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Raspberry Pi OS Software Packages

Raspberry Pi OS is the offical operating system of the Raspberry Pi (previously known as Raspbian). Though not the only Operarting Systems the Raspberry Pi can use, it is the one that has the setup and software managed by the Raspberry Pi foundation. Raspberry Pi OS is a Linux OS based on Debian. As with all Linux distributions there are 1000's of free Open Source programs that can be downloaded from a Terminal Screen or a Desktop app. This section list the 1000's of programs that can be downloaded for the current version of Raspberry Pi OS, Buster version 10 and the previouse version, Stretch.

Science Packages

raspberry Science related packages

To install Raspberry Pi OS software on a Raspberry Pi

Packages are installed using Terminal. First get an updated package list by entering the following command in to terminal if this has not been done today sudo apt update
Then install your chosen package with the command sudo apt install package name Find out more with the Guide to installing software with the apt command

WWW: Please Note: each listing has a www link to a related webpage, the links are supplied by the author. I can not guarantee thay are all active and related to the listed package.

Distro Version:

The latest Distro for Raspberry Pi OS is Buster, the previouse version was Stretch. Next to each package is the version available for each distro.

Buster(#) = Raspberry Pi OS Buster
Stretch(#) = Raspberry Pi OS Stretch
Buster & Stretch(#) = same version for both.
If only one Distro is listed then the package is only available on that distribution.

Jump to section A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

SCIENCE

Last Updated: 05 July, 2021

  • 3depict

    Buster:(0.0.21-1) Stretch:(0.0.19-1) visualisation and analysis for single valued point data www
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  • A

  • abacas

    Buster:(1.3.1-5) Stretch:(1.3.1-3) close gaps in genomic alignments from short reads www

  • abinit

    Buster:(8.8.4-2) Stretch:(8.0.8-1) package for electronic structure calculations www

  • abyss

    Buster:(2.1.5-7) Stretch:(2.0.2-2) de novo, parallel, sequence assembler for short reads www

  • acedb-other

    Buster:(4.9.39+dfsg.02-4) Stretch:(4.9.39+dfsg.02-1) retrieval of DNA or protein sequences www

  • acedb-other-belvu

    Buster:(4.9.39+dfsg.02-4) Stretch:(4.9.39+dfsg.02-1) transitional package for belvu www

  • acedb-other-dotter

    Buster:(4.9.39+dfsg.02-4) Stretch:(4.9.39+dfsg.02-1) transitional package for dotter www

  • aces3

    Buster:(3.0.8-6) Stretch:(3.0.8-5.1+rpi1) Advanced Concepts in Electronic Structure III www

  • aces3-data

    Buster:(3.0.8-6) Stretch:(3.0.8-5.1+rpi1) Advanced Concepts in Electronic Structure III www

  • achilles

    Buster:(2-9) Stretch:(2-8.2) Artificial life and evolution simulator www

  • adapterremoval

    Buster:(2.2.3-1) Stretch:(2.2.0-1) rapid adapter trimming, identification, and read merging of gene sequences www

  • adapterremoval-examples

    Buster:(2.2.3-1) Stretch:(2.2.0-1) rapid adapter trimming, identification, and read merging (example data) www

  • adms

    Buster:(2.3.6-2) Automatic device model synthesizer for Verilog-AMS www

  • adun-core

    Buster:(0.81-13) Stretch:(0.81-9+b1) Molecular Simulator www

  • adun.app

    Buster:(0.81-13) Stretch:(0.81-9+b1) Molecular Simulator for GNUstep (GUI) www

  • aegean

    Buster:(0.16.0+dfsg-1) Stretch:(0.15.2+dfsg-1) integrated genome analysis toolkit www

  • aeskulap

    Buster:(0.2.2-beta2+git20180219.8787e95-2) Stretch:(0.2.2b1+git20161206-1) medical image viewer and DICOM network client www

  • aevol

    Buster:(5.0-2) Stretch:(4.4-1) digital genetics model to run Evolution Experiments in silico www

  • aghermann

    Buster:(1.1.2-2) Stretch:(1.1.2-1) Sleep-research experiment manager www

  • aladin

    Buster:(10.076+dfsg-1) Interactive sky atlas for astronomical images and datasets www

  • alfa

    Buster:(1.0-3+b1) Stretch:(1.0-2) Automated Line Fitting Algorithm www

  • algotutor

    Buster:(0.8.6-2) Stretch:(0.8.6-1) program for observing the intermediate steps of algorithm www

  • alien-hunter

    Buster:(1.7-7) Stretch:(1.7-5) Interpolated Variable Order Motifs to identify horizontally acquired DNA www

  • altree

    Buster:(1.3.1-7+b1) Stretch:(1.3.1-4+b2) program to perform phylogeny-based association and localization analysis www

  • altree-examples

    Buster:(1.3.1-7) Stretch:(1.3.1-4) example files for ALTree www

  • amap-align

    Buster:(2.2+git20080214.600fc29+dfsg-1) Stretch:(2.2-6) Protein multiple alignment by sequence annealing www

  • ampliconnoise

    Buster:(1.29-8) Stretch:(1.29-6) removal of noise from 454 sequenced PCR amplicons www

  • andi

    Buster:(0.12-4) Stretch:(0.10-2) Efficient Estimation of Evolutionary Distances www

  • anfo

    Buster:(0.98-7+b1) Stretch:(0.98-5) Short Read Aligner/Mapper from MPG www

  • aoflagger

    Buster:(2.13.0-1) Stretch:(2.9.0-1) Find RFI in radio astronomical observations www

  • apbs

    Buster & Stretch:(1.4-1) Adaptive Poisson Boltzmann Solver www

  • apertium

    Buster:(3.5.2-1) Stretch:(3.4.0~r61013-5) Shallow-transfer machine translation engine www

  • apertium-af-nl

    Buster:(0.2.0~r58256-2) Stretch:(0.2.0~r58256-1) Apertium translation data for the Afrikaans-Dutch pair www

  • apertium-all-dev

    Buster:(3.5.2-1) Metapackage for all tools required for Apertium development www

  • apertium-apy

    Buster:(0.11.4-2) Stretch:(0.9.1~r343-2) Apertium APY service www

  • apertium-arg

    Buster:(0.1.2~r65494-2) Stretch:(0.1.2~r65494-1) Apertium single language data for Aragonese www

  • apertium-arg-cat

    Buster:(0.1.0~r64925-2) Stretch:(0.1.0~r64925-1) Apertium translation data for the Aragonese-Catalan pair www

  • apertium-bel

    Buster:(0.1.0~r81357-2) Apertium single language data for Belarusian www

  • apertium-bel-rus

    Buster:(0.2.0~r81186-2) Apertium translation data for the Belarusian-Russian pair www

  • apertium-br-fr

    Buster:(0.5.0~r61325-3) Stretch:(0.5.0~r61325-2) Apertium linguistic data to translate between Breton and French www

  • apertium-ca-it

    Buster:(0.1.1~r57554-2) Stretch:(0.1.1~r57554-1) Apertium translation data for the Catalan-Italian pair www

  • apertium-cat

    Buster:(2.6.0-1) Stretch:(1.0.0~r65787-1) Apertium single language data for Catalan www

  • apertium-cat-srd

    Buster:(1.0.0~r82995-2) Apertium translation data for the Catalan-Sardinian pair www

  • apertium-crh

    Buster:(0.2.0~r83161-2) Apertium single language data for Crimean Tatar www

  • apertium-crh-tur

    Buster:(0.3.0~r83159-2) Apertium translation data for the Crimean Tatar-Turkish pair www

  • apertium-cy-en

    Buster:(0.1.1~r57554-4) Stretch:(0.1.1~r57554-3) Apertium translation data for the Welsh-English pair www

  • apertium-dan

    Buster:(0.5.0~r67099-2) Stretch:(0.5.0~r67099-1) Apertium single language data for Danish www

  • apertium-dan-nor

    Buster:(1.3.0~r67099-2) Stretch:(1.3.0~r67099-1) Apertium translation data for the Danish-Norwegian pair www

  • apertium-dev

    Buster:(3.5.2-1) Stretch:(3.4.0~r61013-5) Development tools and library for Apertium www

  • apertium-en-gl

    Buster:(0.5.2~r57551-2) Stretch:(0.5.2~r57551-1) Apertium translation data for the English-Galician pair www

  • apertium-eo-en

    Buster:(1.0.0~r63833-2) Stretch:(1.0.0~r63833-1) Apertium linguistic data to translate between Esperanto and English www

  • apertium-eo-fr

    Buster:(0.9.0~r57551-2) Stretch:(0.9.0~r57551-1) Apertium translation data for the Esperanto-French pair www

  • apertium-es-ast

    Buster:(1.1.0~r51165-2) Stretch:(1.1.0~r51165-1) Apertium translation data for the Spanish-Asturian pair www

  • apertium-es-it

    Buster:(0.2.0~r78826-2) Stretch:(0.1.0~r51165-1) Transitional dummy package for apertium-spa-ita www

  • apertium-eu-en

    Buster:(0.3.1~r56205-2) Stretch:(0.3.1~r56205-1) Apertium translation data for the Basque-English pair www

  • apertium-fra

    Buster:(1.5.0-1) Stretch:(1.0.0~r65786-1) Apertium single language data for French www

  • apertium-fra-cat

    Buster:(1.5.0-1) Stretch:(1.1.0~r64309-1) Apertium translation data for the French-Catalan pair www

  • apertium-hbs

    Buster:(0.5.0~r68212-3) Stretch:(0.5.0~r68212-2) Apertium single language data for Serbo-Croatian www

  • apertium-hbs-eng

    Buster:(0.1.0~r57598-2) Stretch:(0.1.0~r57598-1) Apertium translation data for the Serbo-Croatian - English pair www

  • apertium-hbs-mkd

    Buster:(0.1.0~r76450-2.1) Stretch:(0.1.0~r57554-1) Apertium translation data for the Serbo-Croatian-Macedonian pair www

  • apertium-hbs-slv

    Buster:(0.1.0~r59294-2) Stretch:(0.1.0~r59294-1) Apertium translation data for the Serbo-Croatian-Slovenian pair www

  • apertium-hin

    Buster:(0.1.0~r59158-2) Stretch:(0.1.0~r59158-1) Apertium single language data for Hindi www

  • apertium-id-ms

    Buster:(0.1.1~r57551-2) Stretch:(0.1.1~r57551-1) Apertium translation data for the Indonesian-Malay pair www

  • apertium-is-sv

    Buster:(0.1.0~r76450-2) Stretch:(0.1.0~r56030-1) Apertium translation data for the Icelandic-Swedish pair www

  • apertium-isl

    Buster:(0.1.0~r65494-2) Stretch:(0.1.0~r65494-1) Apertium single language data for Icelandic www

  • apertium-isl-eng

    Buster:(0.1.0~r66083-2) Stretch:(0.1.0~r66083-1) Apertium translation data for the Icelandic-English pair www

  • apertium-ita

    Buster:(0.10.0~r82237-2) Stretch:(0.9.0~r72553-1) Apertium single language data for Italian www

  • apertium-kaz

    Buster:(0.1.0~r61338-2) Stretch:(0.1.0~r61338-1) Apertium single language data for Kazakh www

  • apertium-kaz-tat

    Buster:(0.2.1~r57554-2) Stretch:(0.2.1~r57554-1) Apertium translation data for the Kazakh-Tatar pair www

  • apertium-lex-tools

    Buster:(0.2.1-1) Stretch:(0.1.1~r66150-1) Constraint-based lexical selection module www

  • apertium-mk-bg

    Buster:(0.2.0~r49489-2) Stretch:(0.2.0~r49489-1) Apertium translation data for the Macedonian-Bulgarian pair www

  • apertium-mk-en

    Buster:(0.1.1~r57554-2) Stretch:(0.1.1~r57554-1) Apertium translation data for the Macedonian-English pair www

  • apertium-mlt-ara

    Buster:(0.2.0~r62623-2) Stretch:(0.2.0~r62623-1) Apertium translation data for the Maltese-Arabic pair www

  • apertium-nno

    Buster:(0.9.0~r69513-3) Stretch:(0.9.0~r69513-1) Apertium single language data for Norwegian Nynorsk www

  • apertium-nno-nob

    Buster:(1.1.0~r66076-2) Stretch:(1.1.0~r66076-1) Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair www

  • apertium-nob

    Buster:(0.9.0~r69513-2) Stretch:(0.9.0~r69513-1) Apertium single language data for Norwegian Bokmål www

  • apertium-oci

    Buster:(0.1.0-1) Apertium single language data for Occitan www

  • apertium-pol

    Buster:(0.1.1-1) Apertium single language data for Polish www

  • apertium-rus

    Buster:(0.2.0~r82706-1) Apertium single language data for Russian www

  • apertium-separable

    Buster:(0.3.2-1) Reordering separable/discontiguous multiwords www

  • apertium-sme-nob

    Buster:(0.6.0~r61921-2) Stretch:(0.6.0~r61921-1) Apertium translation data for the Northern Sami-Norwegian Bokmål pair www

  • apertium-spa

    Buster:(1.1.0~r79716-2) Stretch:(0.1.0~r65494-1) Apertium single language data for Spanish www

  • apertium-spa-arg

    Buster:(0.4.0~r64399-2) Stretch:(0.4.0~r64399-1) Apertium translation data for the Spanish-Aragonese pair www

  • apertium-spa-cat

    Buster:(2.1.0~r79717-2) Apertium translation data for the Spanish-Catalan pair www

  • apertium-spa-ita

    Buster:(0.2.0~r78826-2) Apertium translation data for the Spanish-Italian pair www

  • apertium-srd

    Buster:(1.2.0~r82994-2) Stretch:(0.9.0~r72792-1) Apertium single language data for Sardinian www

  • apertium-srd-ita

    Buster:(0.9.5~r82237-2) Stretch:(0.9.0~r72554-1) Apertium translation data for the Sardinian-Italian pair www

  • apertium-swe

    Buster:(0.7.0~r69513-2) Stretch:(0.7.0~r69513-1) Apertium single language data for Swedish www

  • apertium-swe-dan

    Buster:(0.7.0~r66063-2) Stretch:(0.7.0~r66063-1) Apertium translation data for the Swedish-Danish pair www

  • apertium-swe-nor

    Buster:(0.2.0~r69544-2) Apertium translation data for the Swedish-Norwegian pair www

  • apertium-szl

    Buster:(0.1.0-1) Apertium single language data for Silesian www

  • apertium-tat

    Buster:(0.1.0~r60887-2) Stretch:(0.1.0~r60887-1) Apertium single language data for Tatar www

  • apertium-tur

    Buster:(0.2.0~r83161-2) Apertium single language data for Turkish www

  • apertium-ukr

    Buster:(0.1.0~r82563-2) Apertium single language data for Ukrainian www

  • apertium-urd

    Buster:(0.1.0~r61311-2) Stretch:(0.1.0~r61311-1) Apertium single language data for Urdu www

  • apertium-urd-hin

    Buster:(0.1.0~r64379-2) Stretch:(0.1.0~r64379-1) Apertium translation data for the Urdu-Hindi pair www

  • aragorn

    Buster:(1.2.38-2) Stretch:(1.2.38-1) tRNA and tmRNA detection in nucleotide sequences www

  • arb-common

    Buster:(6.0.6-4) Stretch:(6.0.6-1) phylogenetic sequence analysis suite - common files www

  • arden

    Buster:(1.0-4) Stretch:(1.0-3) specificity control for read alignments using an artificial reference www

  • art-nextgen-simulation-tools

    Buster:(20160605+dfsg-3) Stretch:(20160605+dfsg-2) simulation tools to generate synthetic next-generation sequencing reads www

  • art-nextgen-simulation-tools-profiles

    Buster:(20160605+dfsg-3) Stretch:(20160605+dfsg-2) profiles for art simulation tools www

  • artfastqgenerator

    Buster:(0.0.20150519-3) Stretch:(0.0.20150519-2) outputs artificial FASTQ files derived from a reference genome www

  • artfastqgenerator-examples

    Buster:(0.0.20150519-3) Stretch:(0.0.20150519-2) ou7puts artificial FASTQ files derived from a reference genome (examples) www

  • asdftool

    Buster:(2.3.2-2) Stretch:(1.2.1-2) Command line tool to manipulate ASDF scientific data files www

  • ase

    Buster:(3.17.0-2) Atomic Simulation Environment www

  • ask

    Buster:(1.1.1-3) Stretch:(1.1.1-1) Adaptive Sampling Kit for big experimental spaces www

  • assemblytics

    Buster:(1.0+ds-1) detect and analyze structural variants from a genome assembly www

  • astro-tasks

    Buster:(2.0) Stretch:(1.0) Debian Astronomy Pure Blend (tasksel tasks) www

  • astromatic

    Buster & Stretch:(1.1) Astronomical pipeline software collection www

  • astrometry-data-2mass

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader www

  • astrometry-data-2mass-00

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (2'-2.8') www

  • astrometry-data-2mass-01

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (2.8'-4') www

  • astrometry-data-2mass-02

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (4'-5.6') www

  • astrometry-data-2mass-03

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (5.6'-8') www

  • astrometry-data-2mass-04

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (8'-11') www

  • astrometry-data-2mass-05

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (11'-16') www

  • astrometry-data-2mass-06

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (16'-22') www

  • astrometry-data-2mass-07

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (22'-30') www

  • astrometry-data-2mass-08-19

    Buster & Stretch:(1.1) Astrometry.net 2MASS index files downloader (30'-2000') www

  • astrometry-data-tycho2

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 index files www

  • astrometry-data-tycho2-07

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 index files (22'-30') www

  • astrometry-data-tycho2-07-bigendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 big endian index files (22'-30') www

  • astrometry-data-tycho2-07-littleendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 little endian index files (22'-30') www

  • astrometry-data-tycho2-08

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 index files (30'-44') www

  • astrometry-data-tycho2-08-bigendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 big endian index files (30'-44') www

  • astrometry-data-tycho2-08-littleendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 little endian index files (30'-44') www

  • astrometry-data-tycho2-09

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 index files (44'-60') www

  • astrometry-data-tycho2-09-bigendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 big endian index files (44'-60') www

  • astrometry-data-tycho2-09-littleendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 little endian index files (44'-60') www

  • astrometry-data-tycho2-10-19

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 index files (60'-2000') www

  • astrometry-data-tycho2-10-19-bigendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 big endian index files (60'-2000') www

  • astrometry-data-tycho2-10-19-littleendian

    Buster:(2-4) Stretch:(2-3) Astrometry.net Tycho-2 little endian index files (60'-2000') www

  • astrometry.net

    Buster:(0.76+dfsg-3+b2) Stretch:(0.70+dfsg-1) Astrometry plate solver www

  • astronomical-almanac

    Buster:(5.6-6) Stretch:(5.6-4) astronomical almanac - calculate planet and star positions www

  • astropy-utils

    Buster:(3.1.2-2) Stretch:(1.3-8) Command line tools from astropy www

  • atac

    Buster:(0~20150903+r2013-6+b3) Stretch:(0~20150903+r2013-3+b2) genome assembly-to-assembly comparison www

  • augustus

    Buster:(3.3.2+dfsg-2) Stretch:(3.2.3+dfsg-1) gene prediction in eukaryotic genomes www

  • augustus-data

    Buster:(3.3.2+dfsg-2) Stretch:(3.2.3+dfsg-1) data files for AUGUSTUS www

  • autodock

    Buster:(4.2.6-6) Stretch:(4.2.6-3) analysis of ligand binding to protein structure www

  • autodock-getdata

    Buster:(4.2.6-6) Stretch:(4.2.6-3) instructions for getData to collect compounds www

  • autodock-test

    Buster:(4.2.6-6) Stretch:(4.2.6-3) test files for AutoDock www

  • autodock-vina

    Buster:(1.1.2-5) Stretch:(1.1.2-3+b1) docking of small molecules to proteins www

  • autodocktools

    Buster & Stretch:(1.5.7-2) GUI to help set up, launch and analyze AutoDock dockings www

  • autogrid

    Buster:(4.2.6-6) Stretch:(4.2.6-3) pre-calculate binding of ligands to their receptor www

  • autogrid-test

    Buster:(4.2.6-6) Stretch:(4.2.6-3) test files for AutoGrid www

  • avce00

    Buster:(2.0.0-7) Stretch:(2.0.0-5) Conversion of ESRI Arcinfo Vector Coverage in E00 format www

  • avogadro

    Buster:(1.2.0-4+b1) Stretch:(1.2.0-1+deb9u1) Molecular Graphics and Modelling System www

  • avogadro-data

    Buster:(1.2.0-4) Stretch:(1.2.0-1+deb9u1) Molecular Graphics and Modelling System (Data Files) www

  • aweather

    Buster:(0.8.1-1.1+b1) Stretch:(0.8.1-1.1) Advanced Weather Monitoring Program www

  • axe-demultiplexer

    Buster:(0.3.3+dfsg-1) Stretch:(0.3.2+dfsg1-1) Trie-based DNA sequencing read demultiplexer www
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  • B

  • baitfisher

    Buster:(1.2.7+git20180107.e92dbf2+dfsg-1) software package for designing hybrid enrichment probes www

  • bali-phy

    Buster:(3.4+dfsg-1) Bayesian Inference of Alignment and Phylogeny www

  • bamtools

    Buster:(2.5.1+dfsg-3) Stretch:(2.4.1+dfsg-1) toolkit for manipulating BAM (genome alignment) files www

  • bandage

    Buster:(0.8.1-1) Bioinformatics Application for Navigating De novo Assembly Graphs Easily www

  • barrnap

    Buster:(0.9+dfsg-1) Stretch:(0.7+dfsg-2) rapid ribosomal RNA prediction www

  • bart

    Buster:(0.4.04-2) Stretch:(0.4.00-1) tools for computational magnetic resonance imaging www

  • bart-view

    Buster:(0.1.00-2) viewer for multi-dimensional complex-valued data www

  • bauble

    Buster & Stretch:(0.9.7-2.1) biodiversity collection manager software application www

  • bcbio

    Buster:(1.1.2-3) toolkit for analysing high-throughput sequencing data www

  • bcbio-doc

    Buster:(1.1.2-3) Documentation for RNAseq-workflows of bcbio(-nextgen) www

  • bcftools

    Buster:(1.9-1) Stretch:(1.3.1-1) genomic variant calling and manipulation of VCF/BCF files www

  • beads

    Buster:(1.1.18+dfsg-3) 2-DE electrophoresis gel image spot detection www

  • beagle

    Buster:(5.0-180928+dfsg-1+deb10u1) Stretch:(4.1~160727-86a+dfsg-1) Genotype calling, genotype phasing and imputation of ungenotyped markers www

  • beast-mcmc

    Buster:(1.10.4+dfsg-1) Stretch:(1.8.4+dfsg.1-1) Bayesian MCMC phylogenetic inference www

  • beast2-mcmc

    Buster:(2.5.1+dfsg-2) Stretch:(2.4.4+dfsg-1) Bayesian MCMC phylogenetic inference www

