-coffee-examples

    11.00.8cbe486-1 annotated examples for the use of T-Coffee www
  • t-coffee

    11.00.8cbe486-1 Multiple Sequence Alignment www
  • tabix

    0.2.6-2 generic indexer for TAB-delimited genome position files www
  • tandem-mass

    1:2013.09.01-2 mass spectrometry software for protein identification www
  • tcd-utils

    20061127-2 convert Tide Constituent Database (TCD) files
  • terraintool

    1.12a-1 Generates survex format terrain models from SRTM and ASTER data www
  • tessa-mpi

    0.3.1-6.1 simulation of 3D optical systems using FDTD on MPI clusters
  • tessa

    0.3.1-6.1 simulation of 3D optical systems with the FDTD method
  • thepeg-gui

    1.8.0-1 Java GUI of ThePEG www
  • thepeg-reference

    1.8.0-1 Code reference of ThePEG www
  • thepeg

    1.8.0-1 Toolkit for High Energy Physics Event Generation www
  • therion-viewer

    5.3.15-2 Cave surveying - 3D viewer for therion models
  • therion

    5.3.15-2 Cave surveying - 2D and 3D drawing software
  • theseus

    3.0.0-1 superimpose macromolecules using maximum likelihood www
  • tigr-glimmer

    3.02-3 Gene detection in archea and bacteria www
  • timbl

    6.4.4-4 Tilburg Memory Based Learner www
  • timblserver

    1.7-4 Server extensions for Timbl www
  • tm-align

    20140601+dfsg-1 structual alignment of proteins www
  • tophat

    2.0.10-1 fast splice junction mapper for RNA-Seq reads www
  • topp

    1.11.1-5 set of programs implementing The OpenMS Proteomic Pipeline www
  • transcalc

    0.14-5 microwave and RF transmission line calculator www
  • transtermhp

    2.09-2 find rho-independent transcription terminators in bacterial genomes www
  • travis

    140902-1 trajectory analyzer and visualizer www
  • tree-ppuzzle

    5.2-7+b1 Parallelized reconstruction of phylogenetic trees by maximum likelihood www
  • tree-puzzle

    5.2-7+b1 Reconstruction of phylogenetic trees by maximum likelihood www
  • treeviewx

    0.5.1+20100823-3 Displays and prints phylogenetic trees www
  • trimmomatic

    0.32+dfsg-4 flexible read trimming tool for Illumina NGS data www
  • tunnelx

    20140102-2 Cave Survey drawing software www
  • twms

    0.05t-2 tiny web map service www
  • Back to top
  • U

  • Rate It
  • uc-echo

    1.12-7 error correction algorithm designed for short-reads from NGS www
  • ucto

    0.5.3-3.1+b1 Unicode Tokenizer www
  • uhd-host

    3.7.3-1 universal hardware driver for Ettus Research products www
  • units-filter

    3.7-1 Parser for expressions concerning physical values
  • urg-utils

    0.8.18-2 utilities for Hokuyo URG/UTM laser range scanners
  • Back to top
  • V

  • Rate It
  • v-sim-common

    3.7.1-1 Visualize atomic structures (support files) www
  • v-sim-plugins

    3.7.1-1 Plugins for V_Sim (a 3D visualization package) www
  • v-sim

    3.7.1-1 Visualize atomic structures www
  • vcftools

    0.1.12+dfsg-1 Collection of tools to work with VCF files www
  • velvet-example

    1.2.10+dfsg1-1 Example data for the Velvet sequence assembler www
  • velvet-long

    1.2.10+dfsg1-1 Nucleic acid sequence assembler for very short reads, long version www
  • velvet-tests

    1.2.10+dfsg1-1 Test data for the Velvet sequence assembler www
  • velvet

    1.2.10+dfsg1-1 Nucleic acid sequence assembler for very short reads www
  • velvetoptimiser

    2.2.5-2 automatically optimise Velvet do novo assembly parameters www
  • veusz-helpers

    1.21.1-1 Architecture-specific helper module for Veusz www
  • veusz

    1.21.1-1 2D scientific plotting application with graphical interface www
  • via-bin

    2.0.4-2 tools for volumetric image analysis www
  • viewmol

    2.4.1-22 A graphical front end for computational chemistry programs. www
  • visp-images-data

    2.9.0-2 visual servoing library - reference files www
  • vistrails

    2.1.1-1 Science visualisation workflow toolkit www
  • volview

    3.4+dfsg-1+b1 Advanced volume visualization tool www
  • votca-csg-scripts

    1.2.4-1 VOTCA's coarse-graining scripts www
  • votca-csg-tutorials

    1.2.4-1 VOTCA's coarse-graining tutorials www
  • votca-csg

    1.2.4-1 VOTCA's coarse-graining engine www
  • vowpal-wabbit

    7.3-1.1 fast and scalable online machine learning algorithm www
  • voxbo

    1.8.5~svn1246-1.1 processing, statistical analysis, and display of brain imaging data www
  • Back to top
  • W

  • Rate It
  • wcslib-tools

    4.24-1 Command line tools utilizing wcslib www
  • wcstools

    3.9.0+dfsg-1 Handle the WCS of a FITS image www
  • weka

    3.6.11-1 Machine learning algorithms for data mining tasks www
  • wfrog

    0.8.2+svn953-1 Web-based customizable weather station software www
  • wigeon

    20101212+dfsg-1 reimplementation of the Pintail 16S DNA anomaly detection utility www
  • wise

    2.4.1-17 comparison of biopolymers, like DNA and protein sequences www
  • wxastrocapture

    1.8.1+git20140821+dfsg-1 Windows linuX Astronomy Capture www
  • Back to top
  • X

