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Raspberry Pi OS Software Packages

Raspberry Pi OS is the offical operating system of the Raspberry Pi (previously known as Raspbian). Though not the only Operarting Systems the Raspberry Pi can use, it is the one that has the setup and software managed by the Raspberry Pi foundation. Raspberry Pi OS is a Linux OS based on Debian. As with all Linux distributions there are 1000's of free Open Source programs that can be downloaded from a Terminal Screen or a Desktop app. This section list the 1000's of programs that can be downloaded for the current version of Raspberry Pi OS, Buster version 10 and the previouse version, Stretch.

Science Packages

raspberry Science related packages

To install Raspberry Pi OS software on a Raspberry Pi

Packages are installed using Terminal. First get an updated package list by entering the following command in to terminal if this has not been done today sudo apt update
Then install your chosen package with the command sudo apt install package name Find out more with the Guide to installing software with the apt command

WWW: Please Note: each listing has a www link to a related webpage, the links are supplied by the author. I can not guarantee thay are all active and related to the listed package.

Distro Version:

The latest Distro for Raspberry Pi OS is Bullseye, the previouse version was Buster. Next to each package is the version available for each distro.

Bullseye(#) = Raspberry Pi OS Bullseye
Buster(#) = Raspberry Pi OS Buster
Bullseye & Buster(#) = same version for both.
If only one Distro is listed then the package is only available on that distribution.

Jump to section A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

SCIENCE

Last Updated: 28 November, 2022

  • 3depict

    Bullseye:(0.0.22-2+b3) Buster:(0.0.21-1) visualisation and analysis for single valued point data www
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  • A

  • abacas

    Bullseye:(1.3.1-9) Buster:(1.3.1-5) close gaps in genomic alignments from short reads www

  • abacas-examples

    Bullseye:(1.3.1-9) sample data for abacas to close gaps in genomic alignments www

  • abinit

    Bullseye:(9.2.2-1) Buster:(8.8.4-2) package for electronic structure calculations www

  • abyss

    Bullseye:(2.2.5+dfsg-1) Buster:(2.1.5-7) de novo, parallel, sequence assembler for short reads www

  • acedb-other

    Bullseye:(4.9.39+dfsg.02-5) Buster:(4.9.39+dfsg.02-4) retrieval of DNA or protein sequences www

  • acedb-other-belvu

    Bullseye:(4.9.39+dfsg.02-5) Buster:(4.9.39+dfsg.02-4) transitional package for belvu www

  • acedb-other-dotter

    Bullseye:(4.9.39+dfsg.02-5) Buster:(4.9.39+dfsg.02-4) transitional package for dotter www

  • aces3

    Bullseye:(3.0.8-7) Buster:(3.0.8-6) Advanced Concepts in Electronic Structure III www

  • aces3-data

    Bullseye:(3.0.8-7) Buster:(3.0.8-6) Advanced Concepts in Electronic Structure III www

  • achilles

    Bullseye:(2-10) Buster:(2-9) Artificial life and evolution simulator www

  • adapterremoval

    Bullseye:(2.3.1-3) Buster:(2.2.3-1) rapid adapter trimming, identification, and read merging of gene sequences www

  • adapterremoval-examples

    Bullseye:(2.3.1-3) Buster:(2.2.3-1) rapid adapter trimming, identification, and read merging (example data) www

  • adms

    Bullseye:(2.3.6-3) Buster:(2.3.6-2) Automatic device model synthesizer for Verilog-AMS www

  • adun-core

    Bullseye:(0.81-14) Buster:(0.81-13) Molecular Simulator www

  • adun.app

    Bullseye:(0.81-14) Buster:(0.81-13) Molecular Simulator for GNUstep (GUI) www

  • aegean

    Bullseye:(0.16.0+dfsg-2) Buster:(0.16.0+dfsg-1) integrated genome analysis toolkit www

  • aeskulap

    Bullseye:(0.2.2-beta2+git20190406.ef77f01-3+b1) Buster:(0.2.2-beta2+git20180219.8787e95-2) medical image viewer and DICOM network client www

  • aevol

    Bullseye:(5.0+ds-2) Buster:(5.0-2) digital genetics model to run Evolution Experiments in silico www

  • aghermann

    Bullseye:(1.1.2-3+b1) Buster:(1.1.2-2) Sleep-research experiment manager www

  • aladin

    Bullseye:(11.024+dfsg2-1) Buster:(10.076+dfsg-1) Interactive sky atlas for astronomical images and datasets www

  • alfa

    Bullseye:(2.1-1) Buster:(1.0-3+b1) Automated Line Fitting Algorithm www

  • algotutor

    Bullseye:(0.8.6-4) Buster:(0.8.6-2) program for observing the intermediate steps of algorithm www

  • alien-hunter

    Bullseye:(1.7-8) Buster:(1.7-7) Interpolated Variable Order Motifs to identify horizontally acquired DNA www

  • allelecount

    Bullseye:(4.2.1-1) NGS copy number algorithms www

  • altree

    Bullseye:(1.3.1-10+b1) Buster:(1.3.1-7+b1) program to perform phylogeny-based association and localization analysis www

  • altree-examples

    Bullseye:(1.3.1-10) Buster:(1.3.1-7) example files for ALTree www

  • amap-align

    Bullseye:(2.2+git20080214.600fc29+dfsg-2) Buster:(2.2+git20080214.600fc29+dfsg-1) Protein multiple alignment by sequence annealing www

  • ampliconnoise

    Bullseye:(1.29-9) Buster:(1.29-8) removal of noise from 454 sequenced PCR amplicons www

  • andi

    Bullseye:(0.13-3+b1) Buster:(0.12-4) Efficient Estimation of Evolutionary Distances www

  • anfo

    Bullseye:(0.98-8) Buster:(0.98-7+b1) Short Read Aligner/Mapper from MPG www

  • aoflagger

    Bullseye:(3.0.0-2+b1) Buster:(2.13.0-1) Find RFI in radio astronomical observations www

  • apbs

    Bullseye:(3.0.0+dfsg1-3+b1) Buster:(1.4-1) Adaptive Poisson Boltzmann Solver www

  • apbs-data

    Bullseye:(3.0.0+dfsg1-3) data files for APBS (Adaptive Poisson Boltzmann Solver) www

  • apertium

    Bullseye:(3.7.1-1) Buster:(3.5.2-1) Shallow-transfer machine translation engine www

  • apertium-af-nl

    Bullseye:(0.3.0-2) Buster:(0.2.0~r58256-2) Transitional dummy package for apertium-afr-nld www

  • apertium-afr-nld

    Bullseye:(0.3.0-2) Apertium translation data for the Afrikaans-Dutch pair www

  • apertium-anaphora

    Bullseye:(1.0.2-1) Anaphora resolution module for Apertium www

  • apertium-apy

    Bullseye:(0.11.7-2) Buster:(0.11.4-2) Apertium APY service www

  • apertium-arg

    Bullseye:(0.1.2~r65494-2.1) Buster:(0.1.2~r65494-2) Apertium single language data for Aragonese www

  • apertium-arg-cat

    Bullseye:(0.2.0-2) Buster:(0.1.0~r64925-2) Apertium translation data for the Aragonese-Catalan pair www

  • apertium-bel

    Bullseye:(0.1.0~r81357-3) Buster:(0.1.0~r81357-2) Apertium single language data for Belarusian www

  • apertium-bel-rus

    Bullseye:(0.2.1-1) Buster:(0.2.0~r81186-2) Apertium translation data for the Belarusian-Russian pair www

  • apertium-br-fr

    Bullseye:(0.5.1-1) Buster:(0.5.0~r61325-3) Apertium linguistic data to translate between Breton and French www

  • apertium-ca-it

    Bullseye:(0.2.1-3) Buster:(0.1.1~r57554-2) Transitional dummy package for apertium-cat-ita www

  • apertium-cat

    Bullseye:(2.6.0-2) Buster:(2.6.0-1) Apertium single language data for Catalan www

  • apertium-cat-ita

    Bullseye:(0.2.1-3) Apertium translation data for the Catalan-Italian pair www

  • apertium-cat-srd

    Bullseye:(1.1.0-1) Buster:(1.0.0~r82995-2) Apertium translation data for the Catalan-Sardinian pair www

  • apertium-crh

    Bullseye:(0.2.0~r83161-2.1) Buster:(0.2.0~r83161-2) Apertium single language data for Crimean Tatar www

  • apertium-crh-tur

    Bullseye:(0.3.0-1) Buster:(0.3.0~r83159-2) Apertium translation data for the Crimean Tatar-Turkish pair www

  • apertium-cy-en

    Bullseye:(0.1.1~r57554-7) Buster:(0.1.1~r57554-4) Apertium translation data for the Welsh-English pair www

  • apertium-dan

    Bullseye:(0.6.0-2) Buster:(0.5.0~r67099-2) Apertium single language data for Danish www

  • apertium-dan-nor

    Bullseye:(1.4.1-2) Buster:(1.3.0~r67099-2) Apertium translation data for the Danish-Norwegian pair www

  • apertium-dev

    Bullseye:(3.7.1-1) Buster:(3.5.2-1) Development tools and library for Apertium www

  • apertium-en-gl

    Bullseye:(0.5.2~r57551-3) Buster:(0.5.2~r57551-2) Apertium translation data for the English-Galician pair www

  • apertium-eng-cat

    Bullseye:(1.0.1-4) Apertium translation data for the English-Catalan pair www

  • apertium-eo-en

    Bullseye:(1.0.0~r63833-3) Buster:(1.0.0~r63833-2) Apertium linguistic data to translate between Esperanto and English www

  • apertium-eo-fr

    Bullseye:(0.9.1-1) Buster:(0.9.0~r57551-2) Apertium translation data for the Esperanto-French pair www

  • apertium-es-ast

    Bullseye:(1.1.0~r51165-3) Buster:(1.1.0~r51165-2) Apertium translation data for the Spanish-Asturian pair www

  • apertium-es-it

    Bullseye:(0.2.0~r78826-2.1) Buster:(0.2.0~r78826-2) Transitional dummy package for apertium-spa-ita www

  • apertium-eu-en

    Bullseye:(0.3.1~r56205-3) Buster:(0.3.1~r56205-2) Apertium translation data for the Basque-English pair www

  • apertium-eval-translator

    Bullseye:(1.2.1-2) Evaluate machine translation output against reference www

  • apertium-fra

    Bullseye:(1.5.0-1.1) Buster:(1.5.0-1) Apertium single language data for French www

  • apertium-fra-cat

    Bullseye:(1.9.0-1) Buster:(1.5.0-1) Apertium translation data for the French-Catalan pair www

  • apertium-get

    Bullseye:(1.0.0-2) Helper for Apertium and Giellatekno languages and pairs www

  • apertium-hbs

    Bullseye:(0.5.0~r68212-3.1) Buster:(0.5.0~r68212-3) Apertium single language data for Serbo-Croatian www

  • apertium-hbs-eng

    Bullseye:(0.5.1-1) Buster:(0.1.0~r57598-2) Apertium translation data for the Serbo-Croatian - English pair www

  • apertium-hbs-mkd

    Bullseye:(0.1.0~r76450-4) Buster:(0.1.0~r76450-2.1) Apertium translation data for the Serbo-Croatian-Macedonian pair www

  • apertium-hbs-slv

    Bullseye:(0.5.1-1) Buster:(0.1.0~r59294-2) Apertium translation data for the Serbo-Croatian-Slovenian pair www

  • apertium-hin

    Bullseye:(0.1.0~r59158-2.1) Buster:(0.1.0~r59158-2) Apertium single language data for Hindi www

  • apertium-id-ms

    Bullseye:(0.1.2-3) Buster:(0.1.1~r57551-2) Transitional dummy package for apertium-ind-zlm www

  • apertium-ind-zlm

    Bullseye:(0.1.2-3) Apertium translation data for the Indonesian-Malay pair www

  • apertium-is-sv

    Bullseye:(0.1.0~r76450-3) Buster:(0.1.0~r76450-2) Apertium translation data for the Icelandic-Swedish pair www

  • apertium-isl

    Bullseye:(0.1.0~r65494-2.1) Buster:(0.1.0~r65494-2) Apertium single language data for Icelandic www

  • apertium-isl-eng

    Bullseye:(0.1.0~r66083-3) Buster:(0.1.0~r66083-2) Apertium translation data for the Icelandic-English pair www

  • apertium-ita

    Bullseye:(0.10.0~r82237-2.1) Buster:(0.10.0~r82237-2) Apertium single language data for Italian www

  • apertium-kaz

    Bullseye:(0.1.0~r61338-2.1) Buster:(0.1.0~r61338-2) Apertium single language data for Kazakh www

  • apertium-kaz-tat

    Bullseye:(0.2.1-1) Buster:(0.2.1~r57554-2) Apertium translation data for the Kazakh-Tatar pair www

  • apertium-lex-tools

    Bullseye:(0.2.7-1) Buster:(0.2.1-1) Constraint-based lexical selection module www

  • apertium-mk-bg

    Bullseye:(0.2.0~r49489-3) Buster:(0.2.0~r49489-2) Apertium translation data for the Macedonian-Bulgarian pair www

  • apertium-mk-en

    Bullseye:(0.1.1~r57554-3) Buster:(0.1.1~r57554-2) Apertium translation data for the Macedonian-English pair www

  • apertium-mlt-ara

    Bullseye:(0.2.0~r62623-2.1) Buster:(0.2.0~r62623-2) Apertium translation data for the Maltese-Arabic pair www

  • apertium-nno

    Bullseye:(1.0.0-2) Buster:(0.9.0~r69513-3) Apertium single language data for Norwegian Nynorsk www

  • apertium-nno-nob

    Bullseye:(1.3.0-1) Buster:(1.1.0~r66076-2) Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair www

  • apertium-nob

    Bullseye:(1.0.0-2) Buster:(0.9.0~r69513-2) Apertium single language data for Norwegian Bokmål www

  • apertium-oci

    Bullseye:(0.1.0-1.1) Buster:(0.1.0-1) Apertium single language data for Occitan www

  • apertium-oci-fra

    Bullseye:(0.3.0-3) Apertium translation data for the Occitan-French pair www

  • apertium-pol

    Bullseye:(0.1.1-2) Buster:(0.1.1-1) Apertium single language data for Polish www

  • apertium-pol-szl

    Bullseye:(0.2.1-2) Apertium translation data for the Polish-Silesian pair www

  • apertium-por-cat

    Bullseye:(0.10.0-1) Apertium translation data for the Portuguese-Catalan pair www

  • apertium-recursive

    Bullseye:(1.0.1-1) Apertium recursive structural transfer module www

  • apertium-rus

    Bullseye:(0.2.0~r82706-1.1) Buster:(0.2.0~r82706-1) Apertium single language data for Russian www

  • apertium-rus-ukr

    Bullseye:(0.2.1-2) Apertium translation data for the Russian-Ukrainian pair www

  • apertium-separable

    Bullseye:(0.3.6-2) Buster:(0.3.2-1) Reordering separable/discontiguous multiwords www

  • apertium-sme-nob

    Bullseye:(0.6.1+ds.1-2) Buster:(0.6.0~r61921-2) Apertium translation data for the Northern Sami-Norwegian Bokmål pair www

  • apertium-spa

    Bullseye:(1.1.0~r79716-2.1) Buster:(1.1.0~r79716-2) Apertium single language data for Spanish www

  • apertium-spa-arg

    Bullseye:(0.5.0-1) Buster:(0.4.0~r64399-2) Apertium translation data for the Spanish-Aragonese pair www