  • bedops

    Buster:(2.4.35+dfsg-1) high-performance genomic feature operations www

  • bedtools

    Buster:(2.27.1+dfsg-4) Stretch:(2.26.0+dfsg-3) suite of utilities for comparing genomic features www

  • bedtools-test

    Buster:(2.27.1+dfsg-4) Stretch:(2.26.0+dfsg-3) test data for the bedtools package www

  • belvu

    Buster:(4.44.1+dfsg-3) multiple sequence alignment viewer and phylogenetic tool www

  • berkeley-express

    Buster:(1.5.2+dfsg-1+b1) Stretch:(1.5.1-3) Streaming quantification for high-throughput sequencing www

  • bibus

    Buster:(1.5.2+dfsg-1) Stretch:(1.5.2-4) bibliographic database www

  • bio-eagle-examples

    Buster:(2.4.1-1) Stretch:(2.3-3) Examples for bio-eagle www

  • bio-rainbow

    Buster:(2.0.4+dfsg-1) Stretch:(2.0.4-1) clustering and assembling short reads for bioinformatics www

  • biogenesis

    Buster:(0.8-3) Stretch:(0.8-2) artificial life program that simulates evolution of organisms www

  • biomaj

    Buster:(1.2.3-12) Stretch:(1.2.3-11) biological data-bank updater www

  • biomaj-properties

    Buster:(1.2.3-12) Stretch:(1.2.3-11) biological data-bank updater - example properties files www

  • biomaj-watcher

    Buster:(1.2.2-5) Stretch:(1.2.2-4+deb9u1) biological data-bank updater - web interface www

  • bioperl

    Buster:(1.7.2-3) Stretch:(1.7.1-2) Perl tools for computational molecular biology www

  • bioperl-run

    Buster:(1.7.2-4) Stretch:(1.7.1-3) BioPerl wrappers: scripts www

  • biosig-tools

    Buster:(1.9.3-2) Stretch:(1.3.0-2.2) format conversion tools for biomedical data formats www

  • biosquid

    Buster:(1.9g+cvs20050121-11) Stretch:(1.9g+cvs20050121-7) utilities for biological sequence analysis www

  • biosyntax

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (metapackage) www

  • biosyntax-common

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (common files) www

  • biosyntax-example

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (example) www

  • biosyntax-gedit

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (gedit) www

  • biosyntax-less

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (less) www

  • biosyntax-vim

    Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (vim) www

  • bist

    Buster:(0.5.2-1.1+b2) Stretch:(0.5.2-1.1) chemical drawing tool www

  • bitseq

    Buster:(0.7.5+dfsg-4) Bayesian Inference of Transcripts from Sequencing Data www

  • bkchem

    Buster:(0.13.0-6) Stretch:(0.13.0-5) Chemical structures editor www

  • blasr

    Buster:(5.3.2+dfsg-1.1) Stretch:(5.3+0-1) mapping single-molecule sequencing reads www

  • blast2

    Buster:(1:2.8.1-1+deb10u1) Stretch:(1:2.6.0-1) transitional dummy package to ncbi-blast+-legacy www

  • blixem

    Buster:(4.44.1+dfsg-3) interactive browser of sequence alignments www

  • bmt

    Buster & Stretch:(0.6-1) software analysis benchmarking toolkit www

  • bodr

    Buster & Stretch:(10-1) Blue Obelisk Data Repository www

  • boinc-app-eah-brp

    Buster:(0.20170426+dfsg-2+b7) BOINC extension for Einstein at Home binary pulsar search www

  • boinc-app-milkyway

    Buster:(0.18d-4+b7) Stretch:(0.18d-4+b4) Milkyway@home application for the BOINC client www

  • boinc-app-seti

    Buster:(8.00~svn3725-3+rpi1) Stretch:(8.00~svn3363-3+rpi1) SETI@home application for the BOINC client www

  • boinc-app-seti-graphics

    Buster:(8.00~svn3725-3+rpi1) Stretch:(8.00~svn3363-3+rpi1) SETI@home application for the BOINC client (with graphics) www

  • bolt-lmm-example

    Buster:(2.3.2+dfsg-3) Examples for bolt-lmm www

  • boolector

    Buster & Stretch:(1.5.118.6b56be4.121013-1) SMT solver for bit-vectors and arrays www

  • bowtie

    Buster & Stretch:(1.0.0-5) Ultrafast memory-efficient short read aligner www

  • bowtie-examples

    Buster & Stretch:(1.0.0-5) Examples for bowtie, the ultrafast memory-efficient short read aligner www

  • bowtie2-examples

    Buster:(2.3.4.3-1) Stretch:(2.3.0-2) Examples for bowtie2 www

  • boxshade

    Buster:(3.3.1-12) Stretch:(3.3.1-10) Pretty-printing of multiple sequence alignments www

  • bppphyview

    Buster:(0.6.1-1) Stretch:(0.3.0-1.1) Bio++ Phylogenetic Viewer www

  • bppsuite

    Buster:(2.4.1-1) Stretch:(2.2.0-0.1) Bio++ program suite www

  • bppsuite-examples

    Buster:(2.4.1-1) Examples for Bio++ program suite www

  • brig

    Buster:(0.95+dfsg-2) Stretch:(0.95+dfsg-1) BLAST Ring Image Generator www

  • bwa

    Buster & Stretch:(0.6.2-1) Burrows-Wheeler Aligner www
  • Back to top

  • C

  • cafeobj

    Buster:(1.5.9-1) Stretch:(1.5.5-1) new generation algebraic specification and programming language www

  • cafeobj-mode

    Buster:(1.5.9-1) Stretch:(1.5.5-1) Emacs major mode for editing CafeOBJ source code www

  • caffe-tools-cpu

    Buster:(1.0.0+git20180821.99bd997-2+b1) Stretch:(1.0.0~rc4-1) Tools for fast, open framework for Deep Learning (CPU_ONLY) www

  • cain

    Buster:(1.10+dfsg-3) Stretch:(1.10+dfsg-2) simulations of chemical reactions www

  • cain-examples

    Buster:(1.10+dfsg-3) Stretch:(1.10+dfsg-2) examples for cain www

  • cain-solvers

    Buster:(1.10+dfsg-3) Stretch:(1.10+dfsg-2) solvers for cain www

  • calculix-ccx

    Buster & Stretch:(2.11-1) Three-Dimensional Structural Finite Element Program www

  • calculix-cgx

    Buster & Stretch:(2.11+dfsg-1) Calculix cgx is a 3-dimensional pre- and post-processor for fem www

  • casacore-data-igrf

    Buster:(12-1) Stretch:(10-1) International Geomagnetic Reference Field data for casacore www

  • casacore-data-jpl-de200

    Buster:(2007.07.05+ds.1-0+deb10u1) Jet Propulsion Laboratory Development Ephemeris DE200 for casacore www

  • casacore-data-jpl-de405

    Buster:(2007.07.05+ds.1-0+deb10u1) Jet Propulsion Laboratory Development Ephemeris DE405 for casacore www

  • casacore-data-lines

    Buster & Stretch:(0+git2016.11.26-2) Table of spectral line frequencies for casacore www

  • casacore-data-observatories

    Buster:(0+git2018.12.08-1) Stretch:(0+git2016.11.02-1) Table of radio observatory coordinates for casacore www

  • casacore-data-sources

    Buster & Stretch:(2-2) Table of ICRF reference source coordinates for casacore www

  • casacore-data-tai-utc

    Buster:(1.2) Stretch:(1.1) Difference table between TAI and UTC for casacore

  • casacore-tools

    Buster:(3.0.0-4) Stretch:(2.2.0-2) Tools built with CASA www

  • cassbeam

    Buster & Stretch:(1.1-1) Cassegrain antenna modelling www

  • cassiopee

    Buster:(1.0.9-2) Stretch:(1.0.5-1) index and search tool in genomic sequences www

  • cba

    Buster & Stretch:(0.3.6-4.1+b1) Continuous Beam Analysis www

  • cbflib-bin

    Buster:(0.9.5.18+dfsg1-1+b1) Stretch:(0.9.2.2-1) utilities to manipulate CBF files www

  • cbmc

    Buster:(5.10-5) Stretch:(5.6-1) bounded model checker for C and C++ programs www

  • cclib

    Buster:(1.6-1) Stretch:(1.3.1-1) Parsers and algorithms for computational chemistry www

  • cclib-data

    Buster & Stretch:(1.1-1) Parsers and algorithms for computational chemistry (data files) www

  • cct

    Buster:(20170919+dfsg-1) visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences www

  • cct-examples

    Buster:(20170919+dfsg-1) example data for testing the package cct www

  • cd-hit

    Buster:(4.6.8-2) Stretch:(4.6.6-2) suite of programs designed to quickly group sequences www

  • cdbfasta

    Buster:(0.99-20100722-5) Stretch:(0.99-20100722-3) Constant DataBase indexing and retrieval tools for multi-FASTA files www

  • celestia-common-nonfree

    Buster & Stretch:(1.6.1-1) Non-free datafiles for Celestia, a real-time visual space simulation www

  • cernlib

    Buster:(20061220+dfsg3-4.4) Stretch:(20061220+dfsg3-4.3+deb9u2) CERNLIB data analysis suite - general use metapackage www

  • cernlib-core

    Buster:(20061220+dfsg3-4.4) Stretch:(20061220+dfsg3-4.3+deb9u2) CERNLIB data analysis suite - main libraries and programs www

  • cernlib-extras

    Buster:(20061220+dfsg3-4.4) Stretch:(20061220+dfsg3-4.3+deb9u2) CERNLIB data analysis suite - extra programs www

  • cernlib-montecarlo

    Buster & Stretch:(20061220+dfsg3-3.1) CERNLIB Monte Carlo libraries www

  • cg3

    Buster:(1.1.7-1+b1) Stretch:(0.9.9~r11624-1+b1) Tools for using the 3rd edition of Constraint Grammar (CG-3) www

  • cgns-convert

    Buster:(3.3.0-7~deb10u1) Stretch:(3.3.0-4) CFD General Notation System - Conversion tools www

  • cgview

    Buster:(0.0.20100111-4) Stretch:(0.0.20100111-2) Circular Genome Viewer www

  • ch5m3d

    Buster:(1.2.5+dfsg-2) Stretch:(1.2.5+dfsg-1) create and visualize 3-dimensional drawings of simple molecules www

  • changeo

    Buster:(0.4.5-1) Repertoire clonal assignment toolkit (Python 3) www

  • checkit-tiff

    Buster:(0.2.3-2) conformance checker for baseline TIFFs www

  • chemical-structures

    Buster:(2.2.dfsg.0-13) Stretch:(2.2.dfsg.0-12) set of molecular structures in open formats

  • chemps2

    Buster:(1.8.9-1+b1) Stretch:(1.8.3-2) Executable to call libchemps2-3 from the command line www

  • chemtool

    Buster:(1.6.14-3+b4) Stretch:(1.6.14-1) chemical structures drawing program www

  • chimeraslayer

    Buster:(20101212+dfsg1-2) Stretch:(20101212+dfsg1-1) detects likely chimeras in PCR amplified DNA www

  • choreonoid

    Buster & Stretch:(1.1.0+dfsg-6.2+b1) Integrated robotics GUI environment www

  • choreonoid-data

    Buster & Stretch:(1.1.0+dfsg-6.2) Integrated robotics GUI environment - shared data www

  • choreonoid-plugins-base

    Buster & Stretch:(1.1.0+dfsg-6.2+b1) Integrated robotics GUI environment - core plug-ins www

  • chromhmm

    Buster:(1.18+dfsg-1) Chromatin state discovery and characterization www

  • chromimpute

    Buster:(1.0.3+dfsg-1) Large-scale systematic epigenome imputation www

  • circos

    Buster:(0.69.6+dfsg-2) Stretch:(0.69.4+dfsg-1) plotter for visualizing data www

  • circos-tools

    Buster:(0.23-1) Stretch:(0.22-1) plotter for visualizing data - helper utilities www

  • ckon

    Buster:(0.7.1-3+b4) Stretch:(0.7.1-3+b2) automatic build tool for ROOT data analysis software www

  • clearcut

    Buster:(1.0.9-3) Stretch:(1.0.9-1) extremely efficient phylogenetic tree reconstruction www

  • clinica

    Buster & Stretch:(0.3.0-1) Simple medical records manager www

  • clinica-common

    Buster & Stretch:(0.3.0-1) Simple medical records manager (architecture independent files) www

  • clinica-dev

    Buster & Stretch:(0.3.0-1) Simple medical records manager (development files) www

  • clinica-plugins

    Buster & Stretch:(0.3.0-1) Simple medical records manager (plugins) www

  • clonalframe

    Buster:(1.2-9) Stretch:(1.2-5) inference of bacterial microevolution using multilocus sequence data www

  • clonalframeml

    Buster:(1.11-3) Efficient Inference of Recombination in Whole Bacterial Genomes www

  • clonalorigin

    Buster:(1.0-3) inference of homologous recombination in bacteria using whole genome sequences www

  • clustalo

    Buster:(1.2.4-2) Stretch:(1.2.4-1) General purpose multiple sequence alignment program for proteins www

  • clustalw

    Buster:(2.1+lgpl-6) Stretch:(2.1+lgpl-5) global multiple nucleotide or peptide sequence alignment www

  • clustalx

    Buster:(2.1+lgpl-8) Stretch:(2.1+lgpl-5) Multiple alignment of nucleic acid and protein sequences (graphical interface) www

  • cmor-tables

    Buster:(3.3-1) Stretch:(3.2-1) MIP tables for the Climate Model Output Rewriter library www

  • cmtk

    Buster:(3.3.1p1+dfsg-1) Stretch:(3.3.1-1.1) Computational Morphometry Toolkit www

  • cod-tools

    Buster:(2.3+dfsg-3) tools for manipulating CIF format files www

  • code-aster-gui

    Buster:(1.13.1-2.1) Stretch:(1.13.1-2) Graphical user interface for Code_Aster - client www

  • code-aster-run

    Buster:(1.13.1-2.1) Stretch:(1.13.1-2) Graphical user interface for Code_Aster - server www

  • code-saturne

    Buster:(5.3.2+repack-1) Stretch:(4.3.3+repack-1) General purpose Computational Fluid Dynamics (CFD) software www

  • code-saturne-bin

    Buster:(5.3.2+repack-1) Stretch:(4.3.3+repack-1) General purpose Computational Fluid Dynamics (CFD) software - binaries www

  • code-saturne-data

    Buster:(5.3.2+repack-1) Stretch:(4.3.3+repack-1) General purpose Computational Fluid Dynamics (CFD) software - data www

  • code-saturne-doc

    Buster:(5.3.2+repack-1) Stretch:(4.3.3+repack-1) General purpose Computational Fluid Dynamics (CFD) software - Documentation www

  • code-saturne-include

    Buster:(5.3.2+repack-1) Stretch:(4.3.3+repack-1) General purpose Computational Fluid Dynamics (CFD) software - includes www

  • codonw

    Buster:(1.4.4-4) Stretch:(1.4.4-3) Correspondence Analysis of Codon Usage www

  • coinor-cbc

    Buster:(2.9.9+repack1-1) Stretch:(2.8.12-1+b1) Coin-or branch-and-cut mixed integer programming solver www

  • coinor-clp

    Buster:(1.16.11+repack1-1) Stretch:(1.15.10-3) Coin-or linear programming solver www

  • coinor-csdp

    Buster & Stretch:(6.1.1-1+b1) A software package for semidefinite programming www

  • coinor-libcbc3

    Buster:(2.9.9+repack1-1) Stretch:(2.8.12-1+b1) Coin-or branch-and-cut mixed integer programming solver (shared libraries) www

  • coinor-libcgl1

    Buster:(0.59.10+repack1-1) Stretch:(0.58.9-1+b1) COIN-OR Cut Generation Library www

  • coinor-libclp1

    Buster:(1.16.11+repack1-1) Stretch:(1.15.10-3) Coin-or linear programming solver (shared libraries) www

  • coinor-libcoinutils3v5

    Buster:(2.10.14+repack1-1) Stretch:(2.9.15-4) Coin-or collection of utility classes (binaries and libraries) www

  • coinor-libdylp0

    Buster & Stretch:(1.6.0-1.1) Linear programming solver using the dynamic simplex algorithm www

  • coinor-libflopc++0

    Buster & Stretch:(1.0.6-3.1+b2) Formulation of Linear Optimization Problems in C++ www

  • coinor-libosi1v5

    Buster:(0.107.9+repack1-1) Stretch:(0.106.9-2) COIN-OR Open Solver Interface www

  • coinor-libsymphony3

    Buster:(5.6.16+repack1-1.1) Stretch:(5.6.1-1+b1) COIN-OR solver for mixed-integer linear programs (shared libraries) www

  • coinor-libvol0

    Buster & Stretch:(1.1.7-1) Coin-or linear programming solver www

  • coinor-symphony

    Buster:(5.6.16+repack1-1.1) Stretch:(5.6.1-1+b1) COIN-OR solver for mixed-integer linear programs www

  • comet-ms

    Buster:(2018012-1) Stretch:(2014022-3+b2) Tandem mass spectrometry (MS/MS) search engine www

  • concavity

    Buster:(0.1+dfsg.1-4) Stretch:(0.1+dfsg.1-1) predictor of protein ligand binding sites from structure and conservation www

  • connectome-workbench

    Buster:(1.3.2-1) Stretch:(1.2.3+git3-g7b83782-1) brain visualization, analysis and discovery tool www

  • conservation-code

    Buster:(20110309.0-7) Stretch:(20110309.0-5) protein sequence conservation scoring tool www

  • cp2k

    Buster:(6.1-2) Stretch:(4.1-1) Ab Initio Molecular Dynamics www

  • cp2k-data

    Buster:(6.1-2) Stretch:(4.1-1) Ab Initio Molecular Dynamics (data files) www

  • cpl-plugin-amber

    Buster:(4.3.8+dfsg-1+b1) Stretch:(4.3.4+dfsg-1+b1) ESO data reduction pipeline for the AMBER instrument www

  • cpl-plugin-amber-calib

    Buster:(4.3.8+dfsg-1) Stretch:(4.3.4+dfsg-1) ESO data reduction pipeline calibration data downloader for AMBER www

  • cpl-plugin-fors

    Buster:(5.3.32+dfsg-1) Stretch:(5.3.11+dfsg-1) ESO data reduction pipeline for the FORS1/2 instruments www

  • cpl-plugin-fors-calib

    Buster:(5.3.32+dfsg-1) Stretch:(5.3.11+dfsg-1) ESO data reduction pipeline calibration data downloader for FORS2 www

  • cpl-plugin-giraf

    Buster:(2.16.3+dfsg-1+b1) Stretch:(2.15+dfsg-1+b1) ESO data reduction pipeline for the GIRAFFE instrument www

  • cpl-plugin-giraf-calib

    Buster:(2.16.3+dfsg-1) Stretch:(2.15+dfsg-1) ESO data reduction pipeline calibration data downloader for GIRAFFE www

  • cpl-plugin-hawki

    Buster:(2.4.3+dfsg-1) Stretch:(1.8.21+dfsg-1) ESO data reduction pipeline for the HAWK-I instrument www

  • cpl-plugin-hawki-calib

    Buster:(2.4.3+dfsg-1) Stretch:(1.8.21+dfsg-1) ESO data reduction pipeline calibration data downloader for HAWK-I www

  • cpl-plugin-kmos

    Buster:(2.1.0+dfsg-1) Stretch:(1.4.0+dfsg-1) ESO data reduction pipeline for the KMOS instrument www

  • cpl-plugin-kmos-calib

    Buster:(2.1.0+dfsg-1) Stretch:(1.4.0+dfsg-1) ESO data reduction pipeline calibration data downloader for KMOS www

  • cpl-plugin-muse

    Buster:(2.6+dfsg-1) Stretch:(1.6.2+dfsg-1) ESO data reduction pipeline for the MUSE instrument www

  • cpl-plugin-muse-calib

    Buster:(2.6+dfsg-1) Stretch:(1.6.2+dfsg-1) ESO data reduction pipeline calibration data downloader for MUSE www

  • cpl-plugin-naco

    Buster:(4.4.6+dfsg-1) Stretch:(4.4.1+dfsg-3) ESO data reduction pipeline for the NaCo instrument www

  • cpl-plugin-naco-calib

    Buster:(4.4.6+dfsg-1) Stretch:(4.4.1+dfsg-3) ESO data reduction pipeline NaCo calibration data downloader www

  • cpl-plugin-uves

    Buster:(5.9.1+dfsg-1+b1) Stretch:(5.7.0+dfsg-1+b1) ESO data reduction pipeline for the UVES instrument www

  • cpl-plugin-uves-calib

    Buster:(5.9.1+dfsg-1) Stretch:(5.7.0+dfsg-1) ESO data reduction pipeline calibration data downloader for UVES www

  • cpl-plugin-vimos

    Buster:(3.2.3+dfsg-2+b1) Stretch:(3.1.7+dfsg-1+b1) ESO data reduction pipeline for the VIMOS instrument www

  • cpl-plugin-vimos-calib

    Buster:(3.2.3+dfsg-2) Stretch:(3.1.7+dfsg-1) ESO data reduction pipeline calibration data downloader for VIMOS www

  • cpl-plugin-visir

    Buster:(4.3.7+dfsg-1+b1) Stretch:(4.3.0+dfsg1-1+b1) ESO data reduction pipeline for the VISIR instrument www

  • cpl-plugin-visir-calib

    Buster:(4.3.7+dfsg-1) Stretch:(4.3.0+dfsg1-1) ESO data reduction pipeline calibration data downloader for VISIR www

  • cpl-plugin-xshoo

    Buster:(3.2.0+dfsg-1+b1) Stretch:(2.8.4+dfsg-3) ESO data reduction pipeline for the XSHOOTER instrument www

  • cpl-plugin-xshoo-calib

    Buster:(3.2.0+dfsg-1) Stretch:(2.8.4+dfsg-3) ESO data reduction pipeline calibration data downloader for XSHOOTER www

  • cpuinfo

    Buster:(0.0~git20190201.d5e37ad-1) CPU INFOrmation library (binary utilities) www

  • critterding

    Buster & Stretch:(1.0-beta12.1-1.3) Evolving Artificial Life www

  • ctdconverter

    Buster:(2.0-4) Convert CTD files into Galaxy tool and CWL CommandLineTool files www

  • ctsim

    Buster:(6.0.2-2) Stretch:(5.2.0-4) Computed tomography simulator www

  • ctsim-help

    Buster:(6.0.2-2) Stretch:(5.2.0-4) Online help file for CTSim www

  • cutadapt

    Buster:(1.18-1) Stretch:(1.12-2) Clean biological sequences from high-throughput sequencing reads www

  • cwltool

    Buster:(1.0.20181217162649+dfsg-10) Stretch:(1.0.20170114120503-1) Common Workflow Language reference implementation www
  • Back to top

  • D

  • daligner

    Buster:(1.0+git20180524.fd21879-1) Stretch:(1.0+20161119-1) local alignment discovery between long nucleotide sequencing reads www

  • dans-gdal-scripts

    Buster:(0.24-3+b1) Stretch:(0.24-1+b1) GDAL contributed tools by Geographic Information Network of Alaska www