  • Rate It
  • xbs

    0-8 3-d models and movies of molecules
  • xcrysden-data

    1.5.60-1 Crystalline and Molecular Structure Visualizer (Data Files) www
  • xcrysden

    1.5.60-1 Crystalline and Molecular Structure Visualizer www
  • xdrawchem

    2.0-3 Chemical structures and reactions editor
  • xflr5

    6.09.06-2 analysis tool for airfoils www
  • xfoil

    6.99.dfsg-2 program for the design and analysis of subsonic airfoils www
  • xmakemol-gl

    5.16-7 program for visualizing atomic and molecular systems (OpenGL) www
  • xmakemol

    5.16-7 program for visualizing atomic and molecular systems www
  • xmds2

    2.2.2+dfsg-1 eXtensible Multi-Dimensional Simulator www
  • xmds

    1.6.6-7 eXtensible Multi-Dimensional Simulator www
  • xpa-tools

    2.1.15-4 Tools for seamless communication between Unix programs www
  • xplot-xplot.org

    0.90.7.1-2 fast tool to graph and visualize lots of data www
  • xplot

    1.19-9 simple on-screen x-y column data plotter
  • xppaut

    6.11b+1.dfsg-1 Phase Plane Plus Auto: Solves many kinds of equations www
  • xtide-coastline

    20020202-1 coastline data for xtide
  • xtide-data

    20100529-1 Harmonics data for xtide www
  • xtide

    2.13.2-1 provides tide and current predictions www
  • xyscan

    3.33-1 data thief for scientists www
  • Back to top
  • Y

  • Rate It
  • yade

    1.12.0-2 Platform for discrete element modeling www
  • yagv

    0.4~20130422.r5bd15ed+dfsg-1 yet another G-code viewer www
  • ygraph

    0.16~cvs20090218-1.2 plot and animate data sets
  • yorick-av

    0.0.3-3+b1 write movies from Yorick in various formats www
  • yorick-cubeview

    2.2-2 3D FITS data viewer specialized in spectro-imaging www
  • yorick-curses

    0.1-6 interface to the (n)curses library for the Yorick language
  • yorick-data

    2.2.03+dfsg-3 interpreted library for the Yorick language www
  • yorick-dev

    2.2.03+dfsg-3 development files for the Yorick interpreted language www
  • yorick-full

    2.2.03+dfsg-3 full installation of the Yorick interpreter and add-ons www
  • yorick-gl

    1.1+cvs20070922+dfsg-6.1 OpenGL 3D graphics support for the Yorick language www
  • yorick-gy

    0.0.5-1 GObject introspection and Gtk bindings for Yorick www
  • yorick-gyoto

    0.2.3-1 General relativistic geodesic integration for the Yorick language www
  • yorick-hdf5

    0.8.0-5+b1 Hierarchical Data Format 5 interface for the Yorick language
  • yorick-imutil

    0.5.7-3 fast image manipulation routines for the Yorick language
  • yorick-mira

    0.9.10+dfsg-1 optical interferometry image reconstruction within Yorick www
  • yorick-ml4

    0.6.0-3 Matlab file format support for the Yorick language
  • yorick-mpeg

    0.1-3 MPEG output support for the Yorick language www
  • yorick-mpy-common

    2.2.03+dfsg-3 Message Passing Yorick (common files) www
  • yorick-mpy-mpich2

    2.2.03+dfsg-3 Message Passing Yorick (MPICH2 build) www
  • yorick-mpy-openmpi

    2.2.03+dfsg-3 Message Passing Yorick (OpenMPI build) www
  • yorick-optimpack

    1.3.2+dfsg-1 optimization of large scale problems for the Yorick language www
  • yorick-soy

    1.4.0-3 sparse matrix operations for the Yorick language www
  • yorick-spydr

    0.8.2-3 FITS image display and simple analysis www
  • yorick-svipc

    0.16-2 interprocess communication (shared memory...) for Yorick www
  • yorick-yao

    5.4.0-1 Yorick-based adaptive optics system simulator www
  • yorick-yeti-fftw

    6.3.3-2 FFT plugin for the Yorick language www
  • yorick-yeti-gsl

    6.3.3-2 dummy transitional package www
  • yorick-yeti-regex

    6.3.3-2 POSIX regular expressions for the Yorick language www
  • yorick-yeti-tiff

    6.3.3-2 TIFF image format input for the Yorick language www
  • yorick-yeti

    6.3.3-2 utility plugin for the Yorick language www
  • yorick-ygsl

    1.2.0-1 GSL special functions plugin for the Yorick language www
  • yorick-ynfft

    1.0.2-2 nonequispaced fast Fourier transform for Yorick www
  • yorick-yutils

    1.5.2-1 various utilities for the Yorick language
  • yorick-z

    1.2.0+cvs20080115-5 zlib, jpeg and png support for the Yorick language www
  • yorick

    2.2.03+dfsg-3 interpreted language and scientific graphics www
  • Back to top
  • Z

  • Rate It
  • z88-data

    13.0.0+dfsg2-3 Finite Element Analysis Program - data www
  • z88

    13.0.0+dfsg2-3 Finite Element Analysis Program - runtime www
  • zalign

    0.9.1-1+b1 parallel local alignment of biological sequences www
  • zegrapher

    2.0-4 plotting mathematical functions and sequences on the plane www
  • zimpl

    3.3.2-1 mathematical modeling language for optimization problems www
  • ztex-bmp

    20120314-2 universal macro processor www
Last modified on Sunday, 17 January 2016 12:25
Google

Leave a comment

Comments for Guest and account owners. Account owners will need to login to use registered e-mail address.

Additional information