  • apertium-spa-cat

    Bullseye:(2.2.0-2) Buster:(2.1.0~r79717-2) Apertium translation data for the Spanish-Catalan pair www

  • apertium-spa-ita

    Bullseye:(0.2.0~r78826-2.1) Buster:(0.2.0~r78826-2) Apertium translation data for the Spanish-Italian pair www

  • apertium-srd

    Bullseye:(1.2.0-1) Buster:(1.2.0~r82994-2) Apertium single language data for Sardinian www

  • apertium-srd-ita

    Bullseye:(1.1.0-1) Buster:(0.9.5~r82237-2) Apertium translation data for the Sardinian-Italian pair www

  • apertium-swe

    Bullseye:(0.8.0-2) Buster:(0.7.0~r69513-2) Apertium single language data for Swedish www

  • apertium-swe-dan

    Bullseye:(0.8.1-2) Buster:(0.7.0~r66063-2) Apertium translation data for the Swedish-Danish pair www

  • apertium-swe-nor

    Bullseye:(0.3.1-1) Buster:(0.2.0~r69544-2) Apertium translation data for the Swedish-Norwegian pair www

  • apertium-szl

    Bullseye:(0.1.0-1.1) Buster:(0.1.0-1) Apertium single language data for Silesian www

  • apertium-tat

    Bullseye:(0.1.0~r60887-2.1) Buster:(0.1.0~r60887-2) Apertium single language data for Tatar www

  • apertium-tur

    Bullseye:(0.2.0~r83161-2.1) Buster:(0.2.0~r83161-2) Apertium single language data for Turkish www

  • apertium-ukr

    Bullseye & Buster:(0.1.0~r82563-2) Apertium single language data for Ukrainian www

  • apertium-urd

    Bullseye:(0.1.0~r61311-2.1) Buster:(0.1.0~r61311-2) Apertium single language data for Urdu www

  • apertium-urd-hin

    Bullseye:(0.1.0~r64379-2.1) Buster:(0.1.0~r64379-2) Apertium translation data for the Urdu-Hindi pair www

  • aragorn

    Bullseye:(1.2.38-4) Buster:(1.2.38-2) tRNA and tmRNA detection in nucleotide sequences www

  • arb-common

    Bullseye & Buster:(6.0.6-4) phylogenetic sequence analysis suite - common files www

  • arden

    Bullseye:(1.0-5) Buster:(1.0-4) specificity control for read alignments using an artificial reference www

  • art-nextgen-simulation-tools

    Bullseye:(20160605+dfsg-4+b1) Buster:(20160605+dfsg-3) simulation tools to generate synthetic next-generation sequencing reads www

  • art-nextgen-simulation-tools-profiles

    Bullseye:(20160605+dfsg-4) Buster:(20160605+dfsg-3) profiles for art simulation tools www

  • artfastqgenerator

    Bullseye:(0.0.20150519-4) Buster:(0.0.20150519-3) outputs artificial FASTQ files derived from a reference genome www

  • artfastqgenerator-examples

    Bullseye:(0.0.20150519-4) Buster:(0.0.20150519-3) outputs artificial FASTQ files derived from a reference genome (examples) www

  • asdftool

    Bullseye:(2.7.2-1) Buster:(2.3.2-2) Command line tool to manipulate ASDF scientific data files www

  • ase

    Bullseye:(3.21.1-2) Buster:(3.17.0-2) Atomic Simulation Environment www

  • assembly-stats

    Bullseye:(1.0.1+ds-3) get assembly statistics from FASTA and FASTQ files www

  • assemblytics

    Bullseye:(1.0+ds-2) Buster:(1.0+ds-1) detect and analyze structural variants from a genome assembly www

  • astro-tasks

    Bullseye:(3.0) Buster:(2.0) Debian Astronomy Pure Blend (tasksel tasks) www

  • astromatic

    Bullseye:(1.2) Buster:(1.1) Astronomical pipeline software collection www

  • astrometry-data-2mass

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader www

  • astrometry-data-2mass-00

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (2'-2.8') www

  • astrometry-data-2mass-01

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (2.8'-4') www

  • astrometry-data-2mass-02

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (4'-5.6') www

  • astrometry-data-2mass-03

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (5.6'-8') www

  • astrometry-data-2mass-04

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (8'-11') www

  • astrometry-data-2mass-05

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (11'-16') www

  • astrometry-data-2mass-06

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (16'-22') www

  • astrometry-data-2mass-07

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (22'-30') www

  • astrometry-data-2mass-08-19

    Bullseye & Buster:(1.1) Astrometry.net 2MASS index files downloader (30'-2000') www

  • astrometry-data-tycho2

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 index files www

  • astrometry-data-tycho2-07

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 index files (22'-30') www

  • astrometry-data-tycho2-07-bigendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 big endian index files (22'-30') www

  • astrometry-data-tycho2-07-littleendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 little endian index files (22'-30') www

  • astrometry-data-tycho2-08

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 index files (30'-44') www

  • astrometry-data-tycho2-08-bigendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 big endian index files (30'-44') www

  • astrometry-data-tycho2-08-littleendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 little endian index files (30'-44') www

  • astrometry-data-tycho2-09

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 index files (44'-60') www

  • astrometry-data-tycho2-09-bigendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 big endian index files (44'-60') www

  • astrometry-data-tycho2-09-littleendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 little endian index files (44'-60') www

  • astrometry-data-tycho2-10-19

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 index files (60'-2000') www

  • astrometry-data-tycho2-10-19-bigendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 big endian index files (60'-2000') www

  • astrometry-data-tycho2-10-19-littleendian

    Bullseye & Buster:(2-4) Astrometry.net Tycho-2 little endian index files (60'-2000') www

  • astrometry.net

    Bullseye:(0.82+dfsg-1) Buster:(0.76+dfsg-3+b2) Astrometry plate solver www

  • astronomical-almanac

    Bullseye:(5.6-7) Buster:(5.6-6) astronomical almanac - calculate planet and star positions www

  • astropy-utils

    Bullseye:(4.2-6) Buster:(3.1.2-2) Command line tools from astropy www

  • atac

    Bullseye:(0~20150903+r2013-8+b1) Buster:(0~20150903+r2013-6+b3) genome assembly-to-assembly comparison www

  • ataqv

    Bullseye:(1.2.1+ds-1) ATAC-seq QC and visualization www

  • atropos

    Bullseye:(1.1.29+dfsg-1) NGS read trimming tool that is specific, sensitive, and speedy www

  • augur

    Bullseye:(11.0.0-1) pipeline components for real-time virus analysis www

  • augustus

    Bullseye:(3.4.0+dfsg2-2) Buster:(3.3.2+dfsg-2) gene prediction in eukaryotic genomes www

  • augustus-data

    Bullseye:(3.4.0+dfsg2-2) Buster:(3.3.2+dfsg-2) data files for AUGUSTUS www

  • autodock

    Bullseye:(4.2.6-8) Buster:(4.2.6-6) analysis of ligand binding to protein structure www

  • autodock-getdata

    Bullseye:(4.2.6-8) Buster:(4.2.6-6) instructions for getData to collect compounds www

  • autodock-test

    Bullseye:(4.2.6-8) Buster:(4.2.6-6) test files for AutoDock www

  • autodock-vina

    Bullseye:(1.1.2-6) Buster:(1.1.2-5) docking of small molecules to proteins www

  • autogrid

    Bullseye:(4.2.6-8) Buster:(4.2.6-6) pre-calculate binding of ligands to their receptor www

  • autogrid-test

    Bullseye:(4.2.6-8) Buster:(4.2.6-6) test files for AutoGrid www

  • avce00

    Bullseye:(2.0.0-8) Buster:(2.0.0-7) Conversion of ESRI Arcinfo Vector Coverage in E00 format www

  • avogadro

    Bullseye:(1.93.0-2) Buster:(1.2.0-4+b1) Molecular Graphics and Modelling System www

  • avogadro-utils

    Bullseye:(1.93.1-3) Molecular Graphics and Modelling System (library) www

  • axe-demultiplexer

    Bullseye:(0.3.3+dfsg-3) Buster:(0.3.3+dfsg-1) Trie-based DNA sequencing read demultiplexer www
  • Back to top

  • B

  • baitfisher

    Bullseye:(1.2.7+git20190123.241d060+dfsg-1) Buster:(1.2.7+git20180107.e92dbf2+dfsg-1) software package for designing hybrid enrichment probes www

  • bali-phy

    Bullseye:(3.6.0+dfsg-1) Buster:(3.4+dfsg-1) Bayesian Inference of Alignment and Phylogeny www

  • bamkit

    Bullseye:(0.0.1+git20170413.ccd079d-2) tools for common BAM file manipulations www

  • bamtools

    Bullseye:(2.5.1+dfsg-9) Buster:(2.5.1+dfsg-3) toolkit for manipulating BAM (genome alignment) files www

  • bandage

    Bullseye:(0.8.1-4) Buster:(0.8.1-1) Bioinformatics Application for Navigating De novo Assembly Graphs Easily www

  • bandage-examples

    Bullseye:(0.8.1-4) Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data) www

  • barrnap

    Bullseye:(0.9+dfsg-2) Buster:(0.9+dfsg-1) rapid ribosomal RNA prediction www

  • bart

    Bullseye:(0.6.00-3) Buster:(0.4.04-2) tools for computational magnetic resonance imaging www

  • bart-view

    Bullseye:(0.1.00-4) Buster:(0.1.00-2) viewer for multi-dimensional complex-valued data www

  • bbmap

    Bullseye:(38.90+dfsg-1) short read aligner and other bioinformatic tools www

  • bbmap-jni

    Bullseye:(38.90+dfsg-1) short read aligner and other bioinformatic tools - JNI library www

  • bcbio

    Bullseye:(1.2.5-1) Buster:(1.1.2-3) toolkit for analysing high-throughput sequencing data www

  • bcftools

    Bullseye:(1.11-1) Buster:(1.9-1) genomic variant calling and manipulation of VCF/BCF files www

  • beads

    Bullseye:(1.1.20-2) Buster:(1.1.18+dfsg-3) 2-DE electrophoresis gel image spot detection www

  • beagle

    Bullseye:(5.1-200518+dfsg-1) Buster:(5.0-180928+dfsg-1+deb10u1) Genotype calling, genotype phasing and imputation of ungenotyped markers www

  • beast-mcmc

    Bullseye:(1.10.4+dfsg-2) Buster:(1.10.4+dfsg-1) Bayesian MCMC phylogenetic inference www

  • beast2-mcmc

    Bullseye:(2.6.3+dfsg-2) Buster:(2.5.1+dfsg-2) Bayesian MCMC phylogenetic inference www

  • bedops

    Bullseye:(2.4.39+dfsg1-2) Buster:(2.4.35+dfsg-1) high-performance genomic feature operations www

  • bedtools

    Bullseye:(2.30.0+dfsg-1) Buster:(2.27.1+dfsg-4) suite of utilities for comparing genomic features www

  • bedtools-test

    Bullseye:(2.30.0+dfsg-1) Buster:(2.27.1+dfsg-4) test data for the bedtools package www

  • belvu

    Bullseye:(4.44.1+dfsg-6+b1) Buster:(4.44.1+dfsg-3) multiple sequence alignment viewer and phylogenetic tool www

  • berkeley-express

    Bullseye:(1.5.3+dfsg-1+b3) Buster:(1.5.2+dfsg-1+b1) Streaming quantification for high-throughput sequencing www

  • bio-eagle-examples

    Bullseye:(2.4.1-3) Buster:(2.4.1-1) Examples for bio-eagle www

  • bio-rainbow

    Bullseye:(2.0.4+dfsg-2) Buster:(2.0.4+dfsg-1) clustering and assembling short reads for bioinformatics www

  • bio-vcf

    Bullseye:(0.9.5-2) domain specific language (DSL) for processing the VCF format www

  • biogenesis

    Bullseye:(0.8-3.1) Buster:(0.8-3) artificial life program that simulates evolution of organisms www

  • biomaj

    Bullseye & Buster:(1.2.3-12) biological data-bank updater www

  • biomaj-properties

    Bullseye & Buster:(1.2.3-12) biological data-bank updater - example properties files www

  • biomaj-watcher

    Bullseye & Buster:(1.2.2-5) biological data-bank updater - web interface www

  • bioperl

    Bullseye:(1.7.7-2) Buster:(1.7.2-3) Perl tools for computational molecular biology www

  • bioperl-run

    Bullseye:(1.7.3-6) Buster:(1.7.2-4) BioPerl wrappers: scripts www

  • biosig-tools

    Bullseye:(2.1.2-4) Buster:(1.9.3-2) format conversion tools for biomedical data formats www

  • biosquid

    Bullseye:(1.9g+cvs20050121-12) Buster:(1.9g+cvs20050121-11) utilities for biological sequence analysis www

  • biosyntax

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (metapackage) www

  • biosyntax-common

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (common files) www

  • biosyntax-example

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (example) www

  • biosyntax-gedit

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (gedit) www

  • biosyntax-less

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (less) www

  • biosyntax-vim

    Bullseye:(1.0.0b-2) Buster:(1.0.0b-1) Syntax Highlighting for Computational Biology (vim) www

  • bist

    Bullseye:(0.5.2-1.2) Buster:(0.5.2-1.1+b2) chemical drawing tool www

  • bitseq

    Bullseye:(0.7.5+dfsg-5) Buster:(0.7.5+dfsg-4) Bayesian Inference of Transcripts from Sequencing Data www

  • bitwise

    Bullseye:(0.41-1) Interactive bitwise operation in ncurses www

  • blixem

    Bullseye:(4.44.1+dfsg-6+b1) Buster:(4.44.1+dfsg-3) interactive browser of sequence alignments www

  • bmt

    Bullseye:(0.6-1.1) Buster:(0.6-1) software analysis benchmarking toolkit www

  • bodr

    Bullseye:(10-2) Buster:(10-1) Blue Obelisk Data Repository www

  • boinc-app-milkyway

    Bullseye:(0.18d-4+b10) Buster:(0.18d-4+b7) Milkyway@home application for the BOINC client www

  • boinc-app-seti

    Bullseye:(8.00~svn4035-1+rpi1+b7) Buster:(8.00~svn3725-3+rpi1) SETI@home application for the BOINC client www

  • boinc-app-seti-graphics

    Bullseye:(8.00~svn4035-1+rpi1+b7) Buster:(8.00~svn3725-3+rpi1) SETI@home application for the BOINC client (with graphics) www

  • bolt-lmm-example

    Bullseye:(2.3.4+dfsg-3) Buster:(2.3.2+dfsg-3) Examples for bolt-lmm www

  • boolector

    Bullseye & Buster:(1.5.118.6b56be4.121013-1) SMT solver for bit-vectors and arrays www

  • bowtie-examples

    Bullseye:(1.3.0+dfsg1-1) Buster:(1.0.0-5) Examples for bowtie, the ultrafast memory-efficient short read aligner www

  • bowtie2-examples

    Bullseye:(2.4.2-2) Buster:(2.3.4.3-1) Examples for bowtie2 www

  • boxshade

    Bullseye:(3.3.1-14) Buster:(3.3.1-12) Pretty-printing of multiple sequence alignments www