  • darknet

    Buster:(0.0.0+git20180914.61c9d02e-1) Open Source Neural Networks in C www

  • dascrubber

    Buster:(1.1-1) Stretch:(0~20160601-2) alignment-based scrubbing pipeline for DNA sequencing reads www

  • datalad

    Buster:(0.11.2-2) Stretch:(0.4.1-1) data files management and distribution platform www

  • datalad-container

    Buster:(0.2.2-2) DataLad extension for working with containerized environments www

  • dawg

    Buster:(1.2-2) Stretch:(1.2-1) simulate the evolution of recombinant DNA sequences www

  • dazzdb

    Buster:(1.0+git20180908.0bd5e07-1) Stretch:(1.0+20161112-2) manage nucleotide sequencing read data www

  • dcl-f77

    Buster:(7.3.3-1) GFD-DENNOU Club Library (DCL) - FORTRAN77 version www

  • dcm2niix

    Buster:(1.0.20181125-1) Stretch:(1.0.20161101-1) next generation DICOM to NIfTI converter www

  • dcmtk

    Buster:(3.6.4-2.1) Stretch:(3.6.1~20160216-4) OFFIS DICOM toolkit command line utilities www

  • debian-astro-logo

    Buster:(2.0) Stretch:(1.0) Debian Astronomy Pure Blends Logo www

  • deepnano-data

    Buster:(0.0+git20170813.e8a621e-3) alternative basecaller for MinION reads of genomic sequences (data) www

  • delly

    Buster:(0.8.1-2) Structural variant discovery by read analysis www

  • dh-r

    Buster:(20190121) Stretch:(20161219) Debian helper tools for packaging R libraries

  • dialign

    Buster:(2.2.1-10) Stretch:(2.2.1-8) Segment-based multiple sequence alignment www

  • dialign-tx

    Buster:(1.0.2-12) Stretch:(1.0.2-9) Segment-based multiple sequence alignment www

  • dialign-tx-data

    Buster:(1.0.2-12) Stretch:(1.0.2-9) Segment-based multiple sequence alignment (data files) www

  • diamond-aligner

    Buster:(0.9.22+dfsg-2) accelerated BLAST compatible local sequence aligner www

  • dicomnifti

    Buster:(2.33.1-1) Stretch:(2.32.1-1) converts DICOM files into the NIfTI format www

  • dicompyler

    Buster:(0.4.2.0-2) Stretch:(0.4.2-3) radiation therapy research platform www

  • dimbl

    Buster:(0.15-2.1) Stretch:(0.15-1) Distributed Memory Based Learner www

  • dindel

    Buster:(1.01-wu1-3+dfsg-1) Stretch:(1.01+dfsg-4) determines indel calls from short-read data www

  • discosnp

    Buster:(1.2.6-2) Stretch:(1.2.6-1) discovering Single Nucleotide Polymorphism from raw set(s) of reads www

  • disulfinder

    Buster:(1.2.11-8) Stretch:(1.2.11-6) cysteines disulfide bonding state and connectivity predictor www

  • disulfinder-data

    Buster:(1.2.11-8) Stretch:(1.2.11-6) data files for predictor of disulfide bonds in proteins www

  • dlmodelbox

    Buster:(0.1.3-1) Swiss Army Knife of Deep Learning Models www

  • dnaclust

    Buster:(3-6) Stretch:(3-4) tool for clustering millions of short DNA sequences www

  • dotter

    Buster:(4.44.1+dfsg-3) detailed comparison of two genomic sequences www

  • dotur

    Buster & Stretch:(1.53-2) distance based OTU and richness estimation www

  • dozzaqueux

    Buster:(3.51-2) Stretch:(3.50-1) simulator for chemical mixtures www

  • dozzaqueux-data

    Buster:(3.51-2) Stretch:(3.50-1) databases for chemical mixtures www

  • dpuser

    Buster:(3.3+p1+dfsg-2+b1) Stretch:(3.3+p1+dfsg-2) Interactive language for handling numbers, strings, and matrices www

  • drawxtl

    Buster:(5.5-3+b2) Stretch:(5.5-3+b1) crystal structure viewer www

  • drslib

    Buster:(0.3.1.p3-1) Stretch:(0.3.0a3-5) Command-line tools for the Data Reference Syntax library www

  • dsdp

    Buster & Stretch:(5.8-9.4) Software for Semidefinite Programming www

  • dssp

    Buster:(3.0.0-3) Stretch:(2.2.1-3) protein secondary structure assignment based on 3D structure www

  • dwgsim

    Buster:(0.1.12-2) Stretch:(0.1.11-3) short sequencing read simulator www

  • dx

    Buster:(1:4.4.4-12) Stretch:(1:4.4.4-9+b1) OpenDX (IBM Visualization Data Explorer) - main package www

  • dxf2gcode

    Buster:(20170925-4) prepares drawings of parts for automatic machine tools www

  • dxsamples

    Buster:(4.4.0-4) Stretch:(4.4.0-3) Sample programs for the OpenDX Data Explorer www
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  • E

  • e-mem

    Buster:(1.0.1-2) Efficient computation of Maximal Exact Matches for very large genomes www

  • e00compr

    Buster:(1.0.1-5) Stretch:(1.0.1-3) Program to read/write Arcinfo compressed E00 files www

  • ea-utils

    Buster:(1.1.2+dfsg-5) Stretch:(1.1.2+dfsg-4+b2) command-line tools for processing biological sequencing data www

  • easychem

    Buster & Stretch:(0.6-8) Draw high-quality molecules and 2D chemical formulas www

  • ecaccess

    Buster & Stretch:(4.0.1-1) clients to access ECMWF facilities www

  • ecflow-client

    Buster:(4.12.0-1) Client tools for Meteorological workflow www

  • ecflow-server

    Buster:(4.12.0-1) Meteorological workflow controller - server www

  • ecopcr

    Buster:(1.0.1+dfsg-1) Stretch:(0.5.0+dfsg-1) estimate PCR barcode primers quality www

  • edfbrowser

    Buster:(1.67+dfsg-1) Stretch:(1.58-1) viewer for biosignal storage files such as bdf and edf www

  • edlib-aligner

    Buster:(1.2.4-1) edlib sequence alignment tool using edit distance www

  • edtsurf

    Buster:(0.2009-6) Stretch:(0.2009-4) triangulated mesh surfaces for protein structures www

  • eigensoft

    Buster:(7.2.1+dfsg-1+b1) Stretch:(6.1.4+dfsg-1) reduction of population bias for genetic analyses www

  • elk-lapw

    Buster:(5.4.24-2) Stretch:(4.0.15-2) All-Electron Density-Functional Electronic Structure Code www

  • elki

    Buster:(0.7.1-10.1) Stretch:(0.7.1-3) Data mining algorithm development framework www

  • elki-dev

    Buster:(0.7.1-10.1) Stretch:(0.7.1-3) Data mining algorithm development framework - development files www

  • elph

    Buster:(1.0.1-2) DNA/protein sequence motif finder www

  • embassy-domainatrix

    Buster:(0.1.660-3) Stretch:(0.1.660-1) Extra EMBOSS commands to handle domain classification file www

  • embassy-domalign

    Buster:(0.1.660-3) Stretch:(0.1.660-1) Extra EMBOSS commands for protein domain alignment www

  • embassy-domsearch

    Buster:(1:0.1.660-3) Stretch:(1:0.1.660-1) Extra EMBOSS commands to search for protein domains www

  • emboss

    Buster:(6.6.0+dfsg-7+b1) Stretch:(6.6.0+dfsg-6) European molecular biology open software suite www

  • emboss-data

    Buster:(6.6.0+dfsg-7) Stretch:(6.6.0+dfsg-6) data files for the EMBOSS package www

  • emboss-explorer

    Buster:(2.2.0-10) Stretch:(2.2.0-8) web-based GUI to EMBOSS www

  • emboss-lib

    Buster:(6.6.0+dfsg-7+b1) Stretch:(6.6.0+dfsg-6) EMBOSS Libraries www

  • engauge-digitizer

    Buster:(10.10+ds.1-1) Stretch:(9.7+ds.1-1) interactively extracts numbers from bitmap graphs or maps www

  • ent

    Buster:(1.2debian-2) Stretch:(1.2debian-1) pseudorandom number sequence test program www

  • epigrass

    Buster:(2.4.7-2+b31) Stretch:(2.4.7-1+b2) scientific tool for simulations and scenario analysis in network epidemiology www

  • epsilon-bin

    Buster:(0.9.2+dfsg-4) Stretch:(0.9.2+dfsg-2) Library for wavelet image compression - tools www

  • ergo

    Buster & Stretch:(3.5-1) Quantum chemistry program for large-scale calculations www

  • eso-midas

    Buster:(19.02pl1.0-1) Stretch:(15.09pl1.0-2) European Southern Observatory Munich Image Data Analysis System www

  • eso-midas-testdata

    Buster:(19.02pl1.0-1) Test data files for ESO-MIDAS www

  • eso-pipelines

    Buster & Stretch:(1.2) ESO VLT Instrument pipeline collection

  • esorex

    Buster:(3.13.1-1) Stretch:(3.12.3-1) Execution Tool for European Southern Observatory pipelines www

  • estscan

    Buster:(3.0.3-3) ORF-independent detector of coding DNA sequences www

  • esys-particle

    Buster:(2.3.5+dfsg1-2.1) Stretch:(2.3.4+dfsg1-4) Software for particle-based numerical modelling. MPI version. www

  • etsf-io

    Buster:(1.0.4-4) Stretch:(1.0.4-1.1) Binary tools to check, merge and read ETSF files www

  • exonerate

    Buster:(2.4.0-4) Stretch:(2.4.0-2) generic tool for pairwise sequence comparison www

  • expeyes

    Buster:(4.4.4+dfsg-4) Stretch:(4.2.1+dfsg-1) hardware & software framework for developing science experiments www

  • expeyes-clib

    Buster:(4.4.4+dfsg-4) Stretch:(4.2.1+dfsg-1) hardware & software framework for developing science experiments www

  • eye

    Buster:(19.0221.2026~ds-1) semantic web reasoning engine www

  • eyes17

    Buster:(4.4.4+dfsg-4) hardware & software framework for developing science experiments www
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  • F

  • fact++

    Buster:(1.6.5~dfsg-2) Stretch:(1.6.5~dfsg-1) description logic reasoner for the semantic web www

  • falconkit

    Buster & Stretch:(0.7-1) genome assembly toolkit www

  • fast5

    Buster:(0.6.5-2) utilities for manipulating Oxford Nanopore Fast5 files www

  • fasta3-doc

    Buster:(36.3.8g-1) user guide for FASTA tools www

  • fastahack

    Buster:(0.0+git20160702.bbc645f+dfsg-6) Stretch:(0.0+20160702-1) utility for indexing and sequence extraction from FASTA files www

  • fastaq

    Buster:(3.17.0-2) Stretch:(3.14.0-1) FASTA and FASTQ file manipulation tools www

  • fastdnaml

    Buster:(1.2.2-14) Stretch:(1.2.2-11) Tool for construction of phylogenetic trees of DNA sequences www

  • fastlink

    Buster:(4.1P-fix100+dfsg-2) Stretch:(4.1P-fix100+dfsg-1) faster version of pedigree programs of Linkage www

  • fastml

    Buster:(3.1-4) Stretch:(3.1-3) maximum likelihood ancestral amino-acid sequence reconstruction www

  • fastp

    Buster:(0.19.6+dfsg-1) Ultra-fast all-in-one FASTQ preprocessor www

  • fastqc

    Buster:(0.11.8+dfsg-2) Stretch:(0.11.5+dfsg-6) quality control for high throughput sequence data www

  • fastqtl

    Buster:(2.184+dfsg-6) Stretch:(2.184+dfsg-5) Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes www

  • fasttree

    Buster:(2.1.10-2) Stretch:(2.1.9-1) phylogenetic trees from alignments of nucleotide or protein sequences www

  • fastx-toolkit

    Buster:(0.0.14-6) Stretch:(0.0.14-3) FASTQ/A short nucleotide reads pre-processing tools www

  • fcc

    Buster & Stretch:(2.8-1) Script to compile C/C++ programs and link to Fortran libraries www

  • feedgnuplot

    Buster:(1.51-1) Stretch:(1.40-1) Pipe-oriented frontend to Gnuplot www

  • ffindex

    Buster:(0.9.9.9-2) Stretch:(0.9.9.7-3) simple index/database for huge amounts of small files www

  • figtree

    Buster:(1.4.4-3) Stretch:(1.4.2+dfsg-2) graphical phylogenetic tree viewer www

  • filo

    Buster & Stretch:(1.1.0-3) FILe and stream Operations www

  • fiona

    Buster:(1.8.4-1+b1) Stretch:(1.7.1-1) Command line tool for reading/writing vector geospatial data www

  • fitgcp

    Buster:(0.0.20150429-2) Stretch:(0.0.20150429-1) fitting genome coverage distributions with mixture models www

  • fitscut

    Buster:(1.4.4-4+b3) Stretch:(1.4.4-4+b2) Extract cutouts from FITS image format files www

  • fitsh

    Buster & Stretch:(0.9.2-1) Software package for astronomical image processing www

  • fitspng

    Buster:(1.4-1) Stretch:(0.3.5-1+b1) FITS to PNG converter www

  • fitsverify

    Buster:(4.19-1+b1) Stretch:(4.18-1+b1) FITS File Format-Verification Tool www

  • fityk

    Buster:(1.3.1-3) Stretch:(1.3.0-1) general-purpose nonlinear curve fitting and data analysis www

  • flexbar

    Buster:(1:3.4.0-2) Stretch:(2.50-2) flexible barcode and adapter removal for sequencing platforms www

  • flexpart

    Buster:(9.02-21) Stretch:(9.02-15) Particle Dispersion model for tracing air transport phenomena www

  • flextra

    Buster:(5.0-12) Stretch:(5.0-6) Trajectory model for tracing air transport phenomena www

  • foma-bin

    Buster:(0.9.18+r243-1+b1) Stretch:(0.9.18+r243-1) Xerox-compatible finite-state compiler - library www

  • form

    Buster:(4.2.1-1) Symbolic manipulation system www

  • fractalnow

    Buster:(0.8.2-2) Stretch:(0.8.1-1.1) Fast, advanced fractal generator www

  • free42-nologo

    Buster & Stretch:(1.4.77-1.2) Free42 is a re-implementation of the HP-42S calculator www

  • freecad

    Buster:(0.18~pre1+dfsg1-5+rpi1) Stretch:(0.16+dfsg2-3) Extensible Open Source CAx program www

  • freecad-common

    Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - common files www

  • freecad-python2

    Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - Python 2 binaries www

  • freecad-python3

    Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - Python 3 binaries www

  • freecad-runtime

    Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - runtime files www

  • freecontact

    Buster:(1.0.21-7) Stretch:(1.0.21-5) fast protein contact predictor www

  • freediams

    Buster:(0.9.4-2+b3) Stretch:(0.9.4-1) pharmaceutical drug prescription and interaction manager www

  • freemedforms-common-resources

    Buster:(0.9.4-2) Stretch:(0.9.4-1) common data for the FreeMedForms project applications www

  • freemedforms-emr

    Buster:(0.9.4-2+b3) Stretch:(0.9.4-1) electronic medical record manager www

  • freemedforms-emr-resources

    Buster:(0.9.4-2) Stretch:(0.9.4-1) data for the FreeMedForms EMR www

  • freemedforms-freedata

    Buster:(0.9.4-2) Stretch:(0.9.4-1) free extra-data for the FreeMedForms project www

  • freemedforms-libs

    Buster:(0.9.4-2+b3) Stretch:(0.9.4-1) common libs for the FreeMedForms project www

  • freemedforms-project

    Buster:(0.9.4-2) Stretch:(0.9.4-1) set of medical applications for health professionals www

  • freemedforms-theme

    Buster:(0.9.4-2) Stretch:(0.9.4-1) theme for the FreeMedForms project www

  • frog

    Buster:(0.15-1) Stretch:(0.13.7-1) tagger and parser for natural languages (runtime) www

  • frogdata

    Buster:(0.16-1) Stretch:(0.13-1) Data files for Frog www

  • fsa

    Buster:(1.15.9+dfsg-4) Stretch:(1.15.9+dfsg-3) Fast Statistical Alignment of protein, RNA or DNA sequences www

  • fsl

    Buster:(5.0.8-6) Stretch:(5.0.7-4) transitional dummy package www

  • fsl-core

    Buster:(5.0.8-6) Stretch:(5.0.7-4) metapackage for the latest version of FSL www

  • ftools-fv

    Buster:(5.5+dfsg-2) Stretch:(5.4+dfsg-2) Tool for viewing and editing FITS format files www

  • ftools-pow

    Buster:(5.5+dfsg-2) Stretch:(5.4+dfsg-2+b1) Curve plotting and image display interface tool www

  • funtools

    Buster:(1.4.7-4) Stretch:(1.4.7-1) Minimal buy-in FITS utility package www

  • fxt-tools

    Buster:(0.3.8-2) Stretch:(0.3.2-2) Multithreaded tracing library www
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  • G

  • g3data

    Buster & Stretch:(1:1.5.3-2.1) extract data from scanned graphs www

  • gabedit

    Buster:(2.4.8-3+b1) Stretch:(2.4.8-3) graphical user interface to Ab Initio packages www

  • galileo

    Buster:(0.5.1-6) Stretch:(0.5.1-4) Utility to securely synchronize a Fitbit device with the Fitbit web service www

  • galileo-daemon

    Buster:(0.5.1-6) Stretch:(0.5.1-4) Utility to securely synchronize a Fitbit device - daemon www

  • gamgi

    Buster:(0.17.3-2) Stretch:(0.17.1-1) General Atomistic Modelling Graphic Interface (GAMGI) www

  • gamgi-data

    Buster:(0.17.3-2) Stretch:(0.17.1-1) General Atomistic Modelling Graphic Interface (data) www

  • garli

    Buster:(2.1-3) Stretch:(2.1-1) phylogenetic analysis of molecular sequence data using maximum-likelihood www

  • garli-examples

    Buster:(2.1-3) Stretch:(2.1-1) phylogenetic analysis of molecular sequence data (examples) www

  • garli-mpi

    Buster:(2.1-3) phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI) www

  • garlic

    Buster:(1.6-3) Stretch:(1.6-1.1) visualization program for biomolecules www

  • gatb-core-testdata

    Buster:(1.4.1+git20181225.44d5a44+dfsg-3) Genome Analysis Toolbox with de-Bruijn graph (test data) www

  • gausssum

    Buster:(3.0.2-1) Stretch:(3.0.1.1-1) parse and display Gaussian, GAMESS, and etc's output www

  • gazebo9-common

    Buster:(9.6.0-1) Open Source Robotics Simulator - Shared files www

  • gbrowse

    Buster:(2.56+dfsg-4) Stretch:(2.56+dfsg-2) GMOD Generic Genome Browser www

  • gbrowse-calign

    Buster:(2.56+dfsg-4+b1) Stretch:(2.56+dfsg-2) CAlign helper www

  • gbrowse-data

    Buster:(2.56+dfsg-4) Stretch:(2.56+dfsg-2) Sample data to use GBrowse www

  • gbutils

    Buster:(5.7.1-1) Stretch:(5.6.8-1) utilities for command line econometrics www

  • gchempaint

    Buster:(0.14.17-1.1) Stretch:(0.14.15-1+deb9u1) 2D chemical structures editor for the GNOME2 desktop www

  • gcrystal

    Buster:(0.14.17-1.1) Stretch:(0.14.15-1+deb9u1) lightweight crystal structures visualizer www

  • gcu-bin

    Buster:(0.14.17-1.1) Stretch:(0.14.15-1+deb9u1) GNOME chemistry utils (helper applications) www

  • gcx

    Buster & Stretch:(1.3-1.1) astronomical image processing and photometry gtk+ application www

  • gdal-bin

    Buster:(2.4.0+dfsg-1+b2) Stretch:(2.1.2+dfsg-5) Geospatial Data Abstraction Library - Utility programs www

  • gdal-data

    Buster:(2.4.0+dfsg-1) Geospatial Data Abstraction Library - Data files www

  • gdis

    Buster & Stretch:(0.90-5) molecular and crystal model viewer www

  • gdis-data

    Buster & Stretch:(0.90-5) molecular and crystal model viewer (data files) www

  • gdl-astrolib

    Buster:(2018.08.10+dfsg-1) Stretch:(2016.11.10+dfsg-1) Low-level astronomy software for GDL www

  • gdl-coyote

    Buster:(2019.01.29-1) Stretch:(2016.11.13-1) GDL library from D. Fannings IDL courses www

  • gdl-mpfit

    Buster:(1.85+2017.01.03-3) Stretch:(1.84+2016.05.19-1) Robust non-linear least squares curve fitting for GDL www

  • gdpc

    Buster:(2.2.5-9) Stretch:(2.2.5-6) visualiser of molecular dynamic simulations www

  • gdpc-examples

    Buster:(2.2.5-9) Stretch:(2.2.5-6) example files for the gdpc program www

  • geant321

    Buster & Stretch:(1:3.21.14.dfsg-11) [Physics] Particle detector description and simulation tool www

  • geant321-data

    Buster & Stretch:(1:3.21.14.dfsg-11) [Physics] Data for GEANT 3.21 detector simulator www

  • gelemental

    Buster:(1.2.0-12) Stretch:(1.2.0-10) Periodic Table viewer www

  • gemma

    Buster:(0.98.1+dfsg-1) Genome-wide Efficient Mixed Model Association www

  • gemma-doc

    Buster:(0.98.1+dfsg-1) Example folder for GEMMA www

  • genometester

    Buster:(4.0+git20180508.a9c14a6+dfsg-1) toolkit for performing set operations on k-mer lists www

  • genometools

    Buster:(1.5.10+ds-3) Stretch:(1.5.9+ds-4) versatile genome analysis toolkit www

  • genometools-common

    Buster:(1.5.10+ds-3) Stretch:(1.5.9+ds-4) shared data files for GenomeTools www

  • gentle

    Buster:(1.9+cvs20100605+dfsg1-7+b1) Stretch:(1.9+cvs20100605+dfsg1-5) suite to plan genetic cloning www

  • geographiclib-tools

    Buster:(1.49-4) Stretch:(1.46-2+b2) C++ library to solve some geodesic problems -- tools www

  • geotiff-bin

    Buster:(1.4.3-1) Stretch:(1.4.2-2+b1) GeoTIFF (geografic enabled TIFF) library -- tools www

  • gerris

    Buster:(20131206+dfsg-18+b27) Stretch:(20131206+dfsg-17) Fluid Flow Solver www

  • getdata

    Buster:(0.2-3) Stretch:(0.2-1) management of external databases www

  • gff2aplot

    Buster:(2.0-11) Stretch:(2.0-8) pair-wise alignment-plots for genomic sequences in PostScript www

  • gff2ps

    Buster:(0.98l-2) Stretch:(0.98d-5) produces PostScript graphical output from GFF-files www

  • gfsview

    Buster:(20121130+dfsg-6) Stretch:(20121130+dfsg-4) graphical viewer for Gerris simulation files www