  • bppphyview

    Bullseye:(0.6.1-2) Buster:(0.6.1-1) Bio++ Phylogenetic Viewer www

  • bppsuite

    Bullseye:(2.4.1-3) Buster:(2.4.1-1) Bio++ program suite www

  • bppsuite-examples

    Bullseye:(2.4.1-3) Buster:(2.4.1-1) Examples for Bio++ program suite www

  • brain2mesh-demos

    Bullseye:(0.7.9-2) sample files and demo scripts for Brain2Mesh www

  • brig

    Bullseye:(0.95+dfsg-3) Buster:(0.95+dfsg-2) BLAST Ring Image Generator www

  • busco

    Bullseye:(5.0.0-1) benchmarking sets of universal single-copy orthologs www

  • bwa

    Bullseye:(0.7.17-6) Buster:(0.6.2-1) Burrows-Wheeler Aligner www
  • Back to top

  • C

  • c2x

    Bullseye:(2.35a+ds-1) converter between DFT electronic structure codes formats www

  • cafeobj

    Bullseye:(1.6.0-2) Buster:(1.5.9-1) new generation algebraic specification and programming language www

  • cafeobj-mode

    Bullseye:(1.6.0-2) Buster:(1.5.9-1) Emacs major mode for editing CafeOBJ source code www

  • caffe

    Bullseye:(1.0.0+git20180821.99bd997-8+b2) Tools for fast, open framework for Deep Learning (CPU_ONLY) www

  • calculix-ccx

    Bullseye:(2.17-3) Buster:(2.11-1) Three-Dimensional Structural Finite Element Program www

  • calculix-cgx

    Bullseye:(2.17+dfsg-2) Buster:(2.11+dfsg-1) Calculix cgx is a 3-dimensional pre- and post-processor for fem www

  • callisto

    Bullseye:(1.1.0-2+b1) Daemon for e-Callisto hardware www

  • canu

    Bullseye:(2.0+dfsg-1+b2) single molecule sequence assembler for genomes www

  • casacore-data-igrf

    Bullseye & Buster:(12-1) International Geomagnetic Reference Field data for casacore www

  • casacore-data-jpl-de200

    Bullseye:(2007.07.05+ds.1-1) Buster:(2007.07.05+ds.1-0+deb10u1) Jet Propulsion Laboratory Development Ephemeris DE200 for casacore www

  • casacore-data-jpl-de405

    Bullseye:(2007.07.05+ds.1-1) Buster:(2007.07.05+ds.1-0+deb10u1) Jet Propulsion Laboratory Development Ephemeris DE405 for casacore www

  • casacore-data-lines

    Bullseye & Buster:(0+git2016.11.26-2) Table of spectral line frequencies for casacore www

  • casacore-data-observatories

    Bullseye:(0+git2018.12.08-2) Buster:(0+git2018.12.08-1) Table of radio observatory coordinates for casacore www

  • casacore-data-sources

    Bullseye & Buster:(2-2) Table of ICRF reference source coordinates for casacore www

  • casacore-data-tai-utc

    Bullseye:(1.3) Buster:(1.2) Difference table between TAI and UTC for casacore

  • casacore-tools

    Bullseye:(3.3.0-4+b1) Buster:(3.0.0-4) Tools built with CASA www

  • cassbeam

    Bullseye:(1.1-3) Buster:(1.1-1) Cassegrain antenna modelling www

  • cassiopee

    Bullseye:(1.0.9-3) Buster:(1.0.9-2) index and search tool in genomic sequences www

  • cat-bat

    Bullseye:(5.2.2-1) taxonomic classification of contigs and metagenome-assembled genomes (MAGs) www

  • cba

    Bullseye:(0.3.6-5) Buster:(0.3.6-4.1+b1) Continuous Beam Analysis www

  • cbflib-bin

    Bullseye:(0.9.6+dfsg1-2+b2) Buster:(0.9.5.18+dfsg1-1+b1) utilities to manipulate CBF files www

  • cbmc

    Bullseye:(5.12-5+b1) Buster:(5.10-5) bounded model checker for C and C++ programs www

  • cclib

    Bullseye:(1.6.2-2) Buster:(1.6-1) Parsers and algorithms for computational chemistry www

  • cclib-data

    Bullseye:(1.6.2-2) Buster:(1.1-1) Parsers and algorithms for computational chemistry (data files) www

  • cct

    Bullseye:(1:1.0.0-1) Buster:(20170919+dfsg-1) visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences www

  • cct-examples

    Bullseye:(1:1.0.0-1) Buster:(20170919+dfsg-1) example data for testing the package cct www

  • cd-hit

    Bullseye:(4.8.1-3) Buster:(4.6.8-2) suite of programs designed to quickly group sequences www

  • cdbfasta

    Bullseye:(1.00+git20181005.014498c+dfsg-2) Buster:(0.99-20100722-5) Constant DataBase indexing and retrieval tools for multi-FASTA files www

  • celestia-common-nonfree

    Bullseye & Buster:(1.6.1-1) Non-free datafiles for Celestia, a real-time visual space simulation www

  • centrifuge

    Bullseye:(1.0.3-8) rapid and memory-efficient system for classification of DNA sequences www

  • cernlib

    Bullseye & Buster:(20061220+dfsg3-4.4) CERNLIB data analysis suite - general use metapackage www

  • cernlib-core

    Bullseye & Buster:(20061220+dfsg3-4.4) CERNLIB data analysis suite - main libraries and programs www

  • cernlib-extras

    Bullseye & Buster:(20061220+dfsg3-4.4) CERNLIB data analysis suite - extra programs www

  • cg3

    Bullseye:(1.3.2-1) Buster:(1.1.7-1+b1) Tools for using the 3rd edition of Constraint Grammar (CG-3) www

  • cg3-dev

    Bullseye:(1.3.2-1) Metapackage providing both CG-3 CLI dev tools and dev library www

  • cgns-convert

    Bullseye:(3.4.0-3) Buster:(3.3.0-7~deb10u1) CFD General Notation System - Conversion tools www

  • cgview

    Bullseye:(0.0.20100111-7) Buster:(0.0.20100111-4) Circular Genome Viewer www

  • ch5m3d

    Bullseye:(1.2.5+dfsg-2.1) Buster:(1.2.5+dfsg-2) create and visualize 3-dimensional drawings of simple molecules www

  • changeo

    Bullseye:(1.0.2-1) Buster:(0.4.5-1) Repertoire clonal assignment toolkit (Python 3) www

  • checkit-tiff

    Bullseye & Buster:(0.2.3-2) conformance checker for baseline TIFFs www

  • chemical-structures

    Bullseye:(2.2.dfsg.0-18) Buster:(2.2.dfsg.0-13) web service providing molecular structures in open formats

  • chemical-structures-data

    Bullseye:(2.2.dfsg.0-18) set of molecular structures in open formats

  • chemps2

    Bullseye:(1.8.10-2) Buster:(1.8.9-1+b1) Executable to call libchemps2-3 from the command line www

  • chemtool

    Bullseye:(1.6.14-6+b2) Buster:(1.6.14-3+b4) chemical structures drawing program www

  • chimeraslayer

    Bullseye:(20101212+dfsg1-4) Buster:(20101212+dfsg1-2) detects likely chimeras in PCR amplified DNA www

  • chip-seq

    Bullseye:(1.5.5-3+b5) tools performing common ChIP-Seq data analysis tasks www

  • chip-seq-data

    Bullseye:(1.5.5-3) tools performing common ChIP-Seq data analysis tasks (data) www

  • chromhmm

    Bullseye:(1.21+dfsg-1) Buster:(1.18+dfsg-1) Chromatin state discovery and characterization www

  • chromimpute

    Bullseye:(1.0.3+dfsg-2) Buster:(1.0.3+dfsg-1) Large-scale systematic epigenome imputation www

  • cif-linguist

    Bullseye:(0.4.2-2) transform CIF data among CIF formats and dialects www

  • cif-tools

    Bullseye:(1.0.0-3) Suite of tools to manipulate, validate and query mmCIF files www

  • circos

    Bullseye:(0.69.9+dfsg-2) Buster:(0.69.6+dfsg-2) plotter for visualizing data www

  • circos-tools

    Bullseye & Buster:(0.23-1) plotter for visualizing data - helper utilities www

  • ckon

    Bullseye:(0.7.1-3+b5) Buster:(0.7.1-3+b4) automatic build tool for ROOT data analysis software www

  • clearcut

    Bullseye:(1.0.9-6) Buster:(1.0.9-3) extremely efficient phylogenetic tree reconstruction www

  • clonalframe

    Bullseye:(1.2-10+b1) Buster:(1.2-9) inference of bacterial microevolution using multilocus sequence data www

  • clonalframeml

    Bullseye:(1.12-1) Buster:(1.11-3) Efficient Inference of Recombination in Whole Bacterial Genomes www

  • clonalorigin

    Bullseye:(1.0-4) Buster:(1.0-3) inference of homologous recombination in bacteria using whole genome sequences www

  • clustalo

    Bullseye:(1.2.4-7) Buster:(1.2.4-2) General-purpose multiple sequence alignment program for proteins www

  • clustalw

    Bullseye:(2.1+lgpl-7) Buster:(2.1+lgpl-6) global multiple nucleotide or peptide sequence alignment www

  • clustalx

    Bullseye:(2.1+lgpl-9) Buster:(2.1+lgpl-8) Multiple alignment of nucleic acid and protein sequences (graphical interface) www

  • cmor-tables

    Bullseye:(3.3-1.1) Buster:(3.3-1) MIP tables for the Climate Model Output Rewriter library www

  • cmtk

    Bullseye:(3.3.1p1+dfsg-2+b1) Buster:(3.3.1p1+dfsg-1) Computational Morphometry Toolkit www

  • cod-tools

    Bullseye:(3.1.0+dfsg-3) Buster:(2.3+dfsg-3) tools for manipulating CIF format files www

  • code-saturne

    Bullseye:(6.0.2-2) Buster:(5.3.2+repack-1) General purpose Computational Fluid Dynamics (CFD) software www

  • code-saturne-bin

    Bullseye:(6.0.2-2) Buster:(5.3.2+repack-1) General purpose Computational Fluid Dynamics (CFD) software - binaries www

  • code-saturne-data

    Bullseye:(6.0.2-2) Buster:(5.3.2+repack-1) General purpose Computational Fluid Dynamics (CFD) software - data www

  • code-saturne-doc

    Bullseye:(6.0.2-2) Buster:(5.3.2+repack-1) General purpose Computational Fluid Dynamics (CFD) software - Documentation www

  • code-saturne-include

    Bullseye:(6.0.2-2) Buster:(5.3.2+repack-1) General purpose Computational Fluid Dynamics (CFD) software - includes www

  • codonw

    Bullseye:(1.4.4-6) Buster:(1.4.4-4) Correspondence Analysis of Codon Usage www

  • coinor-cbc

    Bullseye:(2.10.5+ds1-3) Buster:(2.9.9+repack1-1) Coin-or branch-and-cut mixed integer programming solver www

  • coinor-clp

    Bullseye:(1.17.5+repack1-1) Buster:(1.16.11+repack1-1) Coin-or linear programming solver www

  • coinor-csdp

    Bullseye:(6.2.0-3) Buster:(6.1.1-1+b1) Software package for semidefinite programming (binaries) www

  • coinor-libcbc3

    Bullseye:(2.10.5+ds1-3) Buster:(2.9.9+repack1-1) Coin-or branch-and-cut mixed integer programming solver (shared libraries) www

  • coinor-libcgl1

    Bullseye:(0.60.3+repack1-2) Buster:(0.59.10+repack1-1) COIN-OR Cut Generation Library www

  • coinor-libclp1

    Bullseye:(1.17.5+repack1-1) Buster:(1.16.11+repack1-1) Coin-or linear programming solver (shared libraries) www

  • coinor-libcoinutils3v5

    Bullseye:(2.11.4+repack1-1) Buster:(2.10.14+repack1-1) Coin-or collection of utility classes (binaries and libraries) www

  • coinor-libflopc++0

    Bullseye & Buster:(1.0.6-3.1+b2) Formulation of Linear Optimization Problems in C++ www

  • coinor-libosi1v5

    Bullseye:(0.108.6+repack1-2) Buster:(0.107.9+repack1-1) COIN-OR Open Solver Interface www

  • coinor-libsymphony3

    Bullseye:(5.6.16+repack1-3) Buster:(5.6.16+repack1-1.1) COIN-OR solver for mixed-integer linear programs (shared libraries) www

  • coinor-libvol1

    Bullseye:(1.5.4-4) Coin-or linear programming solver (libraries) www

  • coinor-symphony

    Bullseye:(5.6.16+repack1-3) Buster:(5.6.16+repack1-1.1) COIN-OR solver for mixed-integer linear programs www

  • comet-ms

    Bullseye:(2019015+cleaned1-3) Buster:(2018012-1) Tandem mass spectrometry (MS/MS) search engine www

  • concavity

    Bullseye:(0.1+dfsg.1-5) Buster:(0.1+dfsg.1-4) predictor of protein ligand binding sites from structure and conservation www

  • conda-package-handling

    Bullseye:(1.7.2-2) create and extract conda packages of various formats www

  • connectome-workbench

    Bullseye:(1.5.0-1) Buster:(1.3.2-1) brain visualization, analysis and discovery tool www

  • conservation-code

    Bullseye:(20110309.0-8) Buster:(20110309.0-7) protein sequence conservation scoring tool www

  • covtobed

    Bullseye:(1.2.0+dfsg-1+b2) convert the coverage track from a BAM file into a BED file www

  • covtobed-examples

    Bullseye:(1.2.0+dfsg-1) example data and scripts for mindthegap www

  • cp2k

    Bullseye:(8.1-9) Buster:(6.1-2) Ab Initio Molecular Dynamics www

  • cp2k-data

    Bullseye:(8.1-9) Buster:(6.1-2) Ab Initio Molecular Dynamics (data files) www

  • cpl-plugin-amber

    Bullseye:(4.4.0+dfsg-4) Buster:(4.3.8+dfsg-1+b1) ESO data reduction pipeline for the AMBER instrument www

  • cpl-plugin-amber-calib

    Bullseye:(4.4.0+dfsg-4) Buster:(4.3.8+dfsg-1) ESO data reduction pipeline calibration data downloader for AMBER www

  • cpl-plugin-fors

    Bullseye:(5.5.6+dfsg-4) Buster:(5.3.32+dfsg-1) ESO data reduction pipeline for the FORS1/2 instruments www

  • cpl-plugin-fors-calib

    Bullseye:(5.5.6+dfsg-4) Buster:(5.3.32+dfsg-1) ESO data reduction pipeline calibration data downloader for FORS2 www

  • cpl-plugin-giraf

    Bullseye:(2.16.7+dfsg-4) Buster:(2.16.3+dfsg-1+b1) ESO data reduction pipeline for the GIRAFFE instrument www

  • cpl-plugin-giraf-calib

    Bullseye:(2.16.7+dfsg-4) Buster:(2.16.3+dfsg-1) ESO data reduction pipeline calibration data downloader for GIRAFFE www

  • cpl-plugin-hawki

    Bullseye:(2.4.8+dfsg-4) Buster:(2.4.3+dfsg-1) ESO data reduction pipeline for the HAWK-I instrument www

  • cpl-plugin-hawki-calib

    Bullseye:(2.4.8+dfsg-4) Buster:(2.4.3+dfsg-1) ESO data reduction pipeline calibration data downloader for HAWK-I www

  • cpl-plugin-kmos

    Bullseye & Buster:(2.1.0+dfsg-1) ESO data reduction pipeline for the KMOS instrument www

  • cpl-plugin-kmos-calib

    Bullseye & Buster:(2.1.0+dfsg-1) ESO data reduction pipeline calibration data downloader for KMOS www

  • cpl-plugin-muse

    Bullseye:(2.8.3+dfsg-4) Buster:(2.6+dfsg-1) ESO data reduction pipeline for the MUSE instrument www

  • cpl-plugin-muse-calib

    Bullseye:(2.8.3+dfsg-4) Buster:(2.6+dfsg-1) ESO data reduction pipeline calibration data downloader for MUSE www

  • cpl-plugin-naco

    Bullseye:(4.4.9+dfsg-4) Buster:(4.4.6+dfsg-1) ESO data reduction pipeline for the NaCo instrument www

  • cpl-plugin-naco-calib

    Bullseye:(4.4.9+dfsg-4) Buster:(4.4.6+dfsg-1) ESO data reduction pipeline NaCo calibration data downloader www

  • cpl-plugin-uves

    Bullseye:(6.1.3+dfsg-5) Buster:(5.9.1+dfsg-1+b1) ESO data reduction pipeline for the UVES instrument www

  • cpl-plugin-uves-calib

    Bullseye:(6.1.3+dfsg-5) Buster:(5.9.1+dfsg-1) ESO data reduction pipeline calibration data downloader for UVES www

  • cpl-plugin-vimos

    Bullseye:(4.1.1+dfsg-4) Buster:(3.2.3+dfsg-2+b1) ESO data reduction pipeline for the VIMOS instrument www

  • cpl-plugin-vimos-calib

    Bullseye:(4.1.1+dfsg-4) Buster:(3.2.3+dfsg-2) ESO data reduction pipeline calibration data downloader for VIMOS www

  • cpl-plugin-visir

    Bullseye:(4.3.10+dfsg-5) Buster:(4.3.7+dfsg-1+b1) ESO data reduction pipeline for the VISIR instrument www

  • cpl-plugin-visir-calib

    Bullseye:(4.3.10+dfsg-5) Buster:(4.3.7+dfsg-1) ESO data reduction pipeline calibration data downloader for VISIR www

  • cpl-plugin-xshoo

    Bullseye:(3.5.0+dfsg-4) Buster:(3.2.0+dfsg-1+b1) ESO data reduction pipeline for the XSHOOTER instrument www

  • cpl-plugin-xshoo-calib

    Bullseye:(3.5.0+dfsg-4) Buster:(3.2.0+dfsg-1) ESO data reduction pipeline calibration data downloader for XSHOOTER www

  • cpuinfo

    Bullseye:(0.0~git20200612.63b2545-2) Buster:(0.0~git20190201.d5e37ad-1) CPU INFOrmation library (binary utilities) www

  • crac

    Bullseye:(2.5.2+dfsg-4) integrated RNA-Seq read analysis www

  • critterding

    Bullseye & Buster:(1.0-beta12.1-1.3) Evolving Artificial Life www

  • ctdconverter

    Bullseye:(2.1-3) Buster:(2.0-4) Convert CTD files into Galaxy tool and CWL CommandLineTool files www

  • ctsim

    Bullseye:(6.0.2-5) Buster:(6.0.2-2) Computed tomography simulator www

  • ctsim-help

    Bullseye:(6.0.2-5) Buster:(6.0.2-2) Online help file for CTSim www

  • cutadapt

    Bullseye:(3.2-2) Buster:(1.18-1) Clean biological sequences from high-throughput sequencing reads www

  • cwlformat

    Bullseye:(2021.01.05-1) code formatter for Common Workflow Language www

  • cwltool

    Bullseye:(3.0.20210124104916-3) Buster:(1.0.20181217162649+dfsg-10) Common Workflow Language reference implementation www
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  • D

  • daligner

    Bullseye:(1.0+git20200727.ed40ce5-3) Buster:(1.0+git20180524.fd21879-1) local alignment discovery between long nucleotide sequencing reads www

  • damapper

    Bullseye:(0.0+git20200322.b2c9d7f-3) long read to reference genome mapping tool www

  • dans-gdal-scripts

    Bullseye:(0.24-3+b4) Buster:(0.24-3+b1) GDAL contributed tools by Geographic Information Network of Alaska www

  • darknet

    Bullseye:(0.0.0+git20180914.61c9d02e-2+b5) Buster:(0.0.0+git20180914.61c9d02e-1) Open Source Neural Networks in C www

  • dascrubber

    Bullseye:(1.1-2) Buster:(1.1-1) alignment-based scrubbing pipeline for DNA sequencing reads www

  • datalad

    Bullseye:(0.14.0-1) Buster:(0.11.2-2) data files management and distribution platform www

  • datalad-container

    Bullseye:(1.1.2-1) Buster:(0.2.2-2) DataLad extension for working with containerized environments www

  • dawg

    Bullseye:(1.2-3) Buster:(1.2-2) simulate the evolution of recombinant DNA sequences www

  • dazzdb

    Bullseye:(1.0+git20201103.8d98c37-1+deb11u1) Buster:(1.0+git20180908.0bd5e07-1) manage nucleotide sequencing read data www

  • dcl-f77

    Bullseye:(7.4.1-1) Buster:(7.3.3-1) GFD-DENNOU Club Library (DCL) - FORTRAN77 version www

  • dcm2niix

    Bullseye:(1.0.20201102-1) Buster:(1.0.20181125-1) next generation DICOM to NIfTI converter www

  • dcmtk

    Bullseye:(3.6.5-1) Buster:(3.6.4-2.1) OFFIS DICOM toolkit command line utilities www

  • debian-astro-logo

    Bullseye:(3.0) Buster:(2.0) Debian Astronomy Pure Blends Logo www

  • deepnano

    Bullseye:(0.0+git20170813.e8a621e-3.1+b9) alternative basecaller for MinION reads of genomic sequences www

  • deepnano-data

    Bullseye:(0.0+git20170813.e8a621e-3.1) Buster:(0.0+git20170813.e8a621e-3) alternative basecaller for MinION reads of genomic sequences (data) www

  • delly

    Bullseye:(0.8.7-1) Buster:(0.8.1-2) Structural variant discovery by read analysis www

  • density-fitness

    Bullseye:(1.0.0-2) Calculates per-residue electron density scores www

  • dextractor

    Bullseye:(1.0-4) (d)extractor and compression command library www

  • dh-r

    Bullseye:(20210303) Buster:(20190121) Debian helper tools for packaging R libraries

  • dialign

    Bullseye:(2.2.1-11) Buster:(2.2.1-10) Segment-based multiple sequence alignment www

  • dialign-tx

    Bullseye:(1.0.2-13) Buster:(1.0.2-12) Segment-based multiple sequence alignment www

  • dialign-tx-data

    Bullseye:(1.0.2-13) Buster:(1.0.2-12) Segment-based multiple sequence alignment (data files) www

  • diamond-aligner

    Bullseye:(0.9.30-3) Buster:(0.9.22+dfsg-2) accelerated BLAST compatible local sequence aligner www

  • dicomnifti

    Bullseye:(2.33.1-2) Buster:(2.33.1-1) converts DICOM files into the NIfTI format www

  • dicompyler

    Bullseye:(0.4.2.0+git20200106.2643e0e-1) Buster:(0.4.2.0-2) radiation therapy research platform www

  • dimbl

    Bullseye:(0.15-2.1+b2) Buster:(0.15-2.1) Distributed Memory Based Learner www

  • dindel

    Bullseye:(1.01-wu1-3+dfsg-2) Buster:(1.01-wu1-3+dfsg-1) determines indel calls from short-read data www

  • disulfinder

    Bullseye:(1.2.11-10) Buster:(1.2.11-8) cysteines disulfide bonding state and connectivity predictor www

  • disulfinder-data

    Bullseye:(1.2.11-10) Buster:(1.2.11-8) data files for predictor of disulfide bonds in proteins www

  • dlmodelbox

    Bullseye:(1.1.1-1) Buster:(0.1.3-1) Swiss Army Knife of Deep Learning Models www

  • dnaclust

    Bullseye:(3-7+b1) Buster:(3-6) tool for clustering millions of short DNA sequences www

  • dnapi

    Bullseye:(1.1-3) adapter prediction for small RNA sequencing - utils www

  • dotter

    Bullseye:(4.44.1+dfsg-6+b1) Buster:(4.44.1+dfsg-3) detailed comparison of two genomic sequences www

  • dotur

    Bullseye & Buster:(1.53-2) distance based OTU and richness estimation www

  • dozzaqueux

    Bullseye:(3.51-2.1) Buster:(3.51-2) simulator for chemical mixtures www

  • dozzaqueux-data

    Bullseye:(3.51-2.1) Buster:(3.51-2) databases for chemical mixtures www

  • dpuser

    Bullseye:(4.0+dfsg-3+b2) Buster:(3.3+p1+dfsg-2+b1) Interactive language for handling numbers, strings, and matrices www

  • drawxtl

    Bullseye:(5.5-5) Buster:(5.5-3+b2) crystal structure viewer www

  • drop-seq-testdata

    Bullseye:(2.4.0+dfsg-6) analyzing Drop-seq data (testdata) www

  • drop-seq-tools

    Bullseye:(2.4.0+dfsg-6) analyzing Drop-seq data www

  • drslib

    Bullseye:(0.3.1.p3-2) Buster:(0.3.1.p3-1) Command-line tools for the Data Reference Syntax library www

  • dsdp

    Bullseye & Buster:(5.8-9.4) Software for Semidefinite Programming www

  • dssp

    Bullseye:(4.0.0-2) Buster:(3.0.0-3) protein secondary structure assignment based on 3D structure www

  • dwgsim

    Bullseye:(0.1.12-4) Buster:(0.1.12-2) short sequencing read simulator www

  • dx

    Bullseye:(1:4.4.4-13) Buster:(1:4.4.4-12) OpenDX (IBM Visualization Data Explorer) - main package www

  • dxf2gcode

    Bullseye & Buster:(20170925-4) prepares drawings of parts for automatic machine tools www

  • dxsamples

    Bullseye:(4.4.0-5) Buster:(4.4.0-4) Sample programs for the OpenDX Data Explorer www
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  • E

  • e-mem

    Bullseye:(1.0.1-4) Buster:(1.0.1-2) Efficient computation of Maximal Exact Matches for very large genomes www

  • e00compr

    Bullseye:(1.0.1-6) Buster:(1.0.1-5) Program to read/write Arcinfo compressed E00 files www

  • ea-utils

    Bullseye:(1.1.2+dfsg-6) Buster:(1.1.2+dfsg-5) command-line tools for processing biological sequencing data www

  • easychem

    Bullseye:(0.6-9) Buster:(0.6-8) Draw high-quality molecules and 2D chemical formulas www

  • ecaccess

    Bullseye:(4.0.1-1.1) Buster:(4.0.1-1) clients to access ECMWF facilities www

  • ecflow-client

    Bullseye:(5.6.0-1+b1) Buster:(4.12.0-1) Client tools for Meteorological workflow www

  • ecflow-server

    Bullseye:(5.6.0-1+b1) Buster:(4.12.0-1) Meteorological workflow controller - server www

  • ecopcr

    Bullseye:(1.0.1+dfsg-2) Buster:(1.0.1+dfsg-1) estimate PCR barcode primers quality www

  • edfbrowser

    Bullseye:(1.81+dfsg-1) Buster:(1.67+dfsg-1) viewer for biosignal storage files such as bdf and edf www

  • edlib-aligner

    Bullseye:(1.2.6-1) Buster:(1.2.4-1) edlib sequence alignment tool using edit distance www

  • edtsurf

    Bullseye:(0.2009-10) Buster:(0.2009-6) triangulated mesh surfaces for protein structures www

  • eigensoft

    Bullseye:(7.2.1+dfsg-2) Buster:(7.2.1+dfsg-1+b1) reduction of population bias for genetic analyses www

  • elk-lapw

    Bullseye:(6.3.2-2) Buster:(5.4.24-2) All-Electron Density-Functional Electronic Structure Code www

  • elki

    Bullseye & Buster:(0.7.1-10.1) Data mining algorithm development framework www

  • elki-dev

    Bullseye & Buster:(0.7.1-10.1) Data mining algorithm development framework - development files www

  • elph

    Bullseye:(1.0.1-5) Buster:(1.0.1-2) DNA/protein sequence motif finder www

  • embassy-domainatrix

    Bullseye:(0.1.660-4) Buster:(0.1.660-3) Extra EMBOSS commands to handle domain classification file www

  • embassy-domalign

    Bullseye:(0.1.660-4) Buster:(0.1.660-3) Extra EMBOSS commands for protein domain alignment www

  • embassy-domsearch

    Bullseye & Buster:(1:0.1.660-3) Extra EMBOSS commands to search for protein domains www

  • emboss

    Bullseye:(6.6.0+dfsg-9) Buster:(6.6.0+dfsg-7+b1) European molecular biology open software suite www

  • emboss-data

    Bullseye:(6.6.0+dfsg-9) Buster:(6.6.0+dfsg-7) data files for the EMBOSS package www

  • emboss-explorer

    Bullseye:(2.2.0-11) Buster:(2.2.0-10) web-based GUI to EMBOSS www

  • emboss-lib

    Bullseye:(6.6.0+dfsg-9) Buster:(6.6.0+dfsg-7+b1) EMBOSS Libraries www

  • emmax

    Bullseye:(0~beta.20100307-1) genetic mapping considering population structure www

  • engauge-digitizer

    Bullseye:(12.1+ds.1-1) Buster:(10.10+ds.1-1) interactively extracts numbers from bitmap graphs or maps www

  • ent

    Bullseye:(1.2debian-3) Buster:(1.2debian-2) pseudorandom number sequence test program www

  • epigrass

    Bullseye:(3.0.0+dfsg-1) Buster:(2.4.7-2+b31) scientific tool for simulations and scenario analysis in network epidemiology www

  • epsilon-bin

    Bullseye:(0.9.2+dfsg-5) Buster:(0.9.2+dfsg-4) Library for wavelet image compression - tools www

  • ergo

    Bullseye:(3.8-1) Buster:(3.5-1) Quantum chemistry program for large-scale calculations www

  • ergo-data

    Bullseye:(3.8-1) Quantum chemistry program for large-scale calculations - data package www

  • eso-midas

    Bullseye:(19.02pl1.1-6) Buster:(19.02pl1.0-1) European Southern Observatory Munich Image Data Analysis System www

  • eso-midas-testdata

    Bullseye:(19.02pl1.1-6) Buster:(19.02pl1.0-1) Test data files for ESO-MIDAS www

  • eso-pipelines

    Bullseye:(1.3) Buster:(1.2) ESO VLT Instrument pipeline collection www

  • esorex

    Bullseye:(3.13.3+ds-1) Buster:(3.13.1-1+deb10u1) Execution Tool for European Southern Observatory pipelines www

  • estscan

    Bullseye:(3.0.3-5) Buster:(3.0.3-3) ORF-independent detector of coding DNA sequences www

  • esys-particle

    Bullseye:(2.3.5+dfsg2-1) Buster:(2.3.5+dfsg1-2.1) Software for particle-based numerical modelling (MPI version) www

  • etsf-io

    Bullseye:(1.0.4-5) Buster:(1.0.4-4) Binary tools to check, merge and read ETSF files www

  • examl

    Bullseye:(3.0.22-1) Exascale Maximum Likelihood (ExaML) code for phylogenetic inference www

  • exonerate

    Bullseye:(2.4.0-5) Buster:(2.4.0-4) generic tool for pairwise sequence comparison www

  • expeyes

    Bullseye:(4.8.8+repack-2) Buster:(4.4.4+dfsg-4) hardware & software framework for developing science experiments www

  • expeyes-clib

    Bullseye:(4.8.8+repack-2) Buster:(4.4.4+dfsg-4) hardware & software framework for developing science experiments www