  • gfsview-batch

    Buster:(20121130+dfsg-6) Stretch:(20121130+dfsg-4) batch-version of viewer for Gerris simulation files www

  • ghkl

    Buster:(5.0.0.2456-1) Stretch:(5.0.0.2173-2) diffractometer computation control application www

  • ghmm

    Buster:(0.9~rc3-2) General Hidden-Markov-Model library - tools www

  • giella-core

    Buster:(0.1.1~r129227+svn121148-2) Stretch:(0.1.1~r129227+svn121148-1) GTCORE files for building Giellatekno language packages www

  • giella-sme

    Buster:(0.0.20150917~r121176-3) Stretch:(0.0.20150917~r121176-1) Giellatekno single language data for North Saami www

  • giella-sme-dev

    Buster:(0.0.20150917~r121176-3) Stretch:(0.0.20150917~r121176-1) Giellatekno single language data for North Saami (dev extras) www

  • ginga

    Buster:(2.7.2-2) Stretch:(2.6.1-2) Astronomical image viewer www

  • glam2

    Buster:(1064-5) Stretch:(1064-3) gapped protein motifs from unaligned sequences www

  • gliese

    Buster & Stretch:(3.0.95-2) stellar data set from the Third Catalogue of Nearby Stars www

  • glueviz

    Buster:(0.14.1+dfsg-1) Stretch:(0.9.1+dfsg-1) Linked data visualization www

  • gmt

    Buster:(5.4.5+dfsg-2) Stretch:(5.3.1+dfsg-2+b1) Generic Mapping Tools www

  • gmt-common

    Buster:(5.4.5+dfsg-2) Stretch:(5.3.1+dfsg-2) Generic Mapping Tools - Architecture-independent files www

  • gmt-dcw

    Buster:(1.1.4-2) Stretch:(1.1.2-2) Digital Chart of the World (DCW) for GMT www

  • gmt-gshhg

    Buster:(2.3.7-4) Stretch:(2.3.6-2) Global Self-consistent Hierarchical High-resolution Geography (GSHHG) www

  • gmt-gshhg-full

    Buster:(2.3.7-4) Stretch:(2.3.6-2) Full resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-high

    Buster:(2.3.7-4) Stretch:(2.3.6-2) High resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-low

    Buster:(2.3.7-4) Stretch:(2.3.6-2) Low resolution coastlines for the Generic Mapping Tools www

  • gnuastro

    Buster:(0.8-1) Stretch:(0.2.33-1) GNU Astronomy Utilities programs www

  • gpaw

    Buster:(1.5.1-1) Stretch:(1.1.0-1+b1) DFT and beyond within the projector-augmented wave method www

  • gpaw-data

    Buster:(0.9.20000-2) Stretch:(0.9.20000-1) gpaw datasets/setups www

  • gperiodic

    Buster:(3.0.3-1) Stretch:(2.0.10-7) periodic table application www

  • gpx

    Buster:(2.5.2-3) Stretch:(2.5.2-1) Gcode to x3g conversion post processor www

  • gpx2shp

    Buster:(0.71.0-7) Stretch:(0.71.0-4+b1) convert GPS or GPX file to ESRI Shape file www

  • gr-fcdproplus

    Buster:(3.7.25.4b6464b-5+b2) Stretch:(3.7.25.4b6464b-2) Funcube Dongle Pro Plus controller for GNU Radio www

  • grabix

    Buster:(0.1.7-1) wee tool for random access into BGZF files www

  • graphlan

    Buster:(1.1.3-1) Stretch:(1.1-2) circular representations of taxonomic and phylogenetic trees www

  • grass

    Buster:(7.6.0-1) Stretch:(7.2.0-2) Geographic Resources Analysis Support System (GRASS GIS) www

  • grass-core

    Buster:(7.6.0-1+b1) Stretch:(7.2.0-2) GRASS GIS core components www

  • grass-gui

    Buster:(7.6.0-1+b1) Stretch:(7.2.0-2) GRASS GIS graphical user interfaces www

  • gravit

    Buster:(0.5.1+dfsg-3) Stretch:(0.5.1+dfsg-2) visually stunning gravity simulator www

  • gravit-data

    Buster:(0.5.1+dfsg-3) Stretch:(0.5.1+dfsg-2) data files for Gravit www

  • gri

    Buster:(2.12.26-1+b1) Stretch:(2.12.23-10) a language for scientific illustration www

  • grinder

    Buster:(0.5.4-5) Stretch:(0.5.4-1) Versatile omics shotgun and amplicon sequencing read simulator www

  • gromacs

    Buster:(2019.1-1) Stretch:(2016.1-2) Molecular dynamics simulator, with building and analysis tools www

  • gromacs-data

    Buster:(2019.1-1) Stretch:(2016.1-2) GROMACS molecular dynamics sim, data and documentation www

  • gromacs-mpich

    Buster:(2019.1-1) Stretch:(2016.1-2) Molecular dynamics sim, binaries for MPICH parallelization www

  • gromacs-openmpi

    Buster:(2019.1-1) Stretch:(2016.1-2) Molecular dynamics sim, binaries for OpenMPI parallelization www

  • gvb

    Buster & Stretch:(1.4-1) visual simulator of 1 and 2-dimensional vibrations www

  • gwama

    Buster:(2.2.2+dfsg-2) Stretch:(2.2.2+dfsg-1) Genome-Wide Association Meta Analysis www

  • gwyddion

    Buster:(2.52-1) Stretch:(2.47-1) Scanning Probe Microscopy visualization and analysis tool www

  • gwyddion-common

    Buster:(2.52-1) Stretch:(2.47-1) architecture-independent files for Gwyddion SPM analysis tool www

  • gwyddion-plugins

    Buster:(2.52-1) Stretch:(2.47-1) plugins for Gwyddion SPM analysis tool www

  • gyoto

    Buster:(1.3.1-1) Stretch:(1.2.0-2) General relativistic geodesic integration and ray-tracing www

  • gyoto-bin

    Buster:(1.3.1-1+b1) Stretch:(1.2.0-2) General relativistic ray-tracing command-line interface www
  • Back to top

  • H

  • h5utils

    Buster:(1.13.1-3+b1) Stretch:(1.12.1-6+b1) HDF5 files visualization tools www

  • harminv

    Buster:(1.4.1-2) Stretch:(1.4-1) extraction of complex frequencies and amplitudes from time series www

  • harvest-tools

    Buster:(1.3-4) Stretch:(1.3-1) archiving and postprocessing for reference-compressed genomic multi-alignments www

  • hdf-compass

    Buster & Stretch:(0.6.0-1) viewer for HDF5 and related formats www

  • hdf5-helpers

    Buster:(1.10.4+repack-10) Stretch:(1.10.0-patch1+docs-3+deb9u1) Hierarchical Data Format 5 (HDF5) - Helper tools www

  • hdf5-tools

    Buster:(1.10.4+repack-10) Stretch:(1.10.0-patch1+docs-3+deb9u1) Hierarchical Data Format 5 (HDF5) - Runtime tools www

  • herisvm

    Buster:(0.8.2-1) Stretch:(0.7.0-1) machine learning tools for classification algorithms www

  • hfst

    Buster:(3.15.0-1.1~deb10u1) Stretch:(3.10.0~r2798-3) Helsinki Finite-State Transducer Technology www

  • hfst-ospell

    Buster:(0.5.0-2) Stretch:(0.4.0~r4643-4+b1) Spell checker library and tool based on HFST www

  • hhsuite-data

    Buster:(3.0~beta3+dfsg-3) Stretch:(3.0~beta2+dfsg-3) sensitive protein sequence searching based on HMM-HMM alignment (data) www

  • hidrd

    Buster & Stretch:(0.2.0-11) tools for parsing and generating HID report descriptors www

  • hilive

    Buster:(1.1-2) Stretch:(0.3-2) realtime alignment of Illumina reads www

  • hinge

    Buster:(0.5.0-4) long read genome assembler based on hinging www

  • hmmer

    Buster & Stretch:(3.1b2-1) profile hidden Markov models for protein sequence analysis www

  • hmmer2

    Buster:(2.3.2+dfsg-6) Stretch:(2.3.2-13) profile hidden Markov models for protein sequence analysis www

  • hmmer2-pvm

    Buster:(2.3.2+dfsg-6) Stretch:(2.3.2-13) HMMER programs with PVM (Parallel Virtual Machine) support www

  • hodie

    Buster:(1.5.0-1) Stretch:(1.5-2) prints the date in Latin www

  • horae

    Buster & Stretch:(071~svn537-2.1) interactive graphical processing and analysis of EXAFS data www

  • hpcc

    Buster:(1.5.0-1+b2) Stretch:(1.4.3-1+b2) HPC Challenge benchmark www

  • htcondor

    Buster:(8.6.8~dfsg.1-2+b1) Stretch:(8.4.11~dfsg.1-1) distributed workload management system www

  • hyantesite

    Buster & Stretch:(1.3.0-1.1) geomatic tool to compute neighbourhood population potential www

  • hyphy-common

    Buster:(2.3.14+dfsg-1) Stretch:(2.2.7+dfsg-1) Hypothesis testing using Phylogenies (common files) www

  • hyphy-mpi

    Buster:(2.3.14+dfsg-1) Stretch:(2.2.7+dfsg-1) Hypothesis testing using Phylogenies (MPI version) www

  • hyphy-pt

    Buster:(2.3.14+dfsg-1) Stretch:(2.2.7+dfsg-1) Hypothesis testing using Phylogenies (pthreads version) www
  • Back to top

  • I

  • idba

    Buster:(1.1.3-3) Stretch:(1.1.2-1) iterative De Bruijn Graph short read assemblers www

  • ifrit

    Buster:(4.1.2-6+b1) Stretch:(4.1.2-5+b3) powerful tool for visualizing 3-dimensional data sets www

  • igor

    Buster:(1.3.0+dfsg-1) infers V(D)J recombination processes from sequencing data www

  • igv

    Buster & Stretch:(2.3.90+dfsg-1) Integrative Genomics Viewer www

  • imagej

    Buster:(1.52j-1) Stretch:(1.51i+dfsg-2) Image processing program with a focus on microscopy images www

  • imagevis3d

    Buster:(3.1.0-7+b1) Stretch:(3.1.0-5) desktop volume rendering application for large data www

  • imview

    Buster:(1.1.9h-1) Stretch:(1.1.9c-17+b1) Image viewing and analysis application www

  • indelible

    Buster:(1.03-4) Stretch:(1.03-2) powerful and flexible simulator of biological evolution www

  • indigo-utils

    Buster:(1.2.3-1) Stretch:(1.1.12-2) Organic Chemistry Toolkit Utilities www

  • infernal

    Buster & Stretch:(1.0.2-2) inference of RNA secondary structural alignments www

  • inhomog

    Buster:(0.1.9.2-1) kinematical backreaction and average scale factor evolution www

  • ipig

    Buster:(0.0.r5-3) Stretch:(0.0.r5-2) integrating PSMs into genome browser visualisations www

  • iraf

    Buster:(2.16.1+2018.11.01-2) Image Reduction and Analysis Facility www

  • iraf-dev

    Buster:(2.16.1+2018.11.01-2) Image Reduction and Analysis Facility (development files) www

  • iraf-fitsutil

    Buster:(2018.07.06-3+b1) FITS utilities for IRAF

  • iraf-mscred

    Buster:(5.05+2018.07.09-1+b1) CCD mosaic reduction package for IRAF

  • iraf-noao

    Buster:(2.16.1+2018.11.01-2) IRAF NOAO data reduction package www

  • iraf-noao-dev

    Buster:(2.16.1+2018.11.01-2) IRAF NOAO data reduction package (development files) www

  • iraf-rvsao

    Buster:(2.8.3-1+b1) IRAF package to obtain radial velocities from spectra www

  • iraf-sptable

    Buster:(1.0~pre20180612-1+b1) IRAF package for Tabular Spectra

  • iraf-wcstools

    Buster:(3.9.5-3) Handle the WCS of a FITS image (IRAF package) www

  • irstlm

    Buster & Stretch:(6.00.05-2) IRST Language Modeling Toolkit www

  • ismrmrd-schema

    Buster:(1.4.0-1) Stretch:(1.3.3-1+rpi1) schema for ISMRMRD www

  • iva

    Buster:(1.0.9+ds-6) Stretch:(1.0.8+ds-1) iterative virus sequence assembler www
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  • J

  • jaligner

    Buster:(1.0+dfsg-6) Stretch:(1.0+dfsg-4) Smith-Waterman algorithm with Gotoh's improvement www

  • jalview

    Buster & Stretch:(2.7.dfsg-5) multiple alignment editor www

  • jblas

    Buster:(1.2.4-2) Stretch:(1.2.3-6) fast linear algebra library for Java www

  • jellyfish1

    Buster:(1.1.11-4) count k-mers in DNA sequences www

  • jemboss

    Buster:(6.6.0+dfsg-7) Stretch:(6.6.0+dfsg-6) graphical user interface to EMBOSS www

  • jmodeltest

    Buster:(2.1.10+dfsg-7) Stretch:(2.1.10+dfsg-5) HPC selection of models of nucleotide substitution www

  • jmol

    Buster:(14.6.4+2016.11.05+dfsg1-4) Stretch:(14.6.4+2016.11.05+dfsg1-3) Molecular Viewer www

  • jsamp

    Buster & Stretch:(1.3.5-1) Java Simple Application Messaging Protocol tool for VO www

  • jube

    Buster:(2.2.2-1) JUBE Benchmarking Environment www

  • julia

    Buster:(1.0.3+dfsg-4+rpi1) high-performance programming language for technical computing www

  • julia-common

    Buster:(1.0.3+dfsg-4+rpi1) Stretch:(0.4.7-6) high-performance programming language for technical computing (common files) www

  • julia-factcheck

    Buster & Stretch:(0.1.2-2) Midje-like testing for Julia www

  • jupyter-notebook

    Buster:(5.7.8-1) Stretch:(4.2.3-4+deb9u2) Jupyter interactive notebook www
  • Back to top

  • K

  • kalign

    Buster:(1:2.03+20110620-5) Stretch:(1:2.03+20110620-3) Global and progressive multiple sequence alignment www

  • kalzium

    Buster:(4:17.08.3-1+b1) Stretch:(4:16.08.3-1) periodic table and chemistry tools www

  • kalzium-data

    Buster:(4:17.08.3-1) Stretch:(4:16.08.3-1) data files for Kalzium www

  • khmer-common

    Buster:(2.1.2+dfsg-6) Stretch:(2.0+dfsg-10) common files for the khmer project tools www

  • kineticstools

    Buster:(0.6.1+git20180425.27a1878-2) Stretch:(0.6.1+20161222-1) detection of DNA modifications www

  • kineticstools-data

    Buster:(0.6.1+git20180425.27a1878-2) Stretch:(0.6.1+20161222-1) detection of DNA modifications -- data files www

  • king-probe

    Buster:(2.16.160404+git20180613.a09b012-1) Stretch:(2.13.110909-2) Evaluate and visualize protein interatomic packing www

  • kissplice

    Buster & Stretch:(2.1.0-1) Detection of various kinds of polymorphisms in RNA-seq data www

  • klustakwik

    Buster & Stretch:(2.0.1-1) automatic sorting of the samples (spikes) into clusters www

  • kmc

    Buster:(2.3+dfsg-7) Stretch:(2.3+dfsg-5) count kmers in genomic sequences www

  • kmer

    Buster:(0~20150903+r2013-6) Stretch:(0~20150903+r2013-3) suite of tools for DNA sequence analysis www

  • kmer-examples

    Buster:(0~20150903+r2013-6) sample data for kmer suite of tools for DNA sequence analysis www

  • konclude

    Buster:(0.6.2~dfsg-6) Stretch:(0.6.2~dfsg-3) tableau-based description logic reasoner for the semantic web www

  • kraken

    Buster:(1.1-3) Stretch:(0.10.5~beta-2) assigning taxonomic labels to short DNA sequences www

  • kst

    Buster:(2.0.8-3+b1) Stretch:(2.0.3-5+b3) scientific data plotting tool www

  • kstars

    Buster:(5:3.0.0-1) Stretch:(4:16.08.3-2) desktop planetarium, observation planning and telescope control www

  • kstars-data

    Buster:(5:3.0.0-1) Stretch:(4:16.08.3-2) data files for KStars desktop planetarium www

  • kstars-data-extra-tycho2

    Buster & Stretch:(1.1r1-9.1) Tycho-2 star catalog for KStars

  • kxterm

    Buster:(20061220+dfsg3-4.4) Stretch:(20061220+dfsg3-4.3+deb9u2) CERNLIB data analysis suite - KUIP terminal emulator www
  • Back to top

  • L

  • lagan

    Buster:(2.0-3) highly parametrizable pairwise global genome sequence aligner www

  • lamarc

    Buster:(2.1.10.1+dfsg-3) Likelihood Analysis with Metropolis Algorithm using Random Coalescence www

  • lambda-align

    Buster:(1.0.3-5) Stretch:(1.0.1-2) Local Aligner for Massive Biological DatA www

  • lambda-align2

    Buster:(2.0.0-6) Local Aligner for Massive Biological DatA - v2 www

  • lammps

    Buster:(0~20181211.gitad1b1897d+dfsg1-2) Stretch:(0~20161109.git9806da6-7) Molecular Dynamics Simulator www

  • last-align

    Buster:(963-2) Stretch:(830-1) genome-scale comparison of biological sequences www

  • lbt

    Buster & Stretch:(1.2.2-6) converts from LTL formulas to Büchi automata www

  • leaff

    Buster:(0~20150903+r2013-6+b3) Stretch:(0~20150903+r2013-3+b2) biological sequence library utilities and applications www

  • lefse

    Buster:(1.0.8-2) Stretch:(1.0+20160802-1) determine features of organisms, clades, taxonomic units, genes www

  • libadios-bin

    Buster:(1.13.1-16) Stretch:(1.11.0-1+b1) ADIOS Adaptable IO system for simulations - binaries www

  • libadios-examples

    Buster:(1.13.1-16) Examples for the ADIOS Adaptable IO system www

  • libball1.5-data

    Buster:(1.5.0+git20180813.37fc53c-3) Biochemical Algorithms Library (data files) www

  • libbio-tools-phylo-paml-perl

    Buster:(1.7.3-2) Bioperl interface to the PAML suite www

  • libbio-tools-run-alignment-clustalw-perl

    Buster:(1.7.4-1) Bioperl interface to Clustal W www

  • libbio-tools-run-alignment-tcoffee-perl

    Buster:(1.7.4-1) Bioperl interface to T-Coffee www

  • libclhep2.1v5

    Buster & Stretch:(2.1.4.1+dfsg-1) CLHEP: A Class Library for High Energy Physics www

  • libclinica0

    Buster & Stretch:(0.3.0-1) Simple medical records manager (shared library) www

  • libcollada-dom2.4-dp0

    Buster & Stretch:(2.4.4+ds1-2) collada-dom 2.4.0 - COLLADA using double precision www

  • libdynamicedt3d1.8

    Buster & Stretch:(1.8.1+dfsg-1) Incrementally updatable Euclidean distance transform library www

  • libeccodes-data

    Buster:(2.12.0-1) Stretch:(2.0.2-5) GRIB and BUFR enecoding/encoding software library - data www

  • libej0

    Buster:(4.4.4+dfsg-4) Stretch:(4.2.1+dfsg-1) hardware & software framework for developing science experiments www

  • libgeotiff-epsg

    Buster:(1.4.3-1) Stretch:(1.4.2-1) GeoTIFF library -- EPSG Geodetic Parameter Dataset www

  • libgfsgl0

    Buster:(20121130+dfsg-6) Stretch:(20121130+dfsg-4) graphical viewer for Gerris simulation files. Shared library www

  • libghemical-data

    Buster:(3.0.0-4.2) Stretch:(3.0.0-4.1) Molecular Modelling Library (data files) www

  • libgiac0

    Buster:(1.4.9.69+dfsg1-2) Computer Algebra System C++ library www

  • libgnuradio-fcdproplus3.7.11

    Buster:(3.7.25.4b6464b-5+b2) Funcube Dongle Pro Plus controller for GNU Radio (runtime) www

  • libgrib-api-data

    Buster & Stretch:(1.8.0.1-1) grib_api definition files www

  • libgtkdatabox0-glade

    Buster:(1:0.9.3.1-1) Gtk+ library to display large amounts of numerical data (glade API) www

  • libgtkdatabox0-libglade

    Buster:(1:0.9.3.1-1) Gtk+ library to display large amounts of numerical data (glade lib) www

  • libhdf5-jni

    Buster:(1.10.4+repack-10) Stretch:(1.10.0-patch1+docs-3+deb9u1) native library used by libhdf5-java www

  • liblas-bin

    Buster:(1.8.1-10) Stretch:(1.8.1-3) ASPRS LiDAR data translation toolset www

  • liblemon-utils

    Buster:(1.3.1+dfsg-2) Stretch:(1.3.1+dfsg-1) Library for Efficient Modeling and Optimization in Networks (utilities) www

  • libliggghts3

    Buster:(3.8.0+repack1-4) Stretch:(3.5.0+repack1-10) Open Source DEM Particle Simulation Software. Shared library www

  • liblinear-tools

    Buster:(2.1.0+dfsg-4) Stretch:(2.1.0+dfsg-2) Standalone applications for LIBLINEAR www

  • liblorene-debian1

    Buster:(0.0.0~cvs20161116+dfsg-1+b2) Stretch:(0.0.0~cvs20161116+dfsg-1) liblorene shared library www

  • liblorene-export-debian0

    Buster:(0.0.0~cvs20161116+dfsg-1+b2) Stretch:(0.0.0~cvs20161116+dfsg-1) liblorene_export shared library www

  • liblorenef77-debian1

    Buster:(0.0.0~cvs20161116+dfsg-1+b2) Stretch:(0.0.0~cvs20161116+dfsg-1) liblorenef77 shared library www

  • libmed-tools

    Buster:(4.0.0+repack-7) Stretch:(3.0.6-11) Runtime tools to handle MED files www

  • libmstoolkit-tools

    Buster:(82-6) libraries for manipulating mass spectrometry data - tools www

  • libncarg-bin

    Buster:(6.5.0-2) Stretch:(6.3.0-13) NCAR command-language library - development tools www

  • libncarg-data

    Buster:(6.5.0-2) Stretch:(6.3.0-13) NCAR command-language library - Data www

  • libngram-tools

    Buster:(1.3.2-3) Stretch:(1.3.0-1) OpenGRM n-gram Language Modeling toolkit www

  • libocas-tools

    Buster:(0.97+dfsg-5) Stretch:(0.97+dfsg-3) Standalone applications implementing the OCAS solver www

  • liboctomap1.8

    Buster & Stretch:(1.8.1+dfsg-1) 3D occupancy grid mapping approach library for mapping www

  • libopenfoam

    Buster:(1812+dfsg1-2) Stretch:(4.1+dfsg1-1) Open source toolbox for Computational Fluid Dynamics (CFD) - libraries www

  • libopengm-bin

    Buster:(2.3.6+20160905-1+rpi1) Stretch:(2.3.6+20160905-1+b1) command line tools for OpenGM www

  • libpluto-jpl-eph-dev

    Buster:(0.0~git20180228-1.1) development files to interact with JPL ephemeres data www

  • libpluto-lunar-dev

    Buster:(0.0~git20180825.e34c1d1-1) development files for astronomical Lunar library www

  • libpwiz-tools

    Buster:(3.0.18342-2) Stretch:(3.0.9393-1+b1) ProteoWizard command line tools www

  • libqgis-customwidgets

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) QGIS custom widgets for Qt Designer www

  • librsl1

    Buster:(1.43-1.2) Stretch:(1.43-1.1) TRMM Radar Software Library www

  • libsilo-bin

    Buster:(4.10.2.real-5+b1) Stretch:(4.10.2-6+b2) Utilities to manipulate libsilo files www

  • libssm-bin

    Buster:(1.4.0-1) macromolecular superposition library - binaries www

  • libstxxl1v5

    Buster:(1.4.1-3) Stretch:(1.4.1-2) C++ Standard Template Library for extra large datasets www

  • libxy-bin

    Buster & Stretch:(1.3-1.1) xylib - utilities www

  • liggghts

    Buster:(3.8.0+repack1-4) Stretch:(3.5.0+repack1-10) Open Source DEM Particle Simulation Software. www

  • limereg

    Buster:(1.4.1-4) Stretch:(1.4.0-2) Lightweight Image Registration www

  • linguider

    Buster:(4.1.1-1) Astronomical autoguiding program for Linux www

  • litl-tools

    Buster:(0.1.9-4) Stretch:(0.1.8-2) Lightweight Trace Library - tools www

  • logcentral

    Buster:(2.7-1.1+b1) Stretch:(2.7-1.1) Logging service for distributed applications www

  • logcentral-tools

    Buster:(2.7-1.1+b1) Stretch:(2.7-1.1) Logging service for distributed applications www

  • logol

    Buster:(1.7.9-1) Stretch:(1.7.5-1) Pattern matching tool using Logol language www

  • logol-bin

    Buster:(1.7.9-1+b1) Stretch:(1.7.5-1) Pattern matching tool using Logol language www

  • loki

    Buster:(2.4.7.4-8) Stretch:(2.4.7.4-6) MCMC linkage analysis on general pedigrees

  • looptools

    Buster & Stretch:(2.8-1) Integral Evaluator of One-loop Feynman Diagram www

  • lorene

    Buster & Stretch:(0.0.0~cvs20161116+dfsg-1) framework for numerical relativity www

  • lorene-codes-src

    Buster & Stretch:(0.0.0~cvs20161116+dfsg-1) source files of LORENE-based codes www

  • ltrsift

    Buster:(1.0.2-8) Stretch:(1.0.2-7) postprocessing and classification of LTR retrotransposons www

  • lttoolbox

    Buster:(3.5.0-3) Stretch:(3.3.3~r68466-2) Apertium lexical processing modules and tools www

  • lttoolbox-dev

    Buster:(3.5.0-3) Stretch:(3.3.3~r68466-2) Development tools and library for lttoolbox www

  • lucy

    Buster:(1.20-1) DNA sequence quality and vector trimming tool www

  • lutefisk

    Buster & Stretch:(1.0.7+dfsg-4) de novo interpretation of peptide CID spectra www

  • lxi-tools

    Buster:(1.21-1) LAN eXtensions for Instrumentation (LXI) software interface www
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  • M

  • macs

    Buster:(2.1.2.1-1) Stretch:(2.1.1.20160309-1) Model-based Analysis of ChIP-Seq on short reads sequencers www

  • macsyfinder

    Buster:(1.0.5-2) Stretch:(1.0.2-3) detection of macromolecular systems in protein datasets www

  • maffilter

    Buster:(1.3.1+dfsg-1) Stretch:(1.1.0-1+dfsg-2+b1) process genome alignment in the Multiple Alignment Format www

  • maffilter-examples

    Buster:(1.3.1+dfsg-1) Stretch:(1.1.0-1+dfsg-2) process genome alignment in the Multiple Alignment Format (example data) www

  • mafft

    Buster:(7.407-2) Stretch:(7.307-1) Multiple alignment program for amino acid or nucleotide sequences www

  • magics++

    Buster:(3.3.1-1) Stretch:(2.30.0-5) Executables for the magics++ library www

  • mapdamage

    Buster:(2.0.9+dfsg-1) Stretch:(2.0.6+dfsg-2) tracking and quantifying damage patterns in ancient DNA sequences www

  • mapsembler2

    Buster:(2.2.4+dfsg-3+b1) Stretch:(2.2.3+dfsg-3+b1) bioinformatics targeted assembly software www

  • maq

    Buster:(0.7.1-8) Stretch:(0.7.1-7) maps short fixed-length polymorphic DNA sequence reads to reference sequences www

  • maqview

    Buster:(0.2.5-9) Stretch:(0.2.5-7) graphical read alignment viewer for short gene sequences www

  • mash

    Buster:(2.1+dfsg-2) Stretch:(1.1.1-2) fast genome and metagenome distance estimation using MinHash www

  • matlab-gdf

    Buster:(0.1.2-2.1) Stretch:(0.1.2-2) IO library for the GDF -- Matlab interface www

  • maude

    Buster & Stretch:(2.7-2) high-performance logical framework www

  • mauve-aligner

    Buster:(2.4.0+4736-1+b4) Stretch:(2.4.0+4734-3) multiple genome alignment www

  • mayavi2

    Buster:(4.5.0-1+b1) Stretch:(4.5.0-1) scientific visualization package for 2-D and 3-D data www

  • mbt

    Buster:(3.4-1) Stretch:(3.2.16-1) memory-based tagger-generator and tagger www

  • mbtserver

    Buster:(0.12-1) Stretch:(0.11-1) Server extensions for the MBT tagger www

  • meep

    Buster:(1.7.0-3) Stretch:(1.3-4+b1) software package for FDTD simulation www

  • meep-lam4

    Buster:(1.7.0-3) Stretch:(1.3-2+b1) software package for FDTD simulation, parallel (OpenMPI) version www

  • meep-mpi-default

    Buster:(1.7.0-3) Stretch:(1.3-3+b3) software package for FDTD simulation, parallel (OpenMPI) version www

  • meep-mpich2

    Buster:(1.7.0-3) Stretch:(1.3-4+b1) software package for FDTD simulation, parallel (OpenMPI) version www

  • meep-openmpi

    Buster:(1.7.0-3) Stretch:(1.3-3+b3) software package for FDTD simulation, parallel (OpenMPI) version www

  • melting

    Buster:(5.2.0-1) Stretch:(4.3.1+dfsg-2) compute the melting temperature of nucleic acid duplex www

  • merkaartor

    Buster:(0.18.3+ds-5+b1) Stretch:(0.18.3+ds-1+b1) map editor for OpenStreetMap.org www

  • meryl

    Buster:(0~20150903+r2013-6+b3) Stretch:(0~20150903+r2013-3+b2) in- and out-of-core kmer counting and utilities www

  • metaphlan2

    Buster:(2.7.8-1) Stretch:(2.6.0+ds-2) Metagenomic Phylogenetic Analysis www

  • metaphlan2-data

    Buster:(2.6.0+ds-4) Stretch:(2.6.0+ds-2) data package for Metagenomic Phylogenetic Analysis www

  • metastudent

    Buster:(2.0.1-6) Stretch:(2.0.1-4) predictor of Gene Ontology terms from protein sequence www

  • metastudent-data

    Buster:(2.0.1-4) Stretch:(2.0.1-2) predictor of Gene Ontology terms from protein sequence - data files www

  • metastudent-data-2

    Buster:(1.0.0-4) Stretch:(1.0.0-2) predictor of Gene Ontology terms from protein sequence - data #2 www

  • metview

    Buster:(5.3.0-2) Stretch:(4.8.0-4) Interactive data visualization and analysis environment, www

  • metview-data

    Buster:(5.3.0-2) Stretch:(4.8.0-4) Data needed for the Metview data analysis environment www

  • mgltools-cadd

    Buster:(1.5.7-4) Stretch:(1.5.7-1) Computer Aided Drug Discovery (CADD) Pipeline www

  • mgltools-dejavu

    Buster:(1.5.7-3) Stretch:(1.5.7-1) visualization of 3D geometry using the OpenGL with Python www

  • mgltools-mglutil

    Buster:(1.5.7-4) Stretch:(1.5.7-2) Molecular Graphics Laboratory utility collection www

  • mgltools-molkit

    Buster:(1.5.7-3) Stretch:(1.5.7~rc1+cvs.20140424-1) Python classes to read and manipulate molecules www

  • mgltools-networkeditor

    Buster:(1.5.7-4) Stretch:(1.5.7-1) Python GUI library for the editing of networks www

  • mgltools-pmv

    Buster & Stretch:(1.5.7-1) Python-based Molecular Viewer www

  • mgltools-pmv-test

    Buster & Stretch:(1.5.7-1) Python-based Molecular Viewer (functionality tests) www

  • mgltools-pyautodock

    Buster:(1.5.7-3) Stretch:(1.5.7-1) Python implementation of autodock www

  • mgltools-pybabel

    Buster:(1.5.7-3) Stretch:(1.5.7-1) molecular structure file access and interpretation www

  • mgltools-scenario2

    Buster:(1.5.7-2) Stretch:(1.5.7-1) Python-based viewer of molecular structures www

  • mgltools-support

    Buster:(1.5.7-3) Stretch:(1.5.7-1) Update mechanism of MGLTools www

  • mgltools-symserv

    Buster:(1.5.7-2) Stretch:(1.5.7-1) Symetry server www

  • mgltools-viewerframework

    Buster:(1.5.7-3) Stretch:(1.5.7-1) ViewerFramework supports building visualization applications www

  • mgltools-vision

    Buster:(1.5.7+dfsg-2) Stretch:(1.5.7-1) Python-based Visual Programming Environment www

  • mgltools-visionlibraries

    Buster:(1.5.7-2) Stretch:(1.5.7-1) Extensions for Python-based Visual Programming Environment www

  • mgltools-volume

    Buster:(1.5.7-3) Stretch:(1.5.7-1) Volume rendering Python package www

  • mgltools-webservices

    Buster:(1.5.7-3) Stretch:(1.5.7-1) webservices for components of autodocktools www

  • mhap

    Buster:(2.1.3+dfsg-2) Stretch:(2.1.1+dfsg-1) locality-sensitive hashing to detect long-read overlaps www

  • mia-doctools

    Buster:(2.4.6-4) Stretch:(2.4.3-5) Helper scripts for run-time document creation www

  • mia-tools

    Buster:(2.4.6-4+b1) Stretch:(2.4.3-5) Command line tools for gray scale image processing www

  • mia-viewit

    Buster:(1.0.5-2) Stretch:(1.0.4-1) Viewer program for 3D data sets created by using MIA www

  • mialmpick

    Buster:(0.2.14-2) Stretch:(0.2.13-1) Tools for landmark picking in 3D volume data sets www

  • microbegps

    Buster:(1.0.0-3) Stretch:(1.0.0-2) explorative taxonomic profiling tool for metagenomic data www

  • microbiomeutil

    Buster:(20101212+dfsg1-2) Stretch:(20101212+dfsg1-1) Microbiome Analysis Utilities www

  • microbiomeutil-data

    Buster:(20101212+dfsg1-2) Stretch:(20101212+dfsg1-1) Reference 16S sequences and NAST-alignments used by microbiomeutil tools www

  • microhope

    Buster:(4.4.4+dfsg-4) Stretch:(4.2.1+dfsg-1) hardware & software framework to learn microcontrollers www

  • minc-tools

    Buster:(2.3.00+dfsg-3+b1) Stretch:(2.3.00+dfsg-1.1+b1) MNI medical image format tools www

  • minia

    Buster:(1.6906-2) Stretch:(1.6906-1) short-read biological sequence assembler www

  • miniasm

    Buster:(0.3+dfsg-1) Stretch:(0.2+dfsg-2) ultrafast de novo assembler for long noisy DNA sequencing reads www

  • minimap

    Buster:(0.2-4) Stretch:(0.2-3) tool for approximate mapping of long biosequences such as DNA reads www

  • minisat

    Buster & Stretch:(1:2.2.1-5) Fast and lightweight SAT solver www

  • minisat+

    Buster:(1.0-4) Stretch:(1.0-3) solver for pseudo-Boolean constraints www

  • mipe

    Buster:(1.1-7) Stretch:(1.1-5) Tools to store PCR-derived data www

  • mira-assembler

    Buster:(4.9.6-4) Stretch:(4.9.6-2) Whole Genome Shotgun and EST Sequence Assembler www

  • mira-rfam-12s-rrna

    Buster:(4.9.6-4) Stretch:(4.9.6-2) extract of RFAM 12 rRNA database www

  • missfits

    Buster:(2.8.0-2) Stretch:(2.8.0-1) Basic maintenance and packaging tasks on FITS files www

  • mitools

    Buster:(2.0.3-1) Stretch:(2.0.2-0.3+rpi1) view, convert and perform basic maths with medical image datasets www

  • mlpack-bin

    Buster:(3.0.4-1) Stretch:(2.1.1-1) intuitive, fast, scalable C++ machine learning library (binaries) www

  • mlv-smile

    Buster:(1.47-6) Stretch:(1.47-4) Find statistically significant patterns in sequences www

  • mmass

    Buster & Stretch:(5.5.0-5) Mass spectrometry tool for proteomics www

  • mmass-modules

    Buster & Stretch:(5.5.0-5) Mass spectrometry tool for proteomics - extension modules www

  • mobyle

    Buster:(1.5.5+dfsg-6) Stretch:(1.5.5+dfsg-2) Web portal that provides web forms for command-line software www

  • mobyle-programs

    Buster:(5.1.2-3) Stretch:(5.1.2-1) program descriptions for the mobyle portal www

  • mobyle-tutorials

    Buster:(1.5.0-4) Stretch:(1.5.0-2) program tutorials for the mobyle portal www

  • mobyle-utils

    Buster:(1.5.5+dfsg-6) Stretch:(1.5.5+dfsg-2) binary tools used by Mobyle www

  • mocassin

    Buster:(2.02.73-1) Stretch:(2.02.72-2) MOnte CArlo SimulationS of Ionised Nebulae www

  • mocassin-benchmarks

    Buster:(2.02.73-1) Stretch:(2.02.72-2) benchmarks for the photoionisation code MOCASSIN www

  • mocassin-data

    Buster:(2.02.73-1) Stretch:(2.02.72-2) atomic and optical data for the photoionisation code MOCASSIN www

  • mocassin-examples

    Buster:(2.02.73-1) Stretch:(2.02.72-2) Examples for the photoionisation code MOCASSIN www

  • molds

    Buster:(0.3.1-1+b3) Stretch:(0.3.1-1+b2) Semi-empirical electronic structure and molecular dynamics www

  • mona

    Buster & Stretch:(1.4-17-1) theorem prover based on automata www

  • montage

    Buster:(6.0+dfsg-6) Stretch:(4.0+dfsg-3+b3) Toolkit for assembling FITS images into mosaics www

  • montage-gridtools

    Buster:(6.0+dfsg-6) Stretch:(4.0+dfsg-3+b3) Create files to run montage on the grid www

  • montecarlo-base

    Buster & Stretch:(20061220+dfsg3-3.1) [Physics] Common files for CERNLIB Monte Carlo libraries www

  • montecarlo-data

    Buster & Stretch:(20061220+dfsg3-3.1) [Physics] data for CERNLIB Monte Carlo libraries www

  • mopac7-bin

    Buster & Stretch:(1.15-6) Semi-empirical Quantum Chemistry Library (binaries) www

  • morse-simulator

    Buster:(1.4-5) Stretch:(1.4-2+b3) Multi-OpenRobot Simulation Engine www

  • morse-simulator-data

    Buster:(1.4-5) Stretch:(1.4-2) Multi-OpenRobot Simulation Engine www

  • mothur

    Buster:(1.41.21-1) Stretch:(1.38.1.1-1) sequence analysis suite for research on microbiota www

  • mozilla-biofox

    Buster & Stretch:(1.6-1) extension of bioinformatics tools to Iceape and Iceweasel browsers www

  • mpb

    Buster:(1.7.0-5) Stretch:(1.5-2+b5) MIT Photonic-Bands www

  • mpb-mpi

    Buster:(1.7.0-5) Stretch:(1.5-2+b5) MIT Photonic-Bands, parallel (mpich) version www

  • mpb-scm

    Buster:(1.7.0-5) Stretch:(1.5-2) MIT Photonic-Bands initialisation files www

  • mpgrafic

    Buster:(0.3.18-1) MPI version of N-body initial conditions grafic package www

  • mpi-testsuite

    Buster:(3.2+dfsg-1) MPI testsuite results www

  • mpqc

    Buster:(2.3.1-19) Stretch:(2.3.1-18+deb9u1) Massively Parallel Quantum Chemistry Program www

  • mpqc-support

    Buster:(2.3.1-19) Stretch:(2.3.1-18+deb9u1) Massively Parallel Quantum Chemistry Program (support tools) www

  • mpqc3-data

    Buster:(0.0~git20170114-4.1) Stretch:(0.0~git20160216-7) Massively Parallel Quantum Chemistry Program (data files) www

  • mptp

    Buster:(0.2.4-1) single-locus species delimitation www

  • mrbayes

    Buster:(3.2.6+dfsg-2+b6) Stretch:(3.2.6+dfsg-1+b2) Bayesian Inference of Phylogeny www

  • mrbayes-mpi

    Buster:(3.2.6+dfsg-2+b6) Stretch:(3.2.6+dfsg-1+b2) Bayesian Inference of Phylogeny - mpi version www

  • mriconvert

    Buster:(1:2.1.0-3) Stretch:(1:2.1.0-1) medical image file conversion utility www

  • mricron

    Buster:(0.20140804.1~dfsg.1-3) Stretch:(0.20140804.1~dfsg.1-2) magnetic resonance image conversion, viewing and analysis www

  • mricron-data

    Buster:(0.20140804.1~dfsg.1-3) Stretch:(0.20140804.1~dfsg.1-2) data files for MRIcron www

  • mrpt-apps

    Buster:(1:1.5.6-1+b1) Stretch:(1:1.4.0-7) Mobile Robot Programming Toolkit - Console and GUI applications www

  • mrpt-common

    Buster:(1:1.5.6-1) Stretch:(1:1.4.0-7) Mobile Robot Programming Toolkit - Example datasets and files www

  • mrtrix

    Buster:(0.2.13-2) Stretch:(0.2.12-2) diffusion-weighted MRI white matter tractography www

  • mseed2sac

    Buster:(2.2+ds1-4) Convert MiniSEED time series data to SAC www

  • msxpertsuite

    Buster:(5.7.3-1) mass spectrometry software suite - metapackage www

  • msxpertsuite-massxpert

    Buster:(5.7.3-1) mass spectrometry software suite - massXpert www

  • msxpertsuite-massxpert-data-doc

    Buster:(5.7.3-1) mass spectrometry software suite - massXpert - data and doc www

  • msxpertsuite-minexpert

    Buster:(5.7.3-1) mass spectrometry software suite - mineXpert www

  • msxpertsuite-minexpert-data-doc

    Buster:(5.7.3-1) mass spectrometry software suite - mineXpert - data and doc www

  • mummer

    Buster:(3.23+dfsg-4) Stretch:(3.23+dfsg-2) Efficient sequence alignment of full genomes www

  • munipack

    Buster:(0.5.11-2) Stretch:(0.5.7-2) Astronomical photometry software package www

  • munipack-cli

    Buster:(0.5.11-2) Stretch:(0.5.7-2) Command line interface of Munipack www

  • munipack-core

    Buster:(0.5.11-2) Stretch:(0.5.7-2) Core routines of Munipack www

  • munipack-gui

    Buster:(0.5.11-2) Stretch:(0.5.7-2) Graphical user interface of Munipack www

  • murasaki

    Buster:(1.68.6-8+b8) Stretch:(1.68.6-6+b3) homology detection tool across multiple large genomes www

  • murasaki-common

    Buster:(1.68.6-8) Stretch:(1.68.6-6) homology detection tool across multiple large genomes (common files) www

  • murasaki-mpi

    Buster:(1.68.6-8+b8) Stretch:(1.68.6-6+b3) homology detection tool across multiple large genomes (MPI-version) www

  • muscle

    Buster:(1:3.8.1551-2) Stretch:(1:3.8.31+dfsg-2) Multiple alignment program of protein sequences www

  • music-bin

    Buster:(1.0.7-4+b2) Stretch:(1.0.7-1.3) Multi-Simulation Coordinator for MPI -- Utilities www

  • mustang

    Buster:(3.2.3-3) Stretch:(3.2.3-1) multiple structural alignment of proteins www

  • mustang-testdata

    Buster:(3.2.3-3) Stretch:(3.2.3-1) multiple structural alignment of proteins, test data www
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  • N

  • nanook

    Buster:(1.33+dfsg-1) pre- and post-alignment analysis of nanopore sequencing data www

  • nast-ier

    Buster:(20101212+dfsg1-2) Stretch:(20101212+dfsg1-1) NAST-based DNA alignment tool www

  • nautic

    Buster:(1.5-4) Stretch:(1.5-1.1+b1) computation of observer position in astro-navigation www

  • ncbi-blast+

    Buster:(2.8.1-1+deb10u1) Stretch:(2.6.0-1) next generation suite of BLAST sequence search tools www

  • ncbi-blast+-legacy

    Buster:(2.8.1-1+deb10u1) Stretch:(2.6.0-1) NCBI Blast legacy call script www

  • ncbi-entrez-direct

    Buster:(10.9.20190219+ds-1) Stretch:(6.10.20170123+ds-1) NCBI Entrez utilities on the command line www

  • ncbi-epcr

    Buster:(2.3.12-1-7) Stretch:(2.3.12-1-4) Tool to test a DNA sequence for the presence of sequence tagged sites www

  • ncbi-rrna-data

    Buster:(6.1.20170106+dfsg1-0+deb10u2) Stretch:(6.1.20170106+dfsg1-0+deb9u1) large rRNA BLAST databases distributed with the NCBI toolkit www

  • ncbi-seg

    Buster:(0.0.20000620-5) Stretch:(0.0.20000620-3) tool to mask segments of low compositional complexity in amino acid sequences www

  • ncbi-tools-bin

    Buster:(6.1.20170106+dfsg1-0+deb10u2) Stretch:(6.1.20170106+dfsg1-0+deb9u1) NCBI libraries for biology applications (text-based utilities) www

  • ncbi-tools-x11

    Buster:(6.1.20170106+dfsg1-0+deb10u2) Stretch:(6.1.20170106+dfsg1-0+deb9u1) NCBI libraries for biology applications (X-based utilities) www

  • ncl-ncarg

    Buster:(6.5.0-2) Stretch:(6.3.0-13) NCAR Command Language and NCAR graphics www

  • ncl-tools

    Buster:(2.1.21+git20180827.c71b264-2) Stretch:(2.1.18+dfsg-2) tools to deal with NEXUS files www