  • eye

    Bullseye:(20.1027.2307~ds-1) Buster:(19.0221.2026~ds-1) semantic web reasoning engine www

  • eyes17

    Bullseye:(4.8.8+repack-2) Buster:(4.4.4+dfsg-4) hardware & software framework for developing science experiments www
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  • F

  • fact++

    Bullseye:(1.6.5~dfsg-3) Buster:(1.6.5~dfsg-2) description logic reasoner for the semantic web www

  • fast5

    Bullseye:(0.6.5-4) Buster:(0.6.5-2) utilities for manipulating Oxford Nanopore Fast5 files www

  • fasta3

    Bullseye:(36.3.8h.2020-02-11-3) tools for searching collections of biological sequences www

  • fastahack

    Bullseye:(1.0.0+dfsg-7) Buster:(0.0+git20160702.bbc645f+dfsg-6) utility for indexing and sequence extraction from FASTA files www

  • fastaq

    Bullseye:(3.17.0-3) Buster:(3.17.0-2) FASTA and FASTQ file manipulation tools www

  • fastdnaml

    Bullseye:(1.2.2-15) Buster:(1.2.2-14) Tool for construction of phylogenetic trees of DNA sequences www

  • fastlink

    Bullseye:(4.1P-fix100+dfsg-4) Buster:(4.1P-fix100+dfsg-2) faster version of pedigree programs of Linkage www

  • fastml

    Bullseye:(3.11-3) Buster:(3.1-4) maximum likelihood ancestral amino-acid sequence reconstruction www

  • fastp

    Bullseye:(0.20.1+dfsg-1) Buster:(0.19.6+dfsg-1) Ultra-fast all-in-one FASTQ preprocessor www

  • fastqc

    Bullseye:(0.11.9+dfsg-4) Buster:(0.11.8+dfsg-2) quality control for high throughput sequence data www

  • fastqtl

    Bullseye:(2.184+dfsg-7+b4) Buster:(2.184+dfsg-6) Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes www

  • fasttext

    Bullseye:(0.9.2-3+b1) Efficient learning of word representations and sentence classification library www

  • fasttree

    Bullseye:(2.1.11-2) Buster:(2.1.10-2) phylogenetic trees from alignments of nucleotide or protein sequences www

  • fastx-toolkit

    Bullseye & Buster:(0.0.14-6) FASTQ/A short nucleotide reads pre-processing tools www

  • feedgnuplot

    Bullseye:(1.57-1) Buster:(1.51-1) Pipe-oriented frontend to Gnuplot www

  • ffindex

    Bullseye:(0.9.9.9-4) Buster:(0.9.9.9-2) simple index/database for huge amounts of small files www

  • figtree

    Bullseye:(1.4.4-5) Buster:(1.4.4-3) graphical phylogenetic tree viewer www

  • filo

    Bullseye & Buster:(1.1.0-3) FILe and stream Operations www

  • filtlong

    Bullseye:(0.2.0-2) quality filtering tool for long reads of genome sequences www

  • filtlong-data

    Bullseye:(0.2.0-2) quality filtering tool for long reads of genome sequences (testdata) www

  • fiona

    Bullseye:(1.8.18-1+b1) Buster:(1.8.4-1+b1) Command line tool for reading/writing vector geospatial data www

  • firm-phoenix-ware

    Bullseye:(4.7.5+repack-1) firmware necessary for boxes issued by project PHOENIX www

  • fitgcp

    Bullseye:(0.0.20150429-4) Buster:(0.0.20150429-2) fitting genome coverage distributions with mixture models www

  • fitscut

    Bullseye:(1.4.4-5+b2) Buster:(1.4.4-4+b3) Extract cutouts from FITS image format files www

  • fitsh

    Bullseye:(0.9.4-1) Buster:(0.9.2-1) Software package for astronomical image processing www

  • fitspng

    Bullseye:(1.4-1+b2) Buster:(1.4-1) FITS to PNG converter www

  • fitsverify

    Bullseye:(4.20-3) Buster:(4.19-1+b1) FITS File Format-Verification Tool www

  • fityk

    Bullseye:(1.3.1-6) Buster:(1.3.1-3) general-purpose nonlinear curve fitting and data analysis www

  • flash

    Bullseye:(1.2.11-2) Fast Length Adjustment of SHort reads www

  • flexbar

    Bullseye:(1:3.5.0-3) Buster:(1:3.4.0-2) flexible barcode and adapter removal for sequencing platforms www

  • flexpart

    Bullseye:(9.02-23) Buster:(9.02-21) Particle Dispersion model for tracing air transport phenomena www

  • flextra

    Bullseye:(5.0-14) Buster:(5.0-12) Trajectory model for tracing air transport phenomena www

  • fml-asm

    Bullseye:(0.1+git20190320.b499514-1+rpi1) tool for assembling Illumina short reads in small regions www

  • foma

    Bullseye:(1:0.9.18+r243-8) Tools for constructing various finite-state automata www

  • foma-bin

    Bullseye:(1:0.9.18+r243-8) Buster:(0.9.18+r243-1+b1) Transitional package for foma www

  • form

    Bullseye:(4.2.1+git20200217-1) Buster:(4.2.1-1) Symbolic manipulation system www

  • fractalnow

    Bullseye:(0.8.2-4) Buster:(0.8.2-2) Fast, advanced fractal generator www

  • free42-nologo

    Bullseye:(2.5.25+ds-1) Buster:(1.4.77-1.2) Free42 is a re-implementation of the HP-42S calculator www

  • freebayes

    Bullseye:(1.3.5-1) Bayesian haplotype-based polymorphism discovery and genotyping www

  • freecad

    Bullseye:(0.19.1+dfsg1-2+deb11u1) Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program www

  • freecad-common

    Bullseye:(0.19.1+dfsg1-2+deb11u1) Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - common files www

  • freecad-python3

    Bullseye:(0.19.1+dfsg1-2+deb11u1) Buster:(0.18~pre1+dfsg1-5+rpi1) Extensible Open Source CAx program - Python 3 binaries www

  • freecontact

    Bullseye:(1.0.21-9) Buster:(1.0.21-7) fast protein contact predictor www

  • frog

    Bullseye:(0.20-2+b1) Buster:(0.15-1) tagger and parser for natural languages (runtime) www

  • frogdata

    Bullseye:(0.18-1) Buster:(0.16-1) Data files for Frog www

  • fsa

    Bullseye:(1.15.9+dfsg-6) Buster:(1.15.9+dfsg-4) Fast Statistical Alignment of protein, RNA or DNA sequences www

  • fsl

    Bullseye & Buster:(5.0.8-6) transitional dummy package www

  • fsl-core

    Bullseye & Buster:(5.0.8-6) metapackage for the latest version of FSL www

  • ftools-fv

    Bullseye:(5.5.2+dfsg-1) Buster:(5.5+dfsg-2) Tool for viewing and editing FITS format files www

  • ftools-pow

    Bullseye:(5.5.2+dfsg-1) Buster:(5.5+dfsg-2) Curve plotting and image display interface tool www

  • funtools

    Bullseye & Buster:(1.4.7-4) Minimal buy-in FITS utility package www

  • fxt-tools

    Bullseye:(0.3.13-1) Buster:(0.3.8-2) Multithreaded tracing library www
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  • G

  • g3data

    Bullseye:(1:1.5.3-3+b1) Buster:(1:1.5.3-2.1) extract data from scanned graphs www

  • gabedit

    Bullseye:(2.5.1~20200828-1) Buster:(2.4.8-3+b1) graphical user interface to Ab Initio packages www

  • galileo

    Bullseye:(0.5.1-7) Buster:(0.5.1-6) Utility to securely synchronize a Fitbit device with the Fitbit web service www

  • galileo-daemon

    Bullseye:(0.5.1-7) Buster:(0.5.1-6) Utility to securely synchronize a Fitbit device - daemon www

  • gamgi

    Bullseye:(0.17.3-3) Buster:(0.17.3-2) General Atomistic Modelling Graphic Interface (GAMGI) www

  • gamgi-data

    Bullseye:(0.17.3-3) Buster:(0.17.3-2) General Atomistic Modelling Graphic Interface (data) www

  • garli

    Bullseye:(2.1-4) Buster:(2.1-3) phylogenetic analysis of molecular sequence data using maximum-likelihood www

  • garli-examples

    Bullseye:(2.1-4) Buster:(2.1-3) phylogenetic analysis of molecular sequence data (examples) www

  • garli-mpi

    Bullseye:(2.1-4) Buster:(2.1-3) phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI) www

  • garlic

    Bullseye & Buster:(1.6-3) visualization program for biomolecules www

  • gasic

    Bullseye:(0.0.r19-7) genome abundance similarity correction www

  • gasic-examples

    Bullseye:(0.0.r19-7) genome abundance similarity correction (example data) www

  • gatb-core-testdata

    Bullseye:(1.4.2+dfsg-6) Buster:(1.4.1+git20181225.44d5a44+dfsg-3) Genome Analysis Toolbox with de-Bruijn graph (test data) www

  • gausssum

    Bullseye:(3.0.2-2) Buster:(3.0.2-1) parse and display Gaussian, GAMESS, and etc's output www

  • gazebo-common

    Bullseye:(11.1.0+dfsg-6) Open Source Robotics Simulator - Shared files www

  • gazebo9

    Bullseye:(11.1.0+dfsg-6) transitional package www

  • gazebo9-common

    Bullseye:(11.1.0+dfsg-6) Buster:(9.6.0-1) transitional package www

  • gazebo9-plugin-base

    Bullseye:(11.1.0+dfsg-6) transitional package www

  • gbrowse

    Bullseye:(2.56+dfsg-8) Buster:(2.56+dfsg-4) GMOD Generic Genome Browser www

  • gbrowse-calign

    Bullseye:(2.56+dfsg-8+b1) Buster:(2.56+dfsg-4+b1) CAlign helper www

  • gbrowse-data

    Bullseye:(2.56+dfsg-8) Buster:(2.56+dfsg-4) Sample data to use GBrowse www

  • gbutils

    Bullseye:(6.0-1) Buster:(5.7.1-1) utilities for command line econometrics www

  • gchempaint

    Bullseye:(0.14.17-6) Buster:(0.14.17-1.1) 2D chemical structures editor for the GNOME2 desktop www

  • gcrystal

    Bullseye:(0.14.17-6) Buster:(0.14.17-1.1) lightweight crystal structures visualizer www

  • gcu-bin

    Bullseye:(0.14.17-6) Buster:(0.14.17-1.1) GNOME chemistry utils (helper applications) www

  • gcx

    Bullseye:(1.3-1.1+b2) Buster:(1.3-1.1) astronomical image processing and photometry gtk+ application www

  • gdal-bin

    Bullseye:(3.2.2+dfsg-2+deb11u2) Buster:(2.4.0+dfsg-1+deb10u1) Geospatial Data Abstraction Library - Utility programs www

  • gdal-data

    Bullseye:(3.2.2+dfsg-2+deb11u2) Buster:(2.4.0+dfsg-1+deb10u1) Geospatial Data Abstraction Library - Data files www

  • gdis

    Bullseye:(0.90-6) Buster:(0.90-5) molecular and crystal model viewer www

  • gdis-data

    Bullseye:(0.90-6) Buster:(0.90-5) molecular and crystal model viewer (data files) www

  • gdl-astrolib

    Bullseye:(2020.10.29+dfsg-3) Buster:(2018.08.10+dfsg-1) Low-level astronomy software for GDL www

  • gdl-coyote

    Bullseye:(2019.08.19-1) Buster:(2019.01.29-1) GDL library from D. Fannings IDL courses www

  • gdl-mpfit

    Bullseye:(1.85+2017.01.03-4) Buster:(1.85+2017.01.03-3) Robust non-linear least squares curve fitting for GDL www

  • gdpc

    Bullseye:(2.2.5-11) Buster:(2.2.5-9) visualiser of molecular dynamic simulations www

  • gdpc-examples

    Bullseye:(2.2.5-11) Buster:(2.2.5-9) example files for the gdpc program www

  • gelemental

    Bullseye:(2.0.0-1) Buster:(1.2.0-12) Periodic Table viewer www

  • gemma

    Bullseye:(0.98.4+dfsg-4) Buster:(0.98.1+dfsg-1) Genome-wide Efficient Mixed Model Association www

  • gemma-doc

    Bullseye:(0.98.4+dfsg-4) Buster:(0.98.1+dfsg-1) Example folder for GEMMA www

  • genometester

    Bullseye:(4.0+git20200511.91cecb5+dfsg-1) Buster:(4.0+git20180508.a9c14a6+dfsg-1) toolkit for performing set operations on k-mer lists www

  • genomethreader

    Bullseye:(1.7.3+dfsg-5) software tool to compute gene structure predictions www

  • genometools

    Bullseye:(1.6.1+ds-3) Buster:(1.5.10+ds-3) versatile genome analysis toolkit www

  • genometools-common

    Bullseye:(1.6.1+ds-3) Buster:(1.5.10+ds-3) shared data files for GenomeTools www

  • gentle

    Bullseye:(1.9+cvs20100605+dfsg1-9) Buster:(1.9+cvs20100605+dfsg1-7+b1) suite to plan genetic cloning www

  • geographiclib-tools

    Bullseye:(1.51-1) Buster:(1.49-4) C++ library to solve some geodesic problems -- tools www

  • geotiff-bin

    Bullseye:(1.6.0-1) Buster:(1.4.3-1) GeoTIFF (geografic enabled TIFF) library -- tools www

  • gerris

    Bullseye:(20131206+dfsg-19+b7) Buster:(20131206+dfsg-18+b27) Fluid Flow Solver www

  • getdata

    Bullseye:(0.2-4) Buster:(0.2-3) management of external databases www

  • gff2aplot

    Bullseye:(2.0-13) Buster:(2.0-11) pair-wise alignment-plots for genomic sequences in PostScript www

  • gff2ps

    Bullseye:(0.98l-4) Buster:(0.98l-2) produces PostScript graphical output from GFF-files www

  • gffread

    Bullseye:(0.12.1-4) GFF/GTF format conversions, region filtering, FASTA sequence extraction www

  • gfsview

    Bullseye:(20121130+dfsg-7) Buster:(20121130+dfsg-6) graphical viewer for Gerris simulation files www

  • gfsview-batch

    Bullseye:(20121130+dfsg-7) Buster:(20121130+dfsg-6) batch-version of viewer for Gerris simulation files www

  • gftl-dev

    Bullseye:(1.3.0+is-really-1.2.7-1) Containers and iterators for Fortran www

  • gftl-shared-dev

    Bullseye:(1.0.7-2) Common gFTL containers of Fortran intrinsic types www

  • ggd-utils

    Bullseye:(0.0.7+ds-3) programs for use in ggd www

  • ghkl

    Bullseye:(5.0.0.2661-1+b1) Buster:(5.0.0.2456-1) diffractometer computation control application www

  • ghmm

    Bullseye:(0.9~rc3-4) Buster:(0.9~rc3-2) General Hidden-Markov-Model library - tools www

  • giella-core

    Bullseye:(0.1.1~r129227+svn121148-2.1) Buster:(0.1.1~r129227+svn121148-2) GTCORE files for building Giellatekno language packages www

  • giella-sme

    Bullseye & Buster:(0.0.20150917~r121176-3) Giellatekno single language data for North Saami www

  • giella-sme-dev

    Bullseye & Buster:(0.0.20150917~r121176-3) Giellatekno single language data for North Saami (dev extras) www

  • ginga

    Bullseye:(3.1.0-1) Buster:(2.7.2-2) Astronomical image viewer www

  • glam2

    Bullseye:(1064-9) Buster:(1064-5) gapped protein motifs from unaligned sequences www

  • gliese

    Bullseye & Buster:(3.0.95-2) stellar data set from the Third Catalogue of Nearby Stars www

  • glueviz

    Bullseye:(1.0.1+dfsg-1) Buster:(0.14.1+dfsg-1) Linked data visualization www

  • gmap

    Bullseye:(2021-02-22+ds-1) spliced and SNP-tolerant alignment for mRNA and short reads www

  • gmt

    Bullseye:(6.1.1+dfsg-1+b1) Buster:(5.4.5+dfsg-2) Generic Mapping Tools www

  • gmt-common

    Bullseye:(6.1.1+dfsg-1) Buster:(5.4.5+dfsg-2) Generic Mapping Tools - Architecture-independent files www

  • gmt-dcw

    Bullseye:(1.1.4-3) Buster:(1.1.4-2) Digital Chart of the World (DCW) for GMT www

  • gmt-gshhg

    Bullseye:(2.3.7-5) Buster:(2.3.7-4) Global Self-consistent Hierarchical High-resolution Geography (GSHHG) www

  • gmt-gshhg-full

    Bullseye:(2.3.7-5) Buster:(2.3.7-4) Full resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-high

    Bullseye:(2.3.7-5) Buster:(2.3.7-4) High resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-low

    Bullseye:(2.3.7-5) Buster:(2.3.7-4) Low resolution coastlines for the Generic Mapping Tools www

  • gnuastro

    Bullseye:(0.14-1) Buster:(0.8-1) GNU Astronomy Utilities programs www

  • gpaw

    Bullseye:(21.1.0-1) Buster:(1.5.1-1) DFT and beyond within the projector-augmented wave method www

  • gpaw-data

    Bullseye & Buster:(0.9.20000-2) gpaw datasets/setups www

  • gperiodic

    Bullseye & Buster:(3.0.3-1) periodic table application www

  • gpx

    Bullseye:(2.6.8-1) Buster:(2.5.2-3) Gcode to x3g conversion post processor www

  • grabix

    Bullseye:(0.1.7-2) Buster:(0.1.7-1) wee tool for random access into BGZF files www

  • graphlan

    Bullseye:(1.1.3-2) Buster:(1.1.3-1) circular representations of taxonomic and phylogenetic trees www

  • grass

    Bullseye:(7.8.5-1+deb11u1) Buster:(7.6.0-1) Geographic Resources Analysis Support System (GRASS GIS) www

  • grass-core

    Bullseye:(7.8.5-1+deb11u1) Buster:(7.6.0-1+b1) GRASS GIS core components www

  • grass-gui

    Bullseye:(7.8.5-1+deb11u1) Buster:(7.6.0-1+b1) GRASS GIS graphical user interfaces www

  • gravit

    Bullseye:(0.5.1+dfsg-5) Buster:(0.5.1+dfsg-3) visually stunning gravity simulator www

  • gravit-data

    Bullseye:(0.5.1+dfsg-5) Buster:(0.5.1+dfsg-3) data files for Gravit www

  • gri

    Bullseye:(2.12.27-1.1~deb11u1) Buster:(2.12.26-1+b1) a language for scientific illustration www

  • grinder

    Bullseye:(0.5.4-6) Buster:(0.5.4-5) Versatile omics shotgun and amplicon sequencing read simulator www

  • gromacs

    Bullseye:(2020.6-2) Buster:(2019.1-1) Molecular dynamics simulator, with building and analysis tools www

  • gromacs-data

    Bullseye:(2020.6-2) Buster:(2019.1-1) GROMACS molecular dynamics sim, data and documentation www

  • gromacs-mpich

    Bullseye:(2020.6-2) Buster:(2019.1-1) Molecular dynamics sim, binaries for MPICH parallelization www

  • gromacs-openmpi

    Bullseye:(2020.6-2) Buster:(2019.1-1) Molecular dynamics sim, binaries for OpenMPI parallelization www

  • gsort

    Bullseye:(0.1.4-3) sort genomic data www

  • gubbins

    Bullseye:(2.3.5-1) phylogenetic analysis of genome sequences www

  • gvb

    Bullseye:(1.4-1.1) Buster:(1.4-1) visual simulator of 1 and 2-dimensional vibrations www

  • gwama

    Bullseye:(2.2.2+dfsg-4) Buster:(2.2.2+dfsg-2) Genome-Wide Association Meta Analysis www

  • gwyddion

    Bullseye:(2.57-1) Buster:(2.52-1) Scanning Probe Microscopy visualization and analysis tool www

  • gwyddion-common

    Bullseye:(2.57-1) Buster:(2.52-1) architecture-independent files for Gwyddion SPM analysis tool www

  • gyoto

    Bullseye:(1.4.4-3) Buster:(1.3.1-1) General relativistic geodesic integration and ray-tracing www

  • gyoto-bin

    Bullseye:(1.4.4-3+b6) Buster:(1.3.1-1+b1) General relativistic ray-tracing command-line interface www
  • Back to top

  • H

  • h5utils

    Bullseye:(1.13.1-4) Buster:(1.13.1-3+b1) HDF5 files visualization tools www

  • harminv

    Bullseye & Buster:(1.4.1-2) extraction of complex frequencies and amplitudes from time series www

  • harvest-tools

    Bullseye:(1.3-6) Buster:(1.3-4) archiving and postprocessing for reference-compressed genomic multi-alignments www

  • hdf-compass

    Bullseye:(0.7~b8-3) Buster:(0.6.0-1) viewer for HDF5 and related formats www

  • hdf5-helpers

    Bullseye:(1.10.6+repack-4+deb11u1) Buster:(1.10.4+repack-10) HDF5 - Helper tools www

  • hdf5-tools

    Bullseye:(1.10.6+repack-4+deb11u1) Buster:(1.10.4+repack-10) HDF5 - Runtime tools www

  • herisvm

    Bullseye:(0.9.0-2) Buster:(0.8.2-1) machine learning tools for classification algorithms www

  • hfst

    Bullseye:(3.15.1-2+b3) Buster:(3.15.0-1.1~deb10u1) Helsinki Finite-State Transducer Technology www

  • hfst-ospell

    Bullseye:(0.5.2-1) Buster:(0.5.0-2) Spell checker library and tool based on HFST www

  • hhsuite

    Bullseye:(3.3.0+ds-4) sensitive protein sequence searching based on HMM-HMM alignment www

  • hhsuite-data

    Bullseye:(3.3.0+ds-4) Buster:(3.0~beta3+dfsg-3) sensitive protein sequence searching based on HMM-HMM alignment (data) www

  • hilive

    Bullseye:(2.0a-3+b1) Buster:(1.1-2) realtime alignment of Illumina reads www

  • hinge

    Bullseye:(0.5.0-6) Buster:(0.5.0-4) long read genome assembler based on hinging www

  • hisat2

    Bullseye:(2.2.1-2) graph-based alignment of short nucleotide reads to many genomes www

  • hmmer

    Bullseye & Buster:(3.1b2-1) profile hidden Markov models for protein sequence analysis www

  • hmmer2

    Bullseye:(2.3.2+dfsg-7) Buster:(2.3.2+dfsg-6) profile hidden Markov models for protein sequence analysis www

  • hodie

    Bullseye & Buster:(1.5.0-1) prints the date in Latin www

  • horae

    Bullseye & Buster:(071~svn537-2.1) interactive graphical processing and analysis of EXAFS data www

  • hpcc

    Bullseye:(1.5.0-2) Buster:(1.5.0-1+b2) HPC Challenge benchmark www

  • hts-nim-tools

    Bullseye:(0.2.1-1) tools biological sequences: bam-filter, count-reads, vcf-check www

  • hyantesite

    Bullseye & Buster:(1.3.0-1.1) geomatic tool to compute neighbourhood population potential www

  • hyphy-common

    Bullseye:(2.5.28+dfsg-3) Buster:(2.3.14+dfsg-1) Hypothesis testing using Phylogenies (common files) www

  • hyphy-mpi

    Bullseye:(2.5.28+dfsg-3) Buster:(2.3.14+dfsg-1) Hypothesis testing using Phylogenies (MPI version) www

  • hyphy-pt

    Bullseye:(2.5.28+dfsg-3) Buster:(2.3.14+dfsg-1) Hypothesis testing using Phylogenies (pthreads version) www
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  • I

  • idba

    Bullseye:(1.1.3-7) Buster:(1.1.3-3) iterative De Bruijn Graph short read assemblers www

  • idba-extra

    Bullseye:(1.1.3-7) iterative De Bruijn Graph short read assemblers (extra tools) www

  • idseq-bench

    Bullseye:(0.0~git20200902.8241a9a-1) Benchmark generator for the IDseq Portal www

  • igdiscover

    Bullseye:(0.11-3) analyzes antibody repertoires to find new V genes www

  • igor

    Bullseye:(1.4.0+dfsg-2) Buster:(1.3.0+dfsg-1) infers V(D)J recombination processes from sequencing data www

  • igv

    Bullseye:(2.6.3+dfsg-3) Buster:(2.3.90+dfsg-1) Integrative Genomics Viewer www

  • iitii

    Bullseye:(0.0+git20191030.85209e0-2) Implicit Interval Tree with Interpolation Index www

  • imagej

    Bullseye:(1.53g-2) Buster:(1.52j-1) Image processing program with a focus on microscopy images www

  • imview

    Bullseye:(1.1.9h-3) Buster:(1.1.9h-1) Image viewing and analysis application www

  • indelible

    Bullseye:(1.03-5) Buster:(1.03-4) powerful and flexible simulator of biological evolution www

  • indigo-utils

    Bullseye:(1.2.3-3.1) Buster:(1.2.3-1) Organic Chemistry Toolkit Utilities www

  • infernal

    Bullseye & Buster:(1.0.2-2) inference of RNA secondary structural alignments www

  • inhomog

    Bullseye:(0.1.9.2-1+b1) Buster:(0.1.9.2-1) kinematical backreaction and average scale factor evolution www

  • inkscape-speleo

    Bullseye:(1.8-4) Inkscape plugin to help draw surveys www

  • inkscape-survex-export

    Bullseye:(2.0-1) Inkscape plugin to digitise printed surveys www

  • insilicoseq

    Bullseye:(1.5.2-1) sequencing simulator producing realistic Illumina reads www

  • ipig

    Bullseye:(0.0.r5-4) Buster:(0.0.r5-3) integrating PSMs into genome browser visualisations www

  • iraf

    Bullseye:(2.16.1+2018.11.01-6+b2) Buster:(2.16.1+2018.11.01-2) Image Reduction and Analysis Facility www

  • iraf-dev

    Bullseye:(2.16.1+2018.11.01-6+b2) Buster:(2.16.1+2018.11.01-2) Image Reduction and Analysis Facility (development files) www

  • iraf-fitsutil

    Bullseye:(2018.07.06-4+b1) Buster:(2018.07.06-3+b1) FITS utilities for IRAF

  • iraf-mscred

    Bullseye:(5.05+2018.07.09-1+b3) Buster:(5.05+2018.07.09-1+b1) CCD mosaic reduction package for IRAF

  • iraf-noao

    Bullseye:(2.16.1+2018.11.01-6+b2) Buster:(2.16.1+2018.11.01-2) IRAF NOAO data reduction package www

  • iraf-noao-dev

    Bullseye:(2.16.1+2018.11.01-6+b2) Buster:(2.16.1+2018.11.01-2) IRAF NOAO data reduction package (development files) www

  • iraf-rvsao

    Bullseye:(2.8.3-1+b3) Buster:(2.8.3-1+b1) IRAF package to obtain radial velocities from spectra www

  • iraf-sptable

    Bullseye:(1.0~pre20180612-2+b1) Buster:(1.0~pre20180612-1+b1) IRAF package for Tabular Spectra

  • iraf-wcstools

    Bullseye:(3.9.6-1) Buster:(3.9.5-3) Handle the WCS of a FITS image (IRAF package) www

  • irstlm

    Bullseye & Buster:(6.00.05-2) IRST Language Modeling Toolkit www

  • ismrmrd-schema

    Bullseye:(1.4.2.1-6) Buster:(1.4.0-1) schema for ISMRMRD www

  • iso2mesh-demos

    Bullseye:(1.9.6+ds-5) sample files and demo scripts for Iso2Mesh toolbox www

  • iso2mesh-tools

    Bullseye:(1.9.6+ds-5) 3D mesh generation and repairing utilities www

  • iva

    Bullseye:(1.0.9+ds-11) Buster:(1.0.9+ds-6) iterative virus sequence assembler www
  • Back to top

  • J

  • jaligner

    Bullseye:(1.0+dfsg-7) Buster:(1.0+dfsg-6) Smith-Waterman algorithm with Gotoh's improvement www

  • jalview

    Bullseye:(2.11.1.3+dfsg2-5) Buster:(2.7.dfsg-5) multiple alignment editor www

  • jblas

    Bullseye:(1.2.4-3) Buster:(1.2.4-2) fast linear algebra library for Java www

  • jellyfish

    Bullseye:(2.3.0-10) count k-mers in DNA sequences www

  • jellyfish-examples

    Bullseye:(2.3.0-10) count k-mers in DNA sequences (examples for testing) www

  • jellyfish1

    Bullseye:(1.1.11-5) Buster:(1.1.11-4) count k-mers in DNA sequences www

  • jemboss

    Bullseye:(6.6.0+dfsg-9) Buster:(6.6.0+dfsg-7) graphical user interface to EMBOSS www

  • jmodeltest

    Bullseye:(2.1.10+dfsg-10) Buster:(2.1.10+dfsg-7) HPC selection of models of nucleotide substitution www

  • jmol

    Bullseye & Buster:(14.6.4+2016.11.05+dfsg1-4) Molecular Viewer www

  • jnifti-demos

    Bullseye:(0.6-2) sample files and demo scripts for JNIfTI toolbox www

  • jsamp

    Bullseye:(1.3.7-1) Buster:(1.3.5-1) Java Simple Application Messaging Protocol tool for VO www

  • jube

    Bullseye:(2.4.1-1) Buster:(2.2.2-1) JUBE Benchmarking Environment www

  • julia

    Bullseye:(1.5.3+dfsg-3+rpi1) Buster:(1.0.3+dfsg-4+rpi1) high-performance programming language for technical computing www

  • julia-common

    Bullseye:(1.5.3+dfsg-3+rpi1) Buster:(1.0.3+dfsg-4+rpi1) high-performance programming language for technical computing (common files) www

  • julia-factcheck

    Bullseye & Buster:(0.1.2-2) Midje-like testing for Julia www

  • jupyter-notebook

    Bullseye:(6.2.0-1) Buster:(5.7.8-1) Jupyter interactive notebook www
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  • K

  • kalign

    Bullseye:(1:3.3-1) Buster:(1:2.03+20110620-5) Global and progressive multiple sequence alignment www

  • kallisto

    Bullseye:(0.46.2+dfsg-2) near-optimal RNA-Seq quantification www

  • kallisto-examples

    Bullseye:(0.46.2+dfsg-2) near-optimal RNA-Seq quantification (example data) www

  • kalzium

    Bullseye:(4:20.12.0-1) Buster:(4:17.08.3-1+b1) periodic table and chemistry tools www

  • kalzium-data

    Bullseye:(4:20.12.0-1) Buster:(4:17.08.3-1) data files for Kalzium www

  • kaptive

    Bullseye:(0.7.3-3) obtain information about K and O types for Klebsiella genome assemblies www

  • kaptive-data

    Bullseye:(0.7.3-3) reference data for kaptive for Klebsiella genome assemblies www

  • kaptive-example

    Bullseye:(0.7.3-3) example data for kaptive for Klebsiella genome assemblies www

  • khmer-common

    Bullseye:(2.1.2+dfsg-8) Buster:(2.1.2+dfsg-6) common files for the khmer project tools www

  • kineticstools

    Bullseye:(0.6.1+git20200729.e3723e0+dfsg-1) Buster:(0.6.1+git20180425.27a1878-2) detection of DNA modifications www

  • kineticstools-data

    Bullseye:(0.6.1+git20200729.e3723e0+dfsg-1) Buster:(0.6.1+git20180425.27a1878-2) detection of DNA modifications -- data files www

  • king-probe

    Bullseye:(2.16.160404+git20200121.9b198c1-3) Buster:(2.16.160404+git20180613.a09b012-1) Evaluate and visualize protein interatomic packing www

  • kleborate-examples

    Bullseye:(2.0.1-1) tool to screen Klebsiella genome assemblies (example data) www

  • klustakwik

    Bullseye:(3.0.2+ds-1) Buster:(2.0.1-1) automatic sorting of the samples (spikes) into clusters www

  • kma

    Bullseye:(1.3.10-1) mapping genomic sequences to raw reads directly against redundant databases www

  • kmc

    Bullseye:(3.1.1+dfsg-3) Buster:(2.3+dfsg-7) count kmers in genomic sequences www

  • kmer

    Bullseye:(0~20150903+r2013-8) Buster:(0~20150903+r2013-6) suite of tools for DNA sequence analysis www

  • kmer-examples

    Bullseye:(0~20150903+r2013-8) Buster:(0~20150903+r2013-6) sample data for kmer suite of tools for DNA sequence analysis www

  • kmerresistance

    Bullseye:(2.2.0-2) correlates mapped genes with the predicted species of WGS samples www

  • konclude

    Bullseye:(0.7.0+1137~dfsg-1) Buster:(0.6.2~dfsg-6) tableau-based description logic reasoner for the semantic web www

  • kraken

    Bullseye:(1.1.1-2) Buster:(1.1-3) assigning taxonomic labels to short DNA sequences www

  • kraken2

    Bullseye:(2.1.1-1) taxonomic classification system using exact k-mer matches www

  • kst

    Bullseye:(2.0.8-4+b1) Buster:(2.0.8-3+b1) scientific data plotting tool www

  • kstars

    Bullseye:(5:3.4.3-1+b2) Buster:(5:3.0.0-1) desktop planetarium, observation planning and telescope control www

  • kstars-data

    Bullseye:(5:3.4.3-1) Buster:(5:3.0.0-1) data files for KStars desktop planetarium www

  • kstars-data-extra-tycho2

    Bullseye & Buster:(1.1r1-9.1) Tycho-2 star catalog for KStars

  • kxterm

    Bullseye & Buster:(20061220+dfsg3-4.4) CERNLIB data analysis suite - KUIP terminal emulator www
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  • L

  • lagan

    Bullseye:(2.0-6) Buster:(2.0-3) highly parametrizable pairwise global genome sequence aligner www

  • lamarc

    Bullseye:(2.1.10.1+dfsg-5) Buster:(2.1.10.1+dfsg-3) Likelihood Analysis with Metropolis Algorithm using Random Coalescence www

  • lambda-align

    Bullseye:(1.0.3-6) Buster:(1.0.3-5) Local Aligner for Massive Biological DatA www

  • lambda-align2

    Bullseye & Buster:(2.0.0-6) Local Aligner for Massive Biological DatA - v2 www

  • lammps

    Bullseye:(20210122~gita77bb+ds1-2) Buster:(0~20181211.gitad1b1897d+dfsg1-2) Molecular Dynamics Simulator www

  • last-align

    Bullseye:(1179-1) Buster:(963-2) genome-scale comparison of biological sequences www

  • lastz

    Bullseye:(1.04.03-4) pairwise aligning DNA sequences www

  • lastz-examples

    Bullseye:(1.04.03-4) pairwise aligning DNA sequences (examples and test scripts) www

  • lbt

    Bullseye:(1.2.2-7) Buster:(1.2.2-6) converts from LTL formulas to Büchi automata www

  • leaff

    Bullseye:(0~20150903+r2013-8+b1) Buster:(0~20150903+r2013-6+b3) biological sequence library utilities and applications www

  • lefse

    Bullseye:(1.0.8-3) Buster:(1.0.8-2) determine features of organisms, clades, taxonomic units, genes www

  • libadios-bin

    Bullseye:(1.13.1-28.2) Buster:(1.13.1-16) ADIOS Adaptable IO system for simulations - binaries www

  • libadios-examples

    Bullseye:(1.13.1-28.2) Buster:(1.13.1-16) Examples for the ADIOS Adaptable IO system www

  • libatlas-ecmwf-utils

    Bullseye:(0.23.0-1) Numerical weather prediction and climate modelling library - utilities www

  • libball1.5-data

    Bullseye:(1.5.0+git20180813.37fc53c-6) Buster:(1.5.0+git20180813.37fc53c-3) Biochemical Algorithms Library (data files) www

  • libbio-db-hts-perl

    Bullseye:(3.01-3+b2) Perl interface to the HTS library www

  • libbio-tools-phylo-paml-perl

    Bullseye:(1.7.3-3) Buster:(1.7.3-2) Bioperl interface to the PAML suite www

  • libbio-tools-run-alignment-clustalw-perl

    Bullseye:(1.7.4-2) Buster:(1.7.4-1) Bioperl interface to Clustal W www

  • libbio-tools-run-alignment-tcoffee-perl

    Bullseye:(1.7.4-2) Buster:(1.7.4-1) Bioperl interface to T-Coffee www

  • libclhep2.1v5

    Bullseye & Buster:(2.1.4.1+dfsg-1) CLHEP: A Class Library for High Energy Physics www

  • libdlpack-dev

    Bullseye:(0.0~git20200217.3ec0443-2) Open In Memory Tensor Structure www

  • libeccodes-data

    Bullseye:(2.20.0-1) Buster:(2.12.0-1) GRIB and BUFR enecoding/encoding software library - data www

  • libeckit-utils

    Bullseye:(1.15.4-1) C++ toolkit for ECMWF tools and applications - development files www

  • libej0

    Bullseye:(4.8.8+repack-2) Buster:(4.4.4+dfsg-4) hardware & software framework for developing science experiments www

  • libfckit-utils

    Bullseye:(0.9.0-6) Library Fortran toolkit for interoperating Fortran with C/C++ www

  • libgeotiff-epsg

    Bullseye & Buster:(1.4.3-1) GeoTIFF library -- EPSG Geodetic Parameter Dataset www

  • libgfsgl0

    Bullseye:(20121130+dfsg-7) Buster:(20121130+dfsg-6) graphical viewer for Gerris simulation files. Shared library www

  • libghemical-data

    Bullseye:(3.0.0-4.3) Buster:(3.0.0-4.2) Molecular Modelling Library (data files) www

  • libgrib-api-data

    Bullseye & Buster:(1.8.0.1-1) grib_api definition files www

  • libhdf5-jni

    Bullseye:(1.10.6+repack-4+deb11u1) Buster:(1.10.4+repack-10) native library used by libhdf5-java www

  • liblammps-dev

    Bullseye:(20210122~gita77bb+ds1-2) Molecular Dynamics Simulator (dev files) www

  • liblammps0

    Bullseye:(20210122~gita77bb+ds1-2) Molecular Dynamics Simulator (shared library) www

  • liblemon-utils

    Bullseye:(1.3.1+dfsg-4) Buster:(1.3.1+dfsg-2) Library for Efficient Modeling and Optimization in Networks (utilities) www

  • libliggghts3

    Bullseye:(3.8.0+repack1-7) Buster:(3.8.0+repack1-4) Open Source DEM Particle Simulation Software. Shared library www

  • liblinear-tools

    Bullseye:(2.3.0+dfsg-5) Buster:(2.1.0+dfsg-4) Standalone applications for LIBLINEAR www

  • liblorene-debian1

    Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) Buster:(0.0.0~cvs20161116+dfsg-1+b2) liblorene shared library www

  • liblorene-export-debian0

    Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) Buster:(0.0.0~cvs20161116+dfsg-1+b2) liblorene_export shared library www

  • liblorenef77-debian1

    Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) Buster:(0.0.0~cvs20161116+dfsg-1+b2) liblorenef77 shared library www

  • libmed-tools

    Bullseye:(4.1.0+repack-2+b1) Buster:(4.0.0+repack-7) Runtime tools to handle MED files www

  • libmstoolkit-tools

    Bullseye:(82-7) Buster:(82-6) libraries for manipulating mass spectrometry data - tools www

  • libncarg-bin

    Bullseye:(6.6.2-7) Buster:(6.5.0-2) NCAR command-language library - development tools www

  • libncarg-data

    Bullseye:(6.6.2-7) Buster:(6.5.0-2) NCAR command-language library - Data www

  • libocas-tools

    Bullseye:(0.97+dfsg-6) Buster:(0.97+dfsg-5) Standalone applications implementing the OCAS solver www

  • libonnx-dev

    Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (dev) www

  • libonnx-testdata

    Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (test data) www

  • libonnx1

    Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (libs) www

  • libonnxifi

    Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (ONNXIFI) www

  • libopenfoam

    Bullseye:(1912.200626-1) Buster:(1812+dfsg1-2) Open source toolbox for Computational Fluid Dynamics (CFD) - libraries www

  • libpluto-jpl-eph-dev

    Bullseye & Buster:(0.0~git20180228-1.1) development files to interact with JPL ephemeres data www

  • libpluto-lunar-dev

    Bullseye & Buster:(0.0~git20180825.e34c1d1-1) development files for astronomical Lunar library www

  • libpwiz-tools

    Bullseye:(3.0.18342-4) Buster:(3.0.18342-2) ProteoWizard command line tools www

  • libqgis-customwidgets

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) QGIS custom widgets for Qt Designer www

  • librsl1

    Bullseye & Buster:(1.43-1.2) TRMM Radar Software Library www

  • libsilo-bin

    Bullseye:(4.10.2.real-9) Buster:(4.10.2.real-5+b1) Utilities to manipulate libsilo files www

  • libssm-bin

    Bullseye:(1.4.0-2) Buster:(1.4.0-1) macromolecular superposition library - binaries www

  • libstxxl1v5

    Bullseye & Buster:(1.4.1-3) C++ Standard Template Library for extra large datasets www

  • libvcflib-tools

    Bullseye:(1.0.2+dfsg-2) C++ library for parsing and manipulating VCF files (tools) www

  • libvdjtools-java

    Bullseye:(1.2.1+git20190311-5) Java library of vdjtools www

  • libwannier90-dev

    Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - development library www

  • libxy-bin

    Bullseye:(1.6-1) Buster:(1.3-1.1) xylib - utilities www

  • liggghts

    Bullseye:(3.8.0+repack1-7) Buster:(3.8.0+repack1-4) Open Source DEM Particle Simulation Software. www

  • lighter

    Bullseye:(1.1.2-5) fast and memory-efficient sequencing error corrector www

  • litl-tools

    Bullseye:(0.1.9-12) Buster:(0.1.9-4) Lightweight Trace Library - tools www

  • logol

    Bullseye:(1.7.9-3) Buster:(1.7.9-1) Pattern matching tool using Logol language www

  • logol-bin

    Bullseye:(1.7.9-3) Buster:(1.7.9-1+b1) Pattern matching tool using Logol language www

  • loki

    Bullseye:(2.4.7.4-10) Buster:(2.4.7.4-8) MCMC linkage analysis on general pedigrees

  • lorene

    Bullseye & Buster:(0.0.0~cvs20161116+dfsg-1) framework for numerical relativity www

  • lorene-codes-src

    Bullseye & Buster:(0.0.0~cvs20161116+dfsg-1) source files of LORENE-based codes www

  • ltrsift

    Bullseye:(1.0.2-9+b1) Buster:(1.0.2-8) postprocessing and classification of LTR retrotransposons www

  • lttoolbox

    Bullseye:(3.5.3-1) Buster:(3.5.0-3) Apertium lexical processing modules and tools www

  • lttoolbox-dev

    Bullseye:(3.5.3-1) Buster:(3.5.0-3) Development tools and library for lttoolbox www

  • lucy

    Bullseye:(1.20-3) Buster:(1.20-1) DNA sequence quality and vector trimming tool www

  • lumpy-sv

    Bullseye:(0.3.1+dfsg-5) general probabilistic framework for structural variant discovery www

  • lumpy-sv-examples

    Bullseye:(0.3.1+dfsg-5) general probabilistic framework for structural variant discovery (data) www

  • lutefisk

    Bullseye:(1.0.7+dfsg-7) Buster:(1.0.7+dfsg-4) de novo interpretation of peptide CID spectra www

  • lxi-tools

    Bullseye:(1.21-1+b1) Buster:(1.21-1) LAN eXtensions for Instrumentation (LXI) software interface www
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  • M

  • macs

    Bullseye:(2.2.7.1-3+b1) Buster:(2.1.2.1-1) Model-based Analysis of ChIP-Seq on short reads sequencers www

  • maffilter

    Bullseye:(1.3.1+dfsg-2) Buster:(1.3.1+dfsg-1) process genome alignment in the Multiple Alignment Format www

  • maffilter-examples

    Bullseye:(1.3.1+dfsg-2) Buster:(1.3.1+dfsg-1) process genome alignment in the Multiple Alignment Format (example data) www

  • mafft

    Bullseye:(7.475-1) Buster:(7.407-2) Multiple alignment program for amino acid or nucleotide sequences www

  • magics++

    Bullseye:(4.5.3-1) Buster:(3.3.1-1) Executables for the magics++ library www

  • mandelbrot-solver

    Bullseye:(3.2.1-2) Solver for Mandelbrot polynomials based on MPSolve www

  • mapdamage

    Bullseye:(2.2.1+dfsg-1) Buster:(2.0.9+dfsg-1) tracking and quantifying damage patterns in ancient DNA sequences www

  • mapsembler2

    Bullseye:(2.2.4+dfsg-4) Buster:(2.2.4+dfsg-3+b1) bioinformatics targeted assembly software www

  • maq

    Bullseye:(0.7.1-9) Buster:(0.7.1-8) maps short fixed-length polymorphic DNA sequence reads to reference sequences www

  • maqview

    Bullseye:(0.2.5-10) Buster:(0.2.5-9) graphical read alignment viewer for short gene sequences www

  • mash

    Bullseye:(2.2.2+dfsg-1+b1) Buster:(2.1+dfsg-2) fast genome and metagenome distance estimation using MinHash www

  • massxpert

    Bullseye:(6.0.2-1) polymer chemistry modelling and mass spectrometry data simulation (runtime) www

  • massxpert-data

    Bullseye:(6.0.2-1) polymer chemistry modelling and mass spectrometry data simulation (data) www

  • matlab-brain2mesh

    Bullseye:(0.7.9-2) automated brain tetrahedral mesh generation toolbox for MATLAB www

  • matlab-gdf

    Bullseye:(0.1.3-8) Buster:(0.1.2-2.1) IO library for the GDF -- Matlab interface www