  • nco

    Buster:(4.7.9-1) Stretch:(4.6.3-1) Command-line operators to analyze netCDF files www

  • ncoils

    Buster:(2002-7) Stretch:(2002-4) coiled coil secondary structure prediction www

  • ncview

    Buster:(2.1.8+ds-3+b1) Stretch:(2.1.7+ds-1+b1) X11 visual browser for NetCDF format files www

  • neat

    Buster:(2.2-1) Stretch:(2.0-2) Nebular Empirical Analysis Tool www

  • neobio

    Buster:(0.0.20030929-4) Stretch:(0.0.20030929-2) computes alignments of amino acid and nucleotide sequences www

  • netcdf-bin

    Buster:(1:4.6.2-1+b1) Stretch:(1:4.4.1.1-2) Programs for reading and writing NetCDF files www

  • neurodebian

    Buster:(0.38.3) Stretch:(0.37.6) neuroscience-oriented distribution - repository configuration www

  • neurodebian-archive-keyring

    Buster:(0.38.3) Stretch:(0.37.6) neuroscience-oriented distribution - GnuPG archive keys www

  • neurodebian-desktop

    Buster:(0.38.3) Stretch:(0.37.6) neuroscience-oriented distribution - desktop integration www

  • neurodebian-dev

    Buster:(0.38.3) Stretch:(0.37.6) neuroscience-oriented distribution - development tools www

  • neurodebian-freeze

    Buster:(0.38.3) nd_freeze tool to freeze APT sources to use snapshots www

  • neurodebian-popularity-contest

    Buster:(0.38.3) Stretch:(0.37.6) neuroscience-oriented distribution - popcon integration www

  • nifti2dicom-data

    Buster & Stretch:(0.4.11-1) data files for nifti2dicom www

  • njplot

    Buster:(2.4-8) Stretch:(2.4-7) phylogenetic tree drawing program www

  • node-sphericalmercator

    Buster & Stretch:(1.0.1-2) Spherical Mercator projection support for NodeJS www

  • norsnet

    Buster:(1.0.17-4) Stretch:(1.0.17-2) tool to identify unstructured loops in proteins www

  • norsp

    Buster:(1.0.6-4) Stretch:(1.0.6-2) predictor of non-regular secondary structure www

  • numdiff

    Buster:(5.9.0-1) Stretch:(5.8.1-2) Compare similar files with numeric fields www

  • nutsqlite

    Buster:(2.0.6-1) Stretch:(1.9.9.3-2) Dietary nutrition analysis software www

  • nwchem

    Buster:(6.8.1-5) Stretch:(6.6+r27746-2+b1) High-performance computational chemistry software www

  • nwchem-data

    Buster:(6.8.1-5) Stretch:(6.6+r27746-2) High-performance computational chemistry software (data files) www
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  • O

  • oar-web-status

    Buster:(2.5.8-1+deb10u1) Stretch:(2.5.7-3) OAR batch scheduler visualization tool package www

  • obdgpslogger

    Buster:(0.16-1.3+b1) Stretch:(0.16-1.3) suite of tools to log OBDII and GPS data www

  • objcryst-fox

    Buster & Stretch:(1.9.6.0-2.1+b1) Free Objects for Xtallography www

  • occt-draw

    Buster:(7.3.0+dfsg1-5+rpi1) Open CASCADE Technology command interpreter and graphical test system www

  • oce-draw

    Buster:(0.18.2-3) Stretch:(0.17.2-2) OpenCASCADE Community Edition CAE platform shared library www

  • octave-bart

    Buster:(0.4.04-2) Stretch:(0.4.00-1) Octave bindings for BART www

  • octave-biosig

    Buster:(1.9.3-2) Stretch:(1.3.0-2.2) Octave bindings for BioSig library www

  • octave-gdf

    Buster:(0.1.2-2.1+b2) Stretch:(0.1.2-2+b5) IO library for the GDF -- Octave interface www

  • octave-psychtoolbox-3

    Buster:(3.0.15.20190207.dfsg1-1) Stretch:(3.0.14.20170103+git6-g605ff5c.dfsg1-1) toolbox for vision research -- Octave bindings www

  • octomap-tools

    Buster & Stretch:(1.8.1+dfsg-1) Tools for 3D occupancy grid mapping www

  • odil

    Buster:(0.10.0-3) Stretch:(0.7.3-1) C++11 library for the DICOM standard (application) www

  • odin

    Buster:(2.0.3-1) Stretch:(2.0.2-0.3+rpi1) develop, simulate and run magnetic resonance sequences www

  • ogdi-bin

    Buster:(3.2.1+ds-4) Stretch:(3.2.0+ds-2) Open Geographic Datastore Interface Library -- utilities www

  • ompl-plannerarena

    Buster:(1.4.2+ds1-1) Open Motion Planning Library (OMPL) plannerarena www

  • openbabel

    Buster:(2.4.1+dfsg-3) Stretch:(2.3.2+dfsg-3) Chemical toolbox utilities (cli) www

  • openbabel-gui

    Buster:(2.4.1+dfsg-3) Stretch:(2.3.2+dfsg-3) Chemical toolbox utilities (graphical user interface) www

  • opencaster

    Buster & Stretch:(3.2.2+dfsg-1.1) MPEG2 transport stream data generator and packet manipulator www

  • openfoam

    Buster:(1812+dfsg1-2) Stretch:(4.1+dfsg1-1) Open source toolbox for Computational Fluid Dynamics (CFD) - binaries www

  • openfoam-examples

    Buster:(1812+dfsg1-2) Stretch:(4.1+dfsg1-1) Open source toolbox for Computational Fluid Dynamics (CFD) - examples www

  • openmolar

    Buster & Stretch:(1.0.15-gd81f9e5-1) dental practice management software www

  • openms

    Buster:(2.4.0-real-1) Stretch:(2.0.0-4) package for LC/MS data management and analysis www

  • openms-common

    Buster:(2.4.0-real-1) Stretch:(2.0.0-4) package for LC/MS data management and analysis - shared data www

  • openmx

    Buster:(3.8.5+dfsg1-1) Stretch:(3.7.6-1+b2) package for nano-scale material simulations www

  • openmx-data

    Buster:(3.8.5+dfsg1-1) Stretch:(3.7.6-1) package for nano-scale material simulations (data) www

  • openrocket

    Buster:(15.03.5) Stretch:(15.03) Model Rocket Simulator www

  • opensesame

    Buster & Stretch:(0.27.4-2.1) graphical experiment builder for the social sciences www

  • openuniverse

    Buster & Stretch:(1.0beta3.1+dfsg-6) 3D Universe Simulator www

  • openuniverse-common

    Buster & Stretch:(1.0beta3.1+dfsg-6) 3D Universe Simulator data files www

  • opj2dat

    Buster & Stretch:(20080225-2.2) OriginLab Origin project files to data files converter www

  • optgeo

    Buster:(2.25-1) Stretch:(2.23-1) simulator for geometrical optics www

  • opticalraytracer

    Buster & Stretch:(3.2-1.1) Virtual lens design workshop www

  • origami

    Buster & Stretch:(1.2.7+really0.7.4-1.1) command-line management tool for Folding @ Home clients www

  • orthanc

    Buster:(1.5.6+dfsg-1) Stretch:(1.2.0+dfsg-1) Lightweight, RESTful DICOM server for medical imaging www

  • orthanc-dicomweb

    Buster:(0.6+dfsg-1) Stretch:(0.3+dfsg-1+b6) Plugin to extend Orthanc with support of WADO and DICOMweb www

  • orthanc-imagej

    Buster:(1.2+dfsg-1) Stretch:(1.1+dfsg-1) ImageJ plugin to import images from Orthanc www

  • orthanc-mysql

    Buster:(2.0-2) Plugins to use MySQL or MariaDB as a database back-end to Orthanc www

  • orthanc-postgresql

    Buster:(3.2-1) Stretch:(2.0-3) Plugins to use PostgreSQL as a database back-end to Orthanc www

  • orthanc-webviewer

    Buster:(2.5-1) Stretch:(2.2-1+b6) Web viewer of medical images for Orthanc www

  • orthanc-wsi

    Buster:(0.6-2) Whole-slide imaging support for Orthanc (digital pathology) www

  • ossim-core

    Buster:(2.6.2-1) Stretch:(1.8.20.3+ds-5+b1) OSSIM core utilities www

  • otf-trace

    Buster:(1.12.5+dfsg-4) Stretch:(1.12.5+dfsg-2+b1) Open Trace Format support library - development files www
  • Back to top

  • P

  • p4vasp

    Buster:(0.3.30+dfsg-5+b2) Stretch:(0.3.29+dfsg-3+b4) visualization suite for the Vienna Ab-initio Simulation Package (VASP) www

  • paje.app

    Buster:(1.98-1+b7) Stretch:(1.98-1+b4) generic visualization tool (Gantt chart and more)

  • pal2nal

    Buster:(14.1-2) converts proteins to genomic DNA alignment www

  • paml

    Buster:(4.9h+dfsg-1) Phylogenetic Analysis by Maximum Likelihood (PAML) www

  • paraclu

    Buster:(9-2) Stretch:(9-1) Parametric clustering of genomic and transcriptomic features www

  • paraview

    Buster:(5.4.1+dfsg4-3.1+b6) Stretch:(5.1.2+dfsg1-2) Parallel Visualization Application www

  • parsinsert

    Buster:(1.04-4) Stretch:(1.04-2) Parsimonious Insertion of unclassified sequences into phylogenetic trees www

  • parsinsert-testdata

    Buster:(1.04-4) Test data for parsinsert www

  • parsnp

    Buster:(1.2+dfsg-5+b1) Stretch:(1.2+dfsg-3) rapid core genome multi-alignment www

  • patman

    Buster:(1.2.2+dfsg-5) rapid alignment of short sequences to large databases www

  • paw

    Buster & Stretch:(1:2.14.04.dfsg.2-9.1) Physics Analysis Workstation - a graphical analysis program www

  • paw++

    Buster & Stretch:(1:2.14.04.dfsg.2-9.1) Physics Analysis Workstation (Lesstif-enhanced version) www

  • paw-common

    Buster & Stretch:(1:2.14.04.dfsg.2-9.1) Physics Analysis Workstation (common files) www

  • paw-demos

    Buster & Stretch:(1:2.14.04.dfsg.2-9.1) Physics Analysis Workstation examples and tests www

  • pbbamtools

    Buster:(0.19.0+dfsg-4+rpi1) Stretch:(0.7.4+ds-1+rpi1) processing Pacific Biosciences binary alignment/map files www

  • pbbarcode

    Buster:(0.8.0-5) Stretch:(0.8.0-4) annotate PacBio sequencing reads with barcode information www

  • pbdagcon

    Buster:(0.3+git20161121.0000000+ds-1.1) Stretch:(0.3+20161121+ds-1) sequence consensus using directed acyclic graphs www

  • pbgenomicconsensus

    Buster:(2.3.2-5) Stretch:(2.1.0-1) Pacific Biosciences variant and consensus caller www

  • pbh5tools

    Buster:(0.8.0+git20170929.58d54ff+dfsg-1) Stretch:(0.8.0+dfsg-5) tools for manipulating Pacific Biosciences HDF5 files www

  • pbhoney

    Buster:(15.8.24+dfsg-3) Stretch:(15.8.24+dfsg-2) genomic structural variation discovery www

  • pbjelly

    Buster:(15.8.24+dfsg-3) Stretch:(15.8.24+dfsg-2) genome assembly upgrading tool www

  • pbsim

    Buster:(1.0.3+git20180330.e014b1d+dfsg-1) Stretch:(1.0.3-2) simulator for PacBio sequencing reads www

  • pcl-tools

    Buster:(1.9.1+dfsg1-10) Stretch:(1.8.0+dfsg1-4+deb9u1) Point Cloud Library - point cloud processing tools www

  • pdb2pqr

    Buster:(2.1.1+dfsg-5) Stretch:(2.1.1+dfsg-2) Preparation of protein structures for electrostatics calculations www

  • pegasus-wms

    Buster:(4.4.0+dfsg-8) Stretch:(4.4.0+dfsg-6) Scientific workflow management system for HTCondor www

  • perlprimer

    Buster:(1.2.4-1) Stretch:(1.2.3-1) Graphical design of primers for PCR www

  • perm

    Buster:(0.4.0-4) Stretch:(0.4.0-2) efficient mapping of short reads with periodic spaced seeds www

  • phast

    Buster:(1.4+dfsg-1) phylogenetic analysis with space/time models www

  • phipack

    Buster:(0.0.20160614-3) Stretch:(0.0.20160614-2) PHI test and other tests of recombination www

  • phy-spread

    Buster & Stretch:(1.0.3-1) analyze and visualize phylogeographic reconstructions www

  • phybin

    Buster:(0.3-3) Stretch:(0.3-1) binning/clustering newick trees by topology www

  • phylip

    Buster:(1:3.697+dfsg-1) Stretch:(1:3.696+dfsg-5) package of programs for inferring phylogenies www

  • phyml

    Buster:(3:3.3.20180621-2) Stretch:(3:3.2.0+dfsg-7) Phylogenetic estimation using Maximum Likelihood www

  • physamp

    Buster:(1.1.0-1) Stretch:(0.2.0-1) sample sequence alignment corresponding to phylogeny www

  • phyutility

    Buster:(2.7.3+dfsg-2) Stretch:(2.7.3-1) simple analyses or modifications on both phylogenetic trees and data matrices www

  • phyx

    Buster:(0.999+ds-1) UNIX-style phylogenetic analyses on trees and sequences www

  • picosat

    Buster & Stretch:(960-1) SAT solver with proof and core support www

  • piler

    Buster:(0~20140707-2) Stretch:(0~20140707-1) genomic repeat analysis www

  • pilon

    Buster:(1.23+dfsg-1) automated genome assembly improvement and variant detection tool www

  • pirs

    Buster:(2.0.2+dfsg-8) Stretch:(2.0.2+dfsg-5.1+b1) Profile based Illumina pair-end Reads Simulator www

  • pirs-examples

    Buster:(2.0.2+dfsg-8) Stretch:(2.0.2+dfsg-5.1) profile basd Illumina pair-end Reads Simulator (example data) www

  • pirs-profiles

    Buster:(2.0.2+dfsg-8) Stretch:(2.0.2+dfsg-5.1) profile basd Illumina pair-end Reads Simulator (profile data) www

  • pkg-r-autopkgtest

    Buster:(20190121) Script for the automatic testing of R packages

  • pktools

    Buster:(2.6.7.6+ds-1+b1) Stretch:(2.6.7-3) GDAL add-on tools to perform useful raster processing www

  • placnet

    Buster:(1.03-3) Stretch:(1.03-2) Plasmid Constellation Network project www

  • planets

    Buster:(0.1.13-19) Stretch:(0.1.13-16) Gravitation simulation of planetary bodies www

  • plasmidseeker

    Buster:(1.0+dfsg-1) identification of known plasmids from whole-genome sequencing reads www

  • plast-example

    Buster:(2.3.2+dfsg-1) Stretch:(2.3.1+dfsg-4) Parallel Local Sequence Alignment Search Tool (example data) www

  • plink

    Buster:(1.07+dfsg-2) Stretch:(1.07-7) whole-genome association analysis toolset www

  • plink1.9

    Buster:(1.90~b6.6-181012-1) Stretch:(1.90~b3.45-170113-1) whole-genome association analysis toolset www

  • pluto-jpl-eph

    Buster:(0.0~git20180228-1.1) command line handling of JPL ephemeres data www

  • pluto-lunar

    Buster:(0.0~git20180825.e34c1d1-1) routines for predictions of positions in solar system www

  • poa

    Buster:(2.0+20060928-7) Stretch:(2.0+20060928-4) Partial Order Alignment for multiple sequence alignment www

  • populations

    Buster:(1.2.33+svn0120106+dfsg-2) Stretch:(1.2.33+svn0120106-2.1) population genetic software www

  • porechop

    Buster:(0.2.4+dfsg-1) adapter trimmer for Oxford Nanopore reads www

  • poretools

    Buster:(0.6.0+dfsg-3) Stretch:(0.6.0+dfsg-2) toolkit for nanopore nucleotide sequencing data www

  • poretools-data

    Buster:(0.6.0+dfsg-3) Stretch:(0.6.0+dfsg-2) toolkit for nanopore nucleotide sequencing data -- sample datasets www

  • pp-popularity-contest

    Buster:(1.0.6-4) Stretch:(1.0.6-2+b3) PredictProtein popularity contest www

  • pprepair

    Buster:(0.0~20170614-dd91a21-3+b1) Stretch:(0.0~20160321-87ffae5-1+b3) planar partition repair tool www

  • praat

    Buster:(6.0.32-1) Stretch:(6.0.23-1) program for speech analysis and synthesis www

  • prank

    Buster:(0.0.170427+dfsg-2) Stretch:(0.0.150803-2) Probabilistic Alignment Kit for DNA, codon and amino-acid sequences www

  • predictnls

    Buster:(1.0.20-5) Stretch:(1.0.20-3) prediction and analysis of protein nuclear localization signals www

  • predictprotein

    Buster:(1.1.08-1) Stretch:(1.1.07-2) suite of protein sequence analysis tools www

  • prepair

    Buster:(0.7.1-3+b1) Stretch:(0.7-6+b4) polygon repair tool www

  • prepair-data

    Buster:(0.7.1-3) Stretch:(0.7-6) polygon repair tool -- example data www

  • prime-phylo

    Buster:(1.0.11-7) Stretch:(1.0.11-4+b1) bayesian estimation of gene trees taking the species tree into account www

  • primer3

    Buster:(2.4.0-2) Stretch:(2.3.7-3) tool to design flanking oligo nucleotides for DNA amplification www

  • primer3-examples

    Buster:(2.4.0-2) Stretch:(2.3.7-3) tool to design flanking oligo nucleotides for DNA amplification (examples) www

  • proalign

    Buster:(0.603-4) Stretch:(0.603-2) Probabilistic multiple alignment program www

  • probabel

    Buster:(0.5.0+dfsg-3) Stretch:(0.4.5-3) Toolset for Genome-Wide Association Analysis www

  • probabel-examples

    Buster:(0.5.0+dfsg-3) Stretch:(0.4.5-3) Example files for ProbABEL www

  • probalign

    Buster:(1.4-8) Stretch:(1.4-5) multiple sequence alignment using partition function posterior probabilities www

  • probcons

    Buster:(1.12-12) Stretch:(1.12-11) PROBabilistic CONSistency-based multiple sequence alignment www

  • probcons-extra

    Buster:(1.12-12) Stretch:(1.12-11) Extra programs from the probcons package www

  • proda

    Buster:(1.0-12) Stretch:(1.0-10) multiple alignment of protein sequences www

  • prodigal

    Buster:(1:2.6.3-4) Stretch:(1:2.6.3-1) Microbial (bacterial and archaeal) gene finding program www

  • profbval

    Buster:(1.0.22-6) Stretch:(1.0.22-4) predictor of flexible/rigid protein residues from sequence www

  • profisis

    Buster:(1.0.11-5) Stretch:(1.0.11-3) prediction of protein-protein interaction sites from sequence www

  • profnet-bval

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profbval www

  • profnet-chop

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profchop www

  • profnet-con

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profcon www

  • profnet-isis

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profisis www

  • profnet-md

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for metadisorder www

  • profnet-norsnet

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for norsnet www

  • profnet-prof

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profacc www

  • profnet-snapfun

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for snapfun www

  • profphd

    Buster:(1.0.42-3) Stretch:(1.0.42-1) secondary structure and solvent accessibility predictor www

  • profphd-net

    Buster:(1.0.22-6) Stretch:(1.0.22-4) neural network architecture for profphd www

  • profphd-utils

    Buster:(1.0.10-5) Stretch:(1.0.10-3) profphd helper utilities convert_seq and filter_hssp www

  • proftmb

    Buster:(1.1.12-8) Stretch:(1.1.12-6) per-residue prediction of bacterial transmembrane beta barrels www

  • progressivemauve

    Buster:(1.2.0+4713+dfsg-4) Stretch:(1.2.0+4713-2) multiple genome alignment algorithms www

  • proj-bin

    Buster:(5.2.0-1) Stretch:(4.9.3-1) Cartographic projection library (tools) www

  • proj-rdnap

    Buster:(2008-8) Stretch:(2008-6) RDNAP grid correction files for PROJ www

  • prooftree

    Buster:(0.13-1+b28) Stretch:(0.13-1) proof-tree visualization for Proof General www

  • proteinortho

    Buster:(5.16.b+dfsg-1) Stretch:(5.15+dfsg-1) Detection of (Co-)orthologs in large-scale protein analysis www

  • prottest

    Buster:(3.4.2+dfsg-3) Stretch:(3.4.2+dfsg-2) selection of best-fit models of protein evolution www

  • pscan-chip

    Buster:(1.1-2) ChIP-based identifcation of TF binding sites www

  • pscan-chip-data

    Buster:(1.1-2) auxiliary data for PScan-ChIP www

  • pscan-tfbs

    Buster:(1.2.2-3) search for transcription factor binding sites www

  • psfex

    Buster:(3.17.1+dfsg-5) Stretch:(3.17.1+dfsg-3+b1) Point Spread Function model extractor www

  • psi3

    Buster & Stretch:(3.4.0-6) Quantum Chemical Program Suite www

  • psi4

    Buster:(1:1.2.1-2) Stretch:(1:1.0-1+b1) Quantum Chemical Program Suite www

  • psi4-data

    Buster:(1:1.2.1-2) Stretch:(1:1.0-1) Quantum Chemical Program Suite (data files) www

  • psychtoolbox-3-common

    Buster:(3.0.15.20190207.dfsg1-1) Stretch:(3.0.14.20170103+git6-g605ff5c.dfsg1-1) toolbox for vision research -- arch/interpreter independent part www

  • psychtoolbox-3-lib

    Buster:(3.0.15.20190207.dfsg1-1) Stretch:(3.0.14.20170103+git6-g605ff5c.dfsg1-1) toolbox for vision research -- arch-specific parts www

  • purify

    Buster:(2.0.0-4+b2) Stretch:(2.0.0-1) Collection of routines for radio interferometric imaging www

  • pyfai

    Buster:(0.17.0+dfsg1-3) Stretch:(0.13.0+dfsg-1) Fast Azimuthal Integration scripts www

  • pyformex

    Buster & Stretch:(0.8.6-4) program to create 3D geometry from Python scripts. www

  • pyformex-lib

    Buster:(0.8.6-4+b3) Stretch:(0.8.6-4+b1) program to create 3D geometry from Python scripts. www

  • pyfr

    Buster:(1.5.0-3) Stretch:(1.5.0-1) flux reconstruction in Python www

  • pymca

    Buster:(5.4.3+dfsg-1) Stretch:(5.1.3+dfsg-1) Applications and toolkit for X-ray fluorescence analysis -- scripts www

  • pymca-data

    Buster:(5.4.3+dfsg-1) Stretch:(5.1.3+dfsg-1) Architecture independent data files for PyMca www

  • pymoctool

    Buster:(0.5.0-4) Stretch:(0.4.2-1) Python Multi-Order Coverage maps tool for Virtual Observatory www

  • pymol

    Buster:(2.2.0+dfsg-4) Stretch:(1.8.4.0+dfsg-1) Molecular Graphics System www

  • pymol-data

    Buster:(2.2.0+dfsg-4) Stretch:(1.8.4.0+dfsg-1) data files for PyMOL www

  • pysatellites

    Buster:(2.5-1) Stretch:(2.4-2) simulates the launching of satellites

  • pythia8-data

    Buster & Stretch:(8.1.86-1.2) PYTHIA8 data files www

  • python-drizzle-testdata

    Buster:(1.12-2) Stretch:(1.3-2) Dithered image combination for Python (Test data) www

  • python-expyriment

    Buster:(0.7.0+git34-g55a4e7e-3.3) Stretch:(0.7.0+git34-g55a4e7e-3.2) Python library for cognitive and neuroscientific experiments www

  • python-pybigwig

    Buster:(0.3.12-1) Stretch:(0.3.2-1) Python 2 module for quick access to bigBed and bigWig files www

  • python-pynlpl

    Buster & Stretch:(1.1.2-1) PyNLPl is a library for Natural Language Processing (Python 2 version) www

  • python-pyzolib

    Buster & Stretch:(0.3.4-1) Utilities for the Pyzo environment (Python 2) www

  • python3-airr

    Buster:(1.2.1-2) Data Representation Standard library for antibody and TCR sequences www

  • python3-amp

    Buster:(0.6.1-1) Atomistic Machine-learning Package (python 3) www

  • python3-bcbio

    Buster:(1.1.2-3) library for analysing high-throughput sequencing data www

  • python3-fitbitscraper

    Buster & Stretch:(0.1-1) Python library for scraping the FitBit website for data www

  • python3-gffutils

    Buster:(0.9-1) Work with GFF and GTF files in a flexible database framework www

  • python3-keras

    Buster:(2.2.4-1) deep learning framework running on Theano or TensorFlow www

  • python3-morse-simulator

    Buster:(1.4-5) Stretch:(1.4-2+b3) Multi-OpenRobot Simulation Engine www

  • python3-pybel

    Buster:(0.12.1-1) Biological Expression Language www

  • python3-pybigwig

    Buster:(0.3.12-1) Stretch:(0.3.2-1) Python 3 module for quick access to bigBed and bigWig files www

  • python3-pynlpl

    Buster & Stretch:(1.1.2-1) PyNLPl is a library for Natural Language Processing (Python 3 version) www

  • python3-pyzolib

    Buster & Stretch:(0.3.4-1) Utilities for the Pyzo environment (Python 3) www

  • pyzo

    Buster:(4.4.3-1.2) Stretch:(4.3.1-1+deb9u1) interactive editor for scientific Python www
  • Back to top

  • Q

  • qcumber

    Buster:(1.0.14+dfsg-1) quality control of genomic sequences www

  • qfits-tools

    Buster & Stretch:(6.2.0-8) FITS manipulation tools www

  • qfitsview

    Buster:(3.3+p1+dfsg-2+b1) Stretch:(3.3+p1+dfsg-2) FITS file viewer based on DPUSER www

  • qgis

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) Geographic Information System (GIS) www

  • qgis-api-doc

    Buster:(2.18.28+dfsg-2) Stretch:(2.14.11+dfsg-3+deb9u1) QGIS API documentation www

  • qgis-common

    Buster:(2.18.28+dfsg-2) Stretch:(2.14.11+dfsg-3+deb9u1) QGIS - architecture-independent data www

  • qgis-plugin-grass

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) GRASS plugin for QGIS www

  • qgis-plugin-grass-common

    Buster:(2.18.28+dfsg-2) Stretch:(2.14.11+dfsg-3+deb9u1) GRASS plugin for QGIS - architecture-independent data www

  • qgis-provider-grass

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) GRASS provider for QGIS www

  • qgis-providers

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) collection of data providers to QGIS www

  • qgis-providers-common

    Buster:(2.18.28+dfsg-2) Stretch:(2.14.11+dfsg-3+deb9u1) collection of data providers to QGIS - architecture-independent files www

  • qgis-server

    Buster:(2.18.28+dfsg-2+b1) Stretch:(2.14.11+dfsg-3+deb9u1) QGIS server providing various OGC services www

  • qiime

    Buster:(1.8.0+dfsg-4+b15) Stretch:(1.8.0+dfsg-4+b3) Quantitative Insights Into Microbial Ecology www

  • qiime-data

    Buster & Stretch:(1.8.0+dfsg-4) Quantitative Insights Into Microbial Ecology (supporting data) www

  • qmc

    Buster & Stretch:(0.94-3.1) Quine McClusky Simplification Tool

  • qrisk2

    Buster:(0.1.20150729-4) Stretch:(0.1.20150729-2) cardiovascular disease risk calculator www

  • qthid-fcd-controller

    Buster & Stretch:(4.1-3) Funcube Dongle controller www

  • qtltools

    Buster:(1.1+dfsg-3) Stretch:(1.1+dfsg-1) Tool set for molecular QTL discovery and analysis www

  • quantum-espresso

    Buster:(6.3-4) Stretch:(6.0-3) Electronic-Structure and Ab-Initio Molecular Dynamics Suite www

  • quantum-espresso-data

    Buster:(6.3-4) Stretch:(6.0-3) Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation) www

  • quitcount

    Buster:(3.1.4-1) Stretch:(3.1.3-3) Small tool which may help yourself quit smoking www

  • qutemol

    Buster:(0.4.1~cvs20081111-12) Stretch:(0.4.1~cvs20081111-6+rpi1) interactive visualization of macromolecules www
  • Back to top

  • R

  • r-cran-sdmtools

    Buster:(1.1-221-1) Species Distribution Modelling Tools www

  • r-cran-shazam

    Buster:(0.1.11-1) Immunoglobulin Somatic Hypermutation Analysis www

  • r-cran-tigger

    Buster:(0.3.1-1) Infers new Immunoglobulin alleles from Rep-Seq Data www

  • raccoon

    Buster & Stretch:(1.0b-2) preparation of in silico drug screening projects www

  • radiant

    Buster:(2.7+dfsg-2) explore hierarchical metagenomic data with zoomable pie charts www

  • rambo-k

    Buster:(1.21+dfsg-2) Stretch:(1.21+dfsg-1) Read Assignment Method Based On K-mers www

  • rampler

    Buster:(1.1.0-1) module for sampling genomic sequences www

  • rapmap-dev

    Buster:(0.12.0+dfsg-3) rapmap - rapid sensitive and accurate DNA read mapping (some headers) www

  • rapmap-example-data

    Buster:(0.12.0+dfsg-3) example data for rapmap - rapid sensitive and accurate DNA read mapping www

  • rasmol

    Buster:(2.7.6.0-1) Stretch:(2.7.5.2-2) visualization of biological macromolecules www

  • raster3d

    Buster:(3.0-3-5+b7) Stretch:(3.0-3-2+b24) tools for generating images of proteins or other molecules www

  • rate4site

    Buster:(3.0.0-6) Stretch:(3.0.0-4) detector of conserved amino-acid sites www

  • rawtran

    Buster:(1.1-1) Stretch:(0.3.8-2+b1) RAW photo to FITS converter www

  • ray

    Buster:(2.3.1-6) Stretch:(2.3.1-4+b1) de novo genome assemblies of next-gen sequencing data www

  • ray-extra

    Buster:(2.3.1-6) Stretch:(2.3.1-4) Scripts and XSL sheets for post-processing for ray www

  • rdkit-data

    Buster:(201809.1+dfsg-6) Stretch:(201603.5-2) Collection of cheminformatics and machine-learning software (data files) www

  • rdp-classifier

    Buster:(2.10.2-4) Stretch:(2.10.2-1) extensible sequence classifier for fungal lsu, bacterial and archaeal 16s www

  • readseq

    Buster:(1-13) Stretch:(1-11) Conversion between sequence formats www

  • reapr

    Buster:(1.0.18+dfsg-4) Stretch:(1.0.18+dfsg-3) universal tool for genome assembly evaluation www

  • refmac-dictionary

    Buster:(5.41-1) dictionary for macromolecular refinement and model building www

  • repeatmasker-recon

    Buster:(1.08-4) Stretch:(1.08-3) finds repeat families from biological sequences www

  • reprof

    Buster:(1.0.1-6) Stretch:(1.0.1-4) protein secondary structure and accessibility predictor www

  • rivet

    Buster:(1.8.3-3) Stretch:(1.8.3-2) Robust Independent Validation of Experiment and Theory www

  • rivet-plugins

    Buster:(1.8.3-3+b1) Analysis plugins of Rivet www

  • rivet-plugins-data

    Buster:(1.8.3-3) Stretch:(1.8.3-2) Data files of Rivet analysis plugins www

  • rivet-plugins-dev

    Buster:(1.8.3-3) Stretch:(1.8.3-2) Template generator of Rivet analysis plugin www

  • rnahybrid

    Buster:(2.1.2-5) Stretch:(2.1.2-1) Fast and effective prediction of microRNA/target duplexes www

  • roary

    Buster:(3.12.0+dfsg-2) Stretch:(3.8.0+dfsg-1) high speed stand alone pan genome pipeline www

  • roguenarok

    Buster:(1.0-3) versatile and scalable algorithm for rogue taxon identification www

  • rsem

    Buster:(1.3.1+dfsg-1) Stretch:(1.2.31+dfsg-1) RNA-Seq by Expectation-Maximization www

  • rtax

    Buster:(0.984-6) Stretch:(0.984-5) Classification of sequence reads of 16S ribosomal RNA gene www

  • ruby-rgfa

    Buster:(1.3.1+dfsg-1) Stretch:(1.3.1-1) parse, edit and write GFA format graphs in Ruby www

  • runcircos-gui

    Buster:(0.0+git20180828.97703b9-1+b5) GUI tool to run circos www
  • Back to top

  • S

  • sac2mseed

    Buster:(1.12+ds1-3) Convert SAC waveform data to MiniSEED www

  • saga

    Buster:(2.3.1+dfsg-4+b1) Stretch:(2.3.1+dfsg-3) System for Automated Geoscientific Analyses www

  • saga-common

    Buster:(2.3.1+dfsg-4) Stretch:(2.3.1+dfsg-3) SAGA GIS architecture independent files www

  • saint

    Buster:(2.5.0+dfsg-3) Stretch:(2.5.0+dfsg-2) Significance Analysis of INTeractome www

  • salmid

    Buster:(0.1.23-1) rapid Kmer based Salmonella identifier from sequence data www

  • samblaster

    Buster:(0.1.24-2) marks duplicates, extracts discordant/split reads www

  • samtools

    Buster:(1.9-4) Stretch:(1.3.1-3) processing sequence alignments in SAM, BAM and CRAM formats www

  • samtools-test

    Buster:(1.9-4) Stretch:(1.3.1-3) test files for the samtools package www

  • saods9

    Buster:(8.0.1+repack-2) Stretch:(7.5+repack1-2) Image display tool for astronomy www

  • sasview

    Buster:(4.2.1-1) Small Angle Scattering Analysis suite www

  • sat4j

    Buster:(2.3.5-0.3) Stretch:(2.3.5-0.2) Efficient library of SAT solvers in Java www

  • savi

    Buster:(1.5.1-3) Stretch:(1.5.0a-1) satellite constellation visualisation www

  • sbmltoolbox

    Buster:(4.1.0-4) Stretch:(4.1.0-3) libsbml toolbox for octave and matlab www

  • scamp

    Buster:(2.0.4+dfsg-1+b1) Stretch:(2.0.4-3) Compute astrometric and photometric solutions www

  • science-astronomy

    Buster:(1.10) Stretch:(1.7) Debian Science Astronomy transitional package www

  • science-astronomy-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Astronomy-dev transitional package www

  • science-biology

    Buster:(1.10) Stretch:(1.7) Debian Science Biology packages www

  • science-chemistry

    Buster:(1.10) Stretch:(1.7) Debian Science Chemistry packages www

  • science-config

    Buster:(1.10) Stretch:(1.7) Debian Science Project config package www

  • science-dataacquisition

    Buster:(1.10) Stretch:(1.7) Debian Science data acquisition packages www

  • science-dataacquisition-dev

    Buster:(1.10) Stretch:(1.7) Debian Science data acquisition development packages www

  • science-distributedcomputing

    Buster:(1.10) Stretch:(1.7) Debian Science Distributed Computing packages www

  • science-economics

    Buster:(1.10) Stretch:(1.7) Debian Science Economics packages www

  • science-electronics

    Buster:(1.10) Stretch:(1.7) Debian Science Electronics transitional package www

  • science-electrophysiology

    Buster:(1.10) Stretch:(1.7) Debian Science packages for Electrophysiology www

  • science-engineering

    Buster:(1.10) Stretch:(1.7) Debian Science Engineering packages www

  • science-engineering-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Engineering-dev packages www

  • science-financial

    Buster:(1.10) Stretch:(1.7) Debian Science financial engineering and computational finance www

  • science-geography

    Buster:(1.10) Stretch:(1.7) Debian Science Geography packages www

  • science-geometry

    Buster:(1.10) Stretch:(1.7) Debian Science geometry packages www

  • science-highenergy-physics

    Buster:(1.10) Stretch:(1.7) Debian Science High Energy Physics packages www

  • science-highenergy-physics-dev

    Buster:(1.10) Stretch:(1.7) Debian Science High Energy Physics development packages www

  • science-imageanalysis

    Buster:(1.10) Stretch:(1.7) Debian Science image analysis packages www

  • science-linguistics

    Buster:(1.10) Stretch:(1.7) Debian Science Linguistics packages www

  • science-logic

    Buster:(1.10) Stretch:(1.7) Debian Science Logic packages www

  • science-machine-learning

    Buster:(1.10) Stretch:(1.7) Debian Science Machine Learning packages www

  • science-mathematics

    Buster:(1.10) Stretch:(1.7) Debian Science Mathematics packages www

  • science-mathematics-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Mathematics-dev packages www

  • science-meteorology

    Buster:(1.10) Stretch:(1.7) Debian Science Meteorology packages www

  • science-meteorology-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Meteorology-dev packages www

  • science-nanoscale-physics

    Buster:(1.10) Stretch:(1.7) Debian Science Nanoscale Physics packages www

  • science-nanoscale-physics-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Nanoscale Physics development packages www

  • science-neuroscience-cognitive

    Buster:(1.10) Stretch:(1.7) Debian Science packages for Cognitive Neuroscience www

  • science-neuroscience-modeling

    Buster:(1.10) Stretch:(1.7) Debian Science packages for modeling of neural systems www

  • science-numericalcomputation

    Buster:(1.10) Stretch:(1.7) Debian Science Numerical Computation packages www

  • science-physics

    Buster:(1.10) Stretch:(1.7) Debian Science Physics packages www

  • science-physics-dev

    Buster:(1.10) Stretch:(1.7) Debian Science Physics-dev packages www

  • science-presentation

    Buster:(1.10) Stretch:(1.7) Debian Science generic tools for presentations www

  • science-psychophysics

    Buster:(1.10) Stretch:(1.7) Debian Science packages for Psychophysics www

  • science-robotics

    Buster:(1.10) Stretch:(1.7) Debian Robotics packages www

  • science-robotics-dev

    Buster:(1.10) Stretch:(1.7) Debian Robotics development packages www

  • science-simulations

    Buster:(1.10) Stretch:(1.7) Debian Science Simulation packages www

  • science-statistics

    Buster:(1.10) Stretch:(1.7) Debian Science Statistics packages www

  • science-tasks

    Buster:(1.10) Stretch:(1.7) Debian Science tasks for tasksel www

  • science-typesetting

    Buster:(1.10) Stretch:(1.7) Debian Science typesetting packages www

  • science-viewing

    Buster:(1.10) Stretch:(1.7) Debian Science data visualisation packages www

  • science-viewing-dev

    Buster:(1.10) Stretch:(1.7) Debian Science development of visualisation applications www

  • scoary

    Buster:(1.6.16-1) pangenome-wide association studies www

  • scram

    Buster:(0.16.2-1) Stretch:(0.11.5-1) Probabilistic Risk Analysis Tool www

  • scram-gui

    Buster:(0.16.2-1) SCRAM GUI front-end www

  • scrm

    Buster:(1.7.3-1) Stretch:(1.7.2-1) simulator of evolution of genetic sequences www

  • sctk

    Buster & Stretch:(2.4.10-20151007-1312Z+dfsg2-3) speech recognition scoring toolkit www

  • scythe

    Buster:(0.994+git20141017.20d3cff-1) Stretch:(0.994-4) Bayesian adaptor trimmer for sequencing reads www

  • sdaps

    Buster:(1.2.1-2) scripts for data acquisition with paper-based surveys www

  • seaview

    Buster:(1:4.7-1) Stretch:(1:4.6.1.2-2) Multiplatform interface for sequence alignment and phylogeny www

  • seer

    Buster:(1.1.4-2+b1) Stretch:(1.1.2-3) genomic sequence element (kmer) enrichment analysis www

  • seesat5

    Buster & Stretch:(0.90.10-1.1) a satellite location program

  • segemehl

    Buster:(0.3.4-1) short read mapping with gaps www

  • segyio-bin

    Buster:(1.8.3-1) SEG-Y read/write library for seismic processing (shell utilities) www

  • seqan-apps

    Buster:(2.4.0+dfsg-11) C++ library for the analysis of biological sequences www

  • seqmagick

    Buster:(0.7.0-1) imagemagick-like frontend to Biopython SeqIO www

  • seqprep

    Buster:(1.3.2-3) Stretch:(1.3.2-1) stripping adaptors and/or merging paired reads of DNA sequences with overlap www

  • seqprep-data

    Buster:(1.3.2-3) Stretch:(1.3.2-1) example data set for seqprep - only used for testing www

  • seqsero

    Buster:(1.0.1+dfsg-1) Salmonella serotyping from genome sequencing data www

  • seqtk

    Buster:(1.3-1) Stretch:(1.2-1) Fast and lightweight tool for processing sequences in the FASTA or FASTQ format www

  • sextractor

    Buster:(2.19.5+dfsg-6) Stretch:(2.19.5+dfsg-4) Source extractor for astronomical images www

  • sga

    Buster:(0.10.15-4) Stretch:(0.10.15-2) de novo genome assembler that uses string graphs www

  • shelxle

    Buster & Stretch:(1.0.816-1) graphical user interface for SHELXL www

  • shogun-cmdline-static

    Buster:(3.2.0-8+b1) Stretch:(3.2.0-7.5~rpistretch) Large Scale Machine Learning Toolbox www

  • sibsim4

    Buster:(0.20-4) Stretch:(0.20-2) align expressed RNA sequences on a DNA template www

  • sickle

    Buster:(1.33+git20150314.f3d6ae3-1) Stretch:(1.33-1) windowed adaptive trimming tool for FASTQ files using quality www

  • sigma-align

    Buster:(1.1.3-6) Stretch:(1.1.3-4) Simple greedy multiple alignment of non-coding DNA sequences www

  • sigviewer

    Buster:(0.6.2-2) Stretch:(0.5.1+svn556-5) GUI viewer for biosignals such as EEG, EMG, and ECG www

  • silx

    Buster:(0.9.0+dfsg-3+deb10u1) Toolbox for X-Ray data analysis - Executables www

  • sim4

    Buster:(0.0.20121010-5) Stretch:(0.0.20121010-4) tool for aligning cDNA and genomic DNA www

  • sim4db

    Buster:(0~20150903+r2013-6+b3) Stretch:(0~20150903+r2013-3+b2) batch spliced alignment of cDNA sequences to a target genome www

  • simgrid-java

    Buster:(3.21+dfsg-4+b1) Stretch:(3.14.159-2) Java bindings for the SimGrid Toolkit www

  • siril

    Buster:(0.9.10-2) Stretch:(0.9.5-2) astronomical image processing tool www

  • sixpack

    Buster & Stretch:(1:0.68-1) full-featured package for XAS analysis www

  • skycat

    Buster:(3.1.2+starlink1~b+dfsg-5+b2) Stretch:(3.1.2+starlink1~b+dfsg-2+b3) Image visualization and access to catalogs and data for astronomy www

  • slang-xfig

    Buster:(0.2.0~.117-2) Stretch:(0.2.0~.35-2) produce plots and drawings through Xfig's fig2dev in S-Lang www

  • sleepyhead

    Buster:(1.0.0-beta-2+dfsg-6) Stretch:(1.0.0-beta-2+dfsg-2) Sleep tracking software with a focus on monitoring CPAP treatment www

  • smalr

    Buster:(1.1+dfsg-2) interrogation of the methylation status of nucleotide sequencing reads www

  • smalt

    Buster:(0.7.6-8) Stretch:(0.7.6-6) Sequence Mapping and Alignment Tool www

  • smalt-examples

    Buster:(0.7.6-8) Stretch:(0.7.6-6) Sequence Mapping and Alignment Tool (examples) www

  • smithwaterman

    Buster:(0.0+git20160702.2610e25-7) Stretch:(0.0+20160702-1) determine similar regions between two strings or genomic sequences www

  • smrtanalysis

    Buster & Stretch:(0~20161126) software suite for single molecule, real-time sequencing www

  • snakemake

    Buster:(5.4.0-1) Stretch:(3.10.0-1) pythonic workflow management system www

  • snap

    Buster:(2013-11-29-9) Stretch:(2013-11-29-6) location of genes from DNA sequence with hidden markov model www

  • sniffles

    Buster:(1.0.11+ds-1) Stretch:(1.0.2+ds-1) structural variation caller using third-generation sequencing www

  • snp-sites

    Buster:(2.4.1-1) Stretch:(2.3.2-1) Binary code for the package snp-sites www

  • snpomatic

    Buster:(1.0-4) Stretch:(1.0-3) fast, stringent short-read mapping software www

  • soapsnp

    Buster:(1.03-3) resequencing utility that can assemble consensus sequence of genomes www

  • solvate-doc

    Buster:(1.0-2) Documentation for solvate www

  • spaced

    Buster:(1.2.0-201605+dfsg-1) Stretch:(1.0.2+dfsg-1) alignment-free sequence comparison using spaced words www

  • spass

    Buster & Stretch:(3.7-4) automated theorem prover for first-order logic with equality www

  • spatialite-bin

    Buster:(4.3.0-2+b3) Stretch:(4.3.0-2+b2) Geospatial extension for SQLite - tools www

  • spd

    Buster & Stretch:(1.3.0-1) Synchrotron image corrections and azimuthal integration www

  • splash

    Buster:(2.8.0-1) Stretch:(2.6.0-2) Visualisation tool for Smoothed Particle Hydrodynamics simulation www

  • sprai

    Buster:(0.9.9.23+dfsg-2) Stretch:(0.9.9.22+dfsg-1) single-pass sequencing read accuracy improver www

  • spread-phy

    Buster:(1.0.7+dfsg-2) Stretch:(1.0.7+dfsg-1) analyze and visualize phylogeographic reconstructions www

  • squizz

    Buster:(0.99d+dfsg-2) Stretch:(0.99c+dfsg-1) Converter for genetic sequences and alignments www