  • matlab-iso2mesh

    Bullseye:(1.9.6+ds-5) 3D surface and volumetric mesh generator for MATLAB www

  • matlab-jnifti

    Bullseye:(0.6-2) fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB www

  • matlab-jsonlab

    Bullseye:(2.0-1.1) native JSON/UBJSON/MassagePack encoder/decoder for MATLAB www

  • matlab-zmat

    Bullseye:(0.9.8+ds-3) in-memory data compression for MATLAB www

  • maude

    Bullseye:(3.1-2) Buster:(2.7-2) high-performance logical framework www

  • mauve-aligner

    Bullseye:(2.4.0+4736-3) Buster:(2.4.0+4736-1+b4) multiple genome alignment www

  • mayavi2

    Bullseye:(4.7.1-2+b2) Buster:(4.5.0-1+b1) scientific visualization package for 2-D and 3-D data www

  • mbpoll

    Bullseye:(1.4.11+dfsg-2) command line utility to communicate with ModBus slave (RTU or TCP) www

  • mbt

    Bullseye:(3.6-3) Buster:(3.4-1) memory-based tagger-generator and tagger www

  • mbtserver

    Bullseye:(0.14-2) Buster:(0.12-1) Server extensions for the MBT tagger www

  • meep

    Bullseye:(1.17.1-1) Buster:(1.7.0-3) software package for FDTD simulation www

  • meep-mpi-default

    Bullseye:(1.17.1-2) Buster:(1.7.0-3) software package for FDTD simulation, parallel (OpenMPI) version www

  • meep-openmpi

    Bullseye:(1.17.1-2) Buster:(1.7.0-3) software package for FDTD simulation, parallel (OpenMPI) version www

  • melting

    Bullseye:(5.2.0-2) Buster:(5.2.0-1) compute the melting temperature of nucleic acid duplex www

  • merkaartor

    Bullseye:(0.18.4+ds-5+b2) Buster:(0.18.3+ds-5+b1) map editor for OpenStreetMap.org www

  • meryl

    Bullseye:(0~20150903+r2013-8+b1) Buster:(0~20150903+r2013-6+b3) in- and out-of-core kmer counting and utilities www

  • metaphlan2

    Bullseye:(2.9.22-1) Buster:(2.7.8-1) Metagenomic Phylogenetic Analysis www

  • metaphlan2-data

    Bullseye & Buster:(2.6.0+ds-4) data package for Metagenomic Phylogenetic Analysis www

  • metastudent

    Bullseye:(2.0.1-8) Buster:(2.0.1-6) predictor of Gene Ontology terms from protein sequence www

  • metastudent-data

    Bullseye:(2.0.1-7) Buster:(2.0.1-4) predictor of Gene Ontology terms from protein sequence - data files www

  • metastudent-data-2

    Bullseye:(1.0.0-5) Buster:(1.0.0-4) predictor of Gene Ontology terms from protein sequence - data #2 www

  • metview

    Bullseye:(5.10.2-1) Buster:(5.3.0-2) Interactive data visualization and analysis environment, www

  • metview-data

    Bullseye:(5.10.2-1) Buster:(5.3.0-2) Data needed for the Metview data analysis environment www

  • mhap

    Bullseye:(2.1.3+dfsg-3) Buster:(2.1.3+dfsg-2) locality-sensitive hashing to detect long-read overlaps www

  • mia-doctools

    Bullseye:(2.4.7-7) Buster:(2.4.6-4) Helper scripts for run-time document creation www

  • mia-tools

    Bullseye:(2.4.7-7) Buster:(2.4.6-4+b1) Command line tools for gray scale image processing www

  • mia-viewit

    Bullseye:(1.0.5-3) Buster:(1.0.5-2) Viewer program for 3D data sets created by using MIA www

  • mialmpick

    Bullseye:(0.2.15-1) Buster:(0.2.14-2) Tools for landmark picking in 3D volume data sets www

  • microbegps

    Bullseye:(1.0.0-5) Buster:(1.0.0-3) explorative taxonomic profiling tool for metagenomic data www

  • microbiomeutil

    Bullseye:(20101212+dfsg1-4) Buster:(20101212+dfsg1-2) Microbiome Analysis Utilities www

  • microbiomeutil-data

    Bullseye:(20101212+dfsg1-4) Buster:(20101212+dfsg1-2) Reference 16S sequences and NAST-alignments used by microbiomeutil tools www

  • microhope

    Bullseye:(4.8.8+repack-2) Buster:(4.4.4+dfsg-4) hardware & software framework to learn microcontrollers www

  • minc-tools

    Bullseye:(2.3.00+dfsg-6) Buster:(2.3.00+dfsg-3+b1) MNI medical image format tools www

  • mindthegap-examples

    Bullseye:(2.2.2-2) optional scripts and example resources for mindthegap www

  • minexpert2

    Bullseye:(7.4.1-1) MS^n mass spectrometric data visualization and mining (runtime) www

  • minia

    Bullseye & Buster:(1.6906-2) short-read biological sequence assembler www

  • miniasm

    Bullseye:(0.3+dfsg-2) Buster:(0.3+dfsg-1) ultrafast de novo assembler for long noisy DNA sequencing reads www

  • minimap

    Bullseye:(0.2-5) Buster:(0.2-4) tool for approximate mapping of long biosequences such as DNA reads www

  • minimap2

    Bullseye:(2.17+dfsg-12+b1) versatile pairwise aligner for genomic and spliced nucleotide sequences www

  • minisat

    Bullseye & Buster:(1:2.2.1-5) Fast and lightweight SAT solver www

  • minisat+

    Bullseye & Buster:(1.0-4) solver for pseudo-Boolean constraints www

  • mipe

    Bullseye:(1.1-9) Buster:(1.1-7) Tools to store PCR-derived data www

  • mira-assembler

    Bullseye:(4.9.6-5) Buster:(4.9.6-4) Whole Genome Shotgun and EST Sequence Assembler www

  • mira-rfam-12s-rrna

    Bullseye:(4.9.6-5) Buster:(4.9.6-4) extract of RFAM 12 rRNA database www

  • mirtop

    Bullseye:(0.4.23-2) annotate miRNAs with a standard mirna/isomir naming www

  • missfits

    Bullseye:(2.8.0-4) Buster:(2.8.0-2) Basic maintenance and packaging tasks on FITS files www

  • mitools

    Bullseye:(2.0.4-3) Buster:(2.0.3-1) view, convert and perform basic maths with medical image datasets www

  • mlv-smile

    Bullseye:(1.47-8) Buster:(1.47-6) Find statistically significant patterns in sequences www

  • mmb-common

    Bullseye:(3.2+dfsg-2) model the structure and dynamics of macromolecules (common files) www

  • mmseqs2

    Bullseye:(12-113e3+ds-3) ultra fast and sensitive protein search and clustering www

  • mmseqs2-examples

    Bullseye:(12-113e3+ds-3) optional resources for the mmseqs2 package www

  • mobyle-programs

    Bullseye & Buster:(5.1.2-3) program descriptions for the mobyle portal www

  • mobyle-tutorials

    Bullseye & Buster:(1.5.0-4) program tutorials for the mobyle portal www

  • mocassin

    Bullseye:(2.02.73.2-1) Buster:(2.02.73-1) MOnte CArlo SimulationS of Ionised Nebulae www

  • mocassin-benchmarks

    Bullseye:(2.02.73.2-1) Buster:(2.02.73-1) benchmarks for the photoionisation code MOCASSIN www

  • mocassin-data

    Bullseye:(2.02.73.2-1) Buster:(2.02.73-1) atomic and optical data for the photoionisation code MOCASSIN www

  • mocassin-examples

    Bullseye:(2.02.73.2-1) Buster:(2.02.73-1) Examples for the photoionisation code MOCASSIN www

  • molds

    Bullseye:(0.3.1-1+b4) Buster:(0.3.1-1+b3) Semi-empirical electronic structure and molecular dynamics www

  • mona

    Bullseye:(1.4-17-2) Buster:(1.4-17-1) theorem prover based on automata www

  • montage

    Bullseye:(6.0+dfsg-7+b2) Buster:(6.0+dfsg-6) Toolkit for assembling FITS images into mosaics www

  • montage-gridtools

    Bullseye:(6.0+dfsg-7+b2) Buster:(6.0+dfsg-6) Create files to run montage on the grid www

  • mopac7-bin

    Bullseye:(1.15-6+b1) Buster:(1.15-6) Semi-empirical Quantum Chemistry Library (binaries) www

  • mosdepth

    Bullseye:(0.3.1+ds-2) BAM/CRAM depth calculation biological sequencing www

  • mosdepth-examples

    Bullseye:(0.3.1+ds-2) Test data for mosdepth www

  • mothur

    Bullseye:(1.44.3-2) Buster:(1.41.21-1) sequence analysis suite for research on microbiota www

  • mozilla-biofox

    Bullseye & Buster:(1.6-1) extension of bioinformatics tools to Iceape and Iceweasel browsers www

  • mpb

    Bullseye:(1.11.1-3) Buster:(1.7.0-5) MIT Photonic-Bands www

  • mpb-mpi

    Bullseye:(1.11.1-3) Buster:(1.7.0-5) MIT Photonic-Bands, parallel (mpich) version www

  • mpb-scm

    Bullseye:(1.11.1-3) Buster:(1.7.0-5) MIT Photonic-Bands initialisation files www

  • mpgrafic

    Bullseye:(0.3.19-1) Buster:(0.3.18-1) MPI version of N-body initial conditions grafic package www

  • mpi-testsuite

    Bullseye & Buster:(3.2+dfsg-1) MPI testsuite results www

  • mpqc

    Bullseye:(2.3.1-21) Buster:(2.3.1-19) Massively Parallel Quantum Chemistry Program www

  • mpqc-support

    Bullseye:(2.3.1-21) Buster:(2.3.1-19) Massively Parallel Quantum Chemistry Program (support tools) www

  • mpsolve

    Bullseye:(3.2.1-2) Multiprecision polynomial solver (command line version) www

  • mptp

    Bullseye:(0.2.4-3) Buster:(0.2.4-1) single-locus species delimitation www

  • mrbayes

    Bullseye:(3.2.7a-4) Buster:(3.2.6+dfsg-2+b6) Bayesian Inference of Phylogeny www

  • mrbayes-mpi

    Bullseye:(3.2.7a-4) Buster:(3.2.6+dfsg-2+b6) Bayesian Inference of Phylogeny - mpi version www

  • mriconvert

    Bullseye:(1:2.1.0-4) Buster:(1:2.1.0-3) medical image file conversion utility www

  • mricron

    Bullseye:(1.0.20190902+dfsg-2) Buster:(0.20140804.1~dfsg.1-3) magnetic resonance image conversion, viewing and analysis www

  • mricron-data

    Bullseye:(1.0.20190902+dfsg-2) Buster:(0.20140804.1~dfsg.1-3) data files for MRIcron www

  • mrpt-apps

    Bullseye:(1:2.1.7-2) Buster:(1:1.5.6-1+b1) Mobile Robot Programming Toolkit - Console and GUI applications www

  • mrpt-common

    Bullseye:(1:2.1.7-2) Buster:(1:1.5.6-1) Mobile Robot Programming Toolkit - Example datasets and files www

  • mseed2sac

    Bullseye:(2.3+ds1-1) Buster:(2.2+ds1-4) Convert MiniSEED time series data to SAC www

  • msxpertsuite

    Bullseye:(5.8.9-1) Buster:(5.7.3-1) mass spectrometry software suite - metapackage www

  • msxpertsuite-massxpert

    Bullseye:(5.8.9-1) Buster:(5.7.3-1) mass spectrometry software suite - massXpert www

  • msxpertsuite-massxpert-data-doc

    Bullseye:(5.8.9-1) Buster:(5.7.3-1) mass spectrometry software suite - massXpert - data and doc www

  • msxpertsuite-minexpert

    Bullseye:(5.8.9-1) Buster:(5.7.3-1) mass spectrometry software suite - mineXpert www

  • msxpertsuite-minexpert-data-doc

    Bullseye:(5.8.9-1) Buster:(5.7.3-1) mass spectrometry software suite - mineXpert - data and doc www

  • multiqc

    Bullseye:(1.9+dfsg-3) output integration for RNA sequencing across tools and samples www

  • mummer

    Bullseye:(3.23+dfsg-7) Buster:(3.23+dfsg-4) Efficient sequence alignment of full genomes www

  • munipack

    Bullseye:(0.5.14-2) Buster:(0.5.11-2) Astronomical photometry software package www

  • munipack-cli

    Bullseye:(0.5.14-2) Buster:(0.5.11-2) Command line interface of Munipack www

  • munipack-core

    Bullseye:(0.5.14-2) Buster:(0.5.11-2) Core routines of Munipack www

  • munipack-gui

    Bullseye:(0.5.14-2) Buster:(0.5.11-2) Graphical user interface of Munipack www

  • murasaki

    Bullseye:(1.68.6-12) Buster:(1.68.6-8+b8) homology detection tool across multiple large genomes www

  • murasaki-common

    Bullseye:(1.68.6-12) Buster:(1.68.6-8) homology detection tool across multiple large genomes (common files) www

  • murasaki-mpi

    Bullseye:(1.68.6-12) Buster:(1.68.6-8+b8) homology detection tool across multiple large genomes (MPI-version) www

  • muscle

    Bullseye & Buster:(1:3.8.1551-2) Multiple alignment program of protein sequences www

  • music-bin

    Bullseye:(1.1.16-1.1+b2) Buster:(1.0.7-4+b2) Multi-Simulation Coordinator for MPI -- Utilities www

  • mustang

    Bullseye:(3.2.3-4) Buster:(3.2.3-3) multiple structural alignment of proteins www

  • mustang-testdata

    Bullseye:(3.2.3-4) Buster:(3.2.3-3) multiple structural alignment of proteins, test data www
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  • N

  • nanolyse

    Bullseye:(1.2.0-1+b7) remove lambda phage reads from a fastq file www

  • nanook

    Bullseye:(1.33+dfsg-2.1) Buster:(1.33+dfsg-1) pre- and post-alignment analysis of nanopore sequencing data www

  • nanook-examples

    Bullseye:(1.33+dfsg-2.1) pre- and post-alignment analysis of nanopore sequencing data (examples) www

  • nanopolish

    Bullseye:(0.13.2-3) consensus caller for nanopore sequencing data www

  • nanostat

    Bullseye:(1.4.0-3) statistics on long biological sequences www

  • nanosv

    Bullseye:(1.2.4+git20190409.c1ae30c-3) structural variant caller for nanopore data www

  • nast-ier

    Bullseye:(20101212+dfsg1-4) Buster:(20101212+dfsg1-2) NAST-based DNA alignment tool www

  • nautic

    Bullseye & Buster:(1.5-4) computation of observer position in astro-navigation www

  • ncbi-acc-download

    Bullseye:(0.2.7-1) download genome files from NCBI by accession www

  • ncbi-blast+

    Bullseye:(2.11.0+ds-1) Buster:(2.8.1-1+deb10u1) next generation suite of BLAST sequence search tools www

  • ncbi-blast+-legacy

    Bullseye:(2.11.0+ds-1) Buster:(2.8.1-1+deb10u1) NCBI Blast legacy call script www

  • ncbi-cn3d

    Bullseye:(3.0.20170106+dfsg1-9) 3-dimensional viewer for biological molecules www

  • ncbi-entrez-direct

    Bullseye:(14.6.20210224+dfsg-4) Buster:(10.9.20190219+ds-1) NCBI Entrez utilities on the command line www

  • ncbi-epcr

    Bullseye:(2.3.12-1-9) Buster:(2.3.12-1-7) Tool to test a DNA sequence for the presence of sequence