  • ssake

    Buster:(4.0-2) Stretch:(3.8.4-1) genomics application for assembling millions of very short DNA sequences www

  • ssake-examples

    Buster:(4.0-2) Stretch:(3.8.4-1) example data for SSAKE, a genomic assembler of short reads www

  • sspace

    Buster:(2.1.1+dfsg-4) Stretch:(2.1.1+dfsg-2) scaffolding pre-assembled contigs after extension www

  • stacks

    Buster:(2.2+dfsg-1+b1) Stretch:(1.44-2) pipeline for building loci from short-read DNA sequences www

  • stacks-web

    Buster:(2.2+dfsg-1) Stretch:(1.44-2) web interface for displaying loci from short-read sequences www

  • staden

    Buster:(2.0.0+b11-4) Stretch:(2.0.0+b11-2) DNA sequence assembly (Gap4/Gap5), editing and analysis tools www

  • staden-common

    Buster:(2.0.0+b11-4) Stretch:(2.0.0+b11-2) Architecture independent files for Staden www

  • staden-io-lib-examples

    Buster:(1.14.11-6) Stretch:(1.14.8-2) programs for manipulating DNA sequencing files (usage examples) www

  • staden-io-lib-utils

    Buster:(1.14.11-6) Stretch:(1.14.8-2) programs for manipulating DNA sequencing files www

  • stardata-common

    Buster & Stretch:(0.8) Common framework to manage astronomy packages www

  • starplot

    Buster:(0.95.5-8.3) Stretch:(0.95.5-8.2+deb9u1) 3-dimensional perspective star map viewer www

  • starpu-examples

    Buster:(1.2.6+dfsg-7) Stretch:(1.2.0+dfsg-4) Task scheduler for heterogeneous multicore machines - exs www

  • stellarium

    Buster:(0.18.3-1) Stretch:(0.15.0-1) real-time photo-realistic sky generator www

  • stellarium-data

    Buster:(0.18.3-1) Stretch:(0.15.0-1) Stellarium data files www

  • step

    Buster:(4:18.08.1-1+b1) Stretch:(4:16.08.0-1) interactive physical simulator for KDE www

  • stiff

    Buster:(2.4.0-3) Stretch:(2.4.0-2) convert scientific FITS images to the TIFF format www

  • stilts

    Buster:(3.1.5-1) Starlink Tables Infrastructure Library Tool Set www

  • stimfit

    Buster:(0.15.8-1+b1) Stretch:(0.15.3-1+rpi1) Program for viewing and analyzing electrophysiological data www

  • subread

    Buster:(1.6.3+dfsg-1) Stretch:(1.5.1+dfsg-4) toolkit for processing next-gen sequencing data www

  • subread-data

    Buster:(1.6.3+dfsg-1) Stretch:(1.5.1+dfsg-4) data files for subread package www

  • suitename

    Buster:(0.3.070628-2) Stretch:(0.3.070628-1) categorize each suite in an RNA backbone www

  • sumaclust

    Buster:(1.0.31-2) Stretch:(1.0.20-1) fast and exact clustering of genomic sequences www

  • sumatra

    Buster:(1.0.31-2) Stretch:(1.0.20-1) fast and exact comparison and clustering of sequences www

  • sumo

    Buster:(1.1.0+dfsg1-1) Stretch:(0.28.0+dfsg1-1) Simulation of Urban MObility (SUMO) www

  • surankco

    Buster:(0.0.r5+dfsg-2) Stretch:(0.0.r5+dfsg-1) Supervised Ranking of Contigs in de novo Assemblies www

  • survex

    Buster:(1.2.38-1) Stretch:(1.2.30-1) cave surveying and mapping software www

  • survex-aven

    Buster:(1.2.38-1) Stretch:(1.2.30-1) sophisticated cave survey viewer for Survex www

  • swarp

    Buster:(2.38.0+dfsg-4) Stretch:(2.38.0+dfsg-3) Resample and co-add together FITS images www

  • swe-basic-data

    Buster & Stretch:(1.80.00.0002-1) basic data files for the libswe package www

  • swe-standard-data

    Buster & Stretch:(00004-1) standard data for the Swiss Ephemeris www

  • sweed

    Buster:(3.2.1+dfsg-1) assessment of SNPs for their evolutionary advantage www

  • syrthes

    Buster:(4.3.0-dfsg1-3) Stretch:(4.3.0-dfsg1-2) Transient thermal simulations in complex solid geometries www

  • syrthes-gui

    Buster:(4.3.0-dfsg1-3) Stretch:(4.3.0-dfsg1-2) Transient thermal simulations in complex solid geometries - GUI www

  • syrthes-tests

    Buster:(4.3.0-dfsg1-3) Stretch:(4.3.0-dfsg1-2) Test cases for SYRTHES www

  • syrthes-tools

    Buster:(4.3.0-dfsg1-3) Stretch:(4.3.0-dfsg1-2) Transient thermal simulations in complex solid geometries - tools www
  • Back to top

  • T

  • t-coffee

    Buster:(12.00.7fb08c2-4) Stretch:(11.00.8cbe486-5) Multiple Sequence Alignment www

  • t-coffee-examples

    Buster:(12.00.7fb08c2-4) Stretch:(11.00.8cbe486-5) annotated examples for the use of T-Coffee www

  • tabix

    Buster:(1.9-11) Stretch:(1.3.2-2+rpi1) generic indexer for TAB-delimited genome position files www

  • tandem-mass

    Buster:(1:201702011-1) Stretch:(1:20151215-4) mass spectrometry software for protein identification www

  • tantan

    Buster:(22-1) Stretch:(13-4) low complexity and tandem repeat masker for biosequences www

  • tcd-utils

    Buster & Stretch:(20061127-2) convert Tide Constituent Database (TCD) files

  • tcliis

    Buster:(8.0.1+repack-2) Tcl IIS protocol package www

  • teem-apps

    Buster:(1.12.0~20160122-2) Stretch:(1.11.0~svn6057-1.1) Tools to process and visualize scientific data and images - command line tools www

  • terraintool

    Buster:(1.13-2) Stretch:(1.12a-1) Generates survex format terrain models from SRTM and ASTER data www

  • therion

    Buster:(5.4.3ds1-6) Stretch:(5.3.16-10+b2) Cave surveying - 2D and 3D drawing software www

  • therion-viewer

    Buster:(5.4.3ds1-6) Stretch:(5.3.16-10+b2) Cave surveying - 3D viewer for therion models www

  • theseus

    Buster:(3.3.0-8) Stretch:(3.3.0-5) superimpose macromolecules using maximum likelihood www

  • theseus-examples

    Buster:(3.3.0-8) Stretch:(3.3.0-5) superimpose macromolecules using maximum likelihood (examples) www

  • tigr-glimmer

    Buster:(3.02b-2) Stretch:(3.02b-1) Gene detection in archea and bacteria www

  • timbl

    Buster:(6.4.13-1) Stretch:(6.4.8-1) Tilburg Memory Based Learner www

  • timblserver

    Buster:(1.12-1) Stretch:(1.11-1) Server extensions for Timbl www

  • tksao

    Buster:(8.0.1+repack-2) Stretch:(7.5+repack1-2) Tk widgets for astronomical imaging and data visualization www

  • tm-align

    Buster:(20170708+dfsg-2) Stretch:(20160521+dfsg-2) structural alignment of proteins www

  • tnseq-transit

    Buster:(2.3.4-1) statistical calculations of essentiality of genes or genomic regions www

  • topcat

    Buster:(4.6.2-1) Tool for OPerations on Catalogues And Tables www

  • tophat

    Buster:(2.1.1+dfsg1-2) fast splice junction mapper for RNA-Seq reads www

  • toppred

    Buster:(1.10-7) Stretch:(1.10-4) transmembrane topology prediction www

  • toulbar2

    Buster:(1.0.0+dfsg3-2) Stretch:(0.9.8-1) Exact combinatorial optimization for Graphical Models www

  • toulbar2-doc

    Buster:(1.0.0+dfsg3-2) Exact combinatorial optimization for Graphical Models - documentation www

  • trace2dbest

    Buster:(3.0.1-1) bulk submission of chromatogram data to dbEST www

  • trace2dbest-doc

    Buster:(3.0.1-1) Documentation and sample files for trace2dbest www

  • tracetuner

    Buster:(3.0.6~beta+dfsg-1) interpretation of DNA Sanger sequencing data www

  • transcalc

    Buster & Stretch:(0.14-6) microwave and RF transmission line calculator www

  • transdecoder

    Buster:(5.0.1-2) Stretch:(3.0.1+dfsg-1) find coding regions within RNA transcript sequences www

  • transrate-tools

    Buster:(1.0.0-2) Stretch:(1.0.0-1) helper for transrate www

  • transtermhp

    Buster:(2.09-4) Stretch:(2.09-3) find rho-independent transcription terminators in bacterial genomes www

  • travis

    Buster:(190101-1) Stretch:(161013-1) trajectory analyzer and visualizer www

  • tree-ppuzzle

    Buster:(5.2-11) Stretch:(5.2-8+b2) Parallelized reconstruction of phylogenetic trees by maximum likelihood www

  • tree-puzzle

    Buster:(5.2-11) Stretch:(5.2-8+b2) Reconstruction of phylogenetic trees by maximum likelihood www

  • treeview

    Buster:(1.1.6.4+dfsg1-4) Stretch:(1.1.6.4+dfsg1-2) Java re-implementation of Michael Eisen's TreeView www

  • treeviewx

    Buster:(0.5.1+git20100823.7e4d0e9-1) Stretch:(0.5.1+20100823-4) Displays and prints phylogenetic trees www

  • trimmomatic

    Buster:(0.38+dfsg-1) Stretch:(0.36+dfsg-1) flexible read trimming tool for Illumina NGS data www

  • trinityrnaseq-examples

    Buster:(2.6.6+dfsg-6) Stretch:(2.2.0+dfsg-2) RNA-Seq De novo Assembly common example and testing files www

  • trnascan-se-common

    Buster:(2.0.0-3) detection of transfer RNA genes in genomic sequence (common files) www

  • tunnelx

    Buster:(20170928-2) Stretch:(20160713-3) Cave Survey drawing software www

  • tvc

    Buster:(5.0.3+git20151221.80e144e+dfsg-2) genetic variant caller for Ion Torrent sequencing platforms www

  • twms

    Buster:(0.07z-1) Stretch:(0.05t-4) tiny web map service www
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  • U

  • ubertooth

    Buster:(2018.12.R1-2) Stretch:(2015.09.R2-4) 2.4 GHz wireless development platform for Bluetooth experimentation www

  • ubertooth-firmware

    Buster:(2018.12.R1-2) Stretch:(2015.09.R2-4) Firmware for Ubertooth www

  • ubertooth-firmware-source

    Buster:(2018.12.R1-2) Stretch:(2015.09.R2-4) Source code for the Ubertooth firmware www

  • uc-echo

    Buster:(1.12-11) Stretch:(1.12-9) error correction algorithm designed for short-reads from NGS www

  • ucto

    Buster:(0.14-2) Stretch:(0.9.6-1) Unicode Tokenizer www

  • uctodata

    Buster:(0.8-2) Stretch:(0.4-1) Data files for Ucto www

  • ugene-data

    Buster:(1.31.1+dfsg-1) Stretch:(1.25.0+dfsg-1) required data for UGENE - integrated bioinformatics toolkit www

  • uhd-host

    Buster:(3.13.1.0-3) Stretch:(3.9.5-2) universal hardware driver for Ettus Research products - host apps www

  • unicycler-data

    Buster:(0.4.7+dfsg-2) hybrid assembly pipeline for bacterial genomes (data package) www

  • units-filter

    Buster:(3.9-1) Stretch:(3.7-3) Parser for expressions concerning physical values

  • urg-utils

    Buster & Stretch:(0.8.18-2) utilities for Hokuyo URG/UTM laser range scanners
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  • V

  • v-sim

    Buster:(3.7.2-6) Stretch:(3.7.2-2) Visualize atomic structures www

  • v-sim-common

    Buster:(3.7.2-6) Stretch:(3.7.2-2) Visualize atomic structures (support files) www

  • v-sim-plugins

    Buster:(3.7.2-6) Stretch:(3.7.2-2) Plugins for V_Sim (a 3D visualization package) www

  • varna

    Buster:(3-93+ds-2) Stretch:(3-93+ds-1) Visualization Applet for RNA www

  • vcftools

    Buster:(0.1.16-1) Stretch:(0.1.14+dfsg-4+deb9u1) Collection of tools to work with VCF files www

  • velvet

    Buster:(1.2.10+dfsg1-5) Stretch:(1.2.10+dfsg1-3) Nucleic acid sequence assembler for very short reads www

  • velvet-example

    Buster:(1.2.10+dfsg1-5) Stretch:(1.2.10+dfsg1-3) Example data for the Velvet sequence assembler www

  • velvet-long

    Buster:(1.2.10+dfsg1-5) Stretch:(1.2.10+dfsg1-3) Nucleic acid sequence assembler for very short reads, long version www

  • velvet-tests

    Buster:(1.2.10+dfsg1-5) Stretch:(1.2.10+dfsg1-3) Test data for the Velvet sequence assembler www

  • velvetoptimiser

    Buster:(2.2.6-2) Stretch:(2.2.5-5) automatically optimise Velvet do novo assembly parameters www

  • viewmol

    Buster:(2.4.1-25) Stretch:(2.4.1-24) graphical front end for computational chemistry programs www

  • visp-images-data

    Buster:(3.2.0-1) Stretch:(3.0.0-2) visual servoing library - dataset reference files www

  • vistrails

    Buster & Stretch:(2.2.4-1) Science visualisation workflow toolkit www

  • vmtk

    Buster:(1.3+dfsg-2.3) Stretch:(1.3+dfsg-2.1+deb9u1) the Vascular Modeling Toolkit www

  • voro++

    Buster:(0.4.6+dfsg1-3) library for the computation of the Voronoi diagram www

  • voro++-examples

    Buster:(0.4.6+dfsg1-3) library for the computation of the Voronoi diagram (examples) www

  • voronota

    Buster:(1.19.2352-1) Voronoi diagram-based tool to find atom contacts www

  • votca-csg

    Buster:(1.5-3) Stretch:(1.3.0-3+b1) VOTCA's coarse-graining engine www

  • votca-csg-scripts

    Buster:(1.5-3) Stretch:(1.3.0-3) VOTCA's coarse-graining scripts www

  • votca-csg-tutorials

    Buster:(1.5-3) Stretch:(1.3.0-3) VOTCA's coarse-graining tutorials www

  • vowpal-wabbit

    Buster & Stretch:(7.3-1.1+b1) fast and scalable online machine learning algorithm www

  • voxbo

    Buster:(1.8.5~svn1246-3) Stretch:(1.8.5~svn1246-2) processing, statistical analysis, and display of brain imaging data www
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  • W

  • wcslib-tools

    Buster:(6.2-2) Stretch:(5.16-1) Command line tools utilizing wcslib www

  • wcstools

    Buster:(3.9.5-3) Stretch:(3.9.4-2) Handle the WCS of a FITS image www

  • weightwatcher

    Buster:(1.12+dfsg-1) Stretch:(1.12-1) Combine maps and polygon data for astronomical image processing www

  • weka

    Buster & Stretch:(3.6.14-1) Machine learning algorithms for data mining tasks www

  • wfrog

    Buster & Stretch:(0.8.2+svn973-1) Web-based customizable weather station software www

  • wigeon

    Buster:(20101212+dfsg1-2) Stretch:(20101212+dfsg1-1) reimplementation of the Pintail 16S DNA anomaly detection utility www

  • wise

    Buster:(2.4.1-21) Stretch:(2.4.1-19) comparison of biopolymers, like DNA and protein sequences www

  • worldwind

    Buster & Stretch:(0.5.0-10) 3D Virtual Globe www

  • wsclean

    Buster:(2.6-1+b3) Stretch:(2.2.1-1) Fast generic widefield interferometric imager www

  • wxastrocapture

    Buster:(1.8.1+git20140821+dfsg-2) Stretch:(1.8.1+git20140821+dfsg-1+b1) Windows linuX Astronomy Capture www
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  • X

  • xbs

    Buster & Stretch:(0-10) 3-d models and movies of molecules

  • xcas

    Buster:(1.4.9.69+dfsg1-2) Computer Algebra System - console and graphical calculator www

  • xdrawchem

    Buster:(1:1.10.2.1-2) Stretch:(2.0-6) Chemical structures and reactions editor

  • xflr5

    Buster & Stretch:(6.09.06-2+b1) analysis tool for airfoils www

  • xfoil

    Buster:(6.99.dfsg+1-1) Stretch:(6.99.dfsg-2) program for the design and analysis of subsonic airfoils www

  • xmakemol

    Buster & Stretch:(5.16-9) program for visualizing atomic and molecular systems www

  • xmakemol-gl

    Buster & Stretch:(5.16-9) program for visualizing atomic and molecular systems (OpenGL) www

  • xmds

    Buster & Stretch:(1.6.6-7) eXtensible Multi-Dimensional Simulator www

  • xmds2

    Buster:(2.2.3+dfsg-15) Stretch:(2.2.2+dfsg-3) eXtensible Multi-Dimensional Simulator www

  • xpa-tools

    Buster:(2.1.18-4+rpi1) Stretch:(2.1.18-1) Tools for seamless communication between Unix programs www

  • xplot

    Buster & Stretch:(1.19-9) simple on-screen x-y column data plotter

  • xplot-xplot.org

    Buster:(0.90.7.1-4) Stretch:(0.90.7.1-3) fast tool to graph and visualize lots of data www

  • xppaut

    Buster & Stretch:(6.11b+1.dfsg-1) Phase Plane Plus Auto: Solves many kinds of equations www

  • xtide

    Buster & Stretch:(2.13.2-1+b1) provides tide and current predictions www

  • xtide-coastline

    Buster & Stretch:(20020202-1) coastline data for xtide

  • xtide-data

    Buster & Stretch:(20100529-1) Harmonics data for xtide www

  • xtide-data-nonfree

    Buster & Stretch:(20100529-1) Harmonics data for xtide (Canada, Netherlands, Germany and UK) www

  • xyscan

    Buster:(4.30-2+b2) Stretch:(3.33-1) data thief for scientists www
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  • Y

  • yagv

    Buster:(0.4~20130422.r5bd15ed+dfsg-4) Stretch:(0.4~20130422.r5bd15ed+dfsg-1) yet another G-code viewer www

  • yaha

    Buster:(0.1.83-1) find split-read mappings on single-end queries www

  • yale

    Buster & Stretch:(5.0.95-2) stellar data set from the Yale Bright Star Catalog www

  • yorick

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6+b3) interpreted language and scientific graphics www

  • yorick-av

    Buster:(0.0.5-1+b1) Stretch:(0.0.4-2~deb9u1) write movies from Yorick in various formats www

  • yorick-cubeview

    Buster & Stretch:(2.2-2) 3D FITS data viewer specialized in spectro-imaging www

  • yorick-curses

    Buster & Stretch:(0.1-6) interface to the (n)curses library for the Yorick language

  • yorick-data

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6) interpreted library for the Yorick language www

  • yorick-dev

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6+b3) development files for the Yorick interpreted language www

  • yorick-gl

    Buster & Stretch:(1.1+cvs20070922+dfsg-6.1) OpenGL 3D graphics support for the Yorick language www

  • yorick-gy

    Buster & Stretch:(0.0.5-1) GObject introspection and Gtk bindings for Yorick www

  • yorick-gyoto

    Buster:(1.3.1-1+b1) Stretch:(1.2.0-2) General relativistic geodesic integration for the Yorick language www

  • yorick-hdf5

    Buster:(0.8.0-8+b1) Stretch:(0.8.0-8) Hierarchical Data Format 5 interface for the Yorick language

  • yorick-imutil

    Buster & Stretch:(0.5.7-3) fast image manipulation routines for the Yorick language

  • yorick-mira

    Buster & Stretch:(1.1.0+git20170124.3bd1c3~dfsg1-2) optical interferometry image reconstruction within Yorick www

  • yorick-ml4

    Buster & Stretch:(0.6.0-3) Matlab file format support for the Yorick language

  • yorick-mpeg

    Buster & Stretch:(0.1-3) MPEG output support for the Yorick language www

  • yorick-mpy-common

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6) Message Passing Yorick (common files) www

  • yorick-mpy-mpich2

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6+b3) Message Passing Yorick (MPICH2 build) www

  • yorick-mpy-openmpi

    Buster:(2.2.04+dfsg1-10) Stretch:(2.2.04+dfsg1-6+b3) Message Passing Yorick (OpenMPI build) www

  • yorick-optimpack

    Buster & Stretch:(1.3.2+dfsg+1.4.0-1) optimization of large scale problems for the Yorick language www

  • yorick-soy

    Buster & Stretch:(1.4.0-3) sparse matrix operations for the Yorick language www

  • yorick-spydr

    Buster & Stretch:(0.8.2-3) FITS image display and simple analysis www

  • yorick-svipc

    Buster:(0.16-3) Stretch:(0.16-2+b1) interprocess communication (shared memory...) for Yorick www

  • yorick-yao

    Buster:(5.4.0-1+b16) Stretch:(5.4.0-1+b1) Yorick-based adaptive optics system simulator www

  • yorick-yeti

    Buster & Stretch:(6.4.0-1) utility plugin for the Yorick language www

  • yorick-yeti-fftw

    Buster & Stretch:(6.4.0-1) FFT plugin for the Yorick language www

  • yorick-yeti-regex

    Buster & Stretch:(6.4.0-1) POSIX regular expressions for the Yorick language www

  • yorick-yeti-tiff

    Buster & Stretch:(6.4.0-1) TIFF image format input for the Yorick language www

  • yorick-ygsl

    Buster:(1.2.1-1+b2) Stretch:(1.2.1-1) GSL special functions plugin for the Yorick language www

  • yorick-ynfft

    Buster & Stretch:(1.0.3-1) nonequispaced fast Fourier transform for Yorick www

  • yorick-yutils

    Buster & Stretch:(1.5.2-1) various utilities for the Yorick language

  • yorick-z

    Buster & Stretch:(1.2.0+cvs20080115-5) zlib, jpeg and png support for the Yorick language www
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  • Z

  • z3

    Buster:(4.4.1-1~deb10u1) Stretch:(4.4.1-1~deb9u1) theorem prover from Microsoft Research www

  • z88

    Buster:(13.0.0+dfsg2-6) Stretch:(13.0.0+dfsg2-4) Finite Element Analysis Program - runtime www

  • z88-data

    Buster:(13.0.0+dfsg2-6) Stretch:(13.0.0+dfsg2-4) Finite Element Analysis Program - data www

  • zalign

    Buster:(0.9.1-4) Stretch:(0.9.1-2+b2) parallel local alignment of biological sequences www

  • zegrapher

    Buster:(3.0.2-1) Stretch:(3.0-2) plotting mathematical functions and sequences on the plane www

  • zimpl

    Buster:(3.3.6-1) Stretch:(3.3.2-1) mathematical modeling language for optimization problems www

  • ztex-bmp

    Buster & Stretch:(20120314-2) universal macro processor www

Packages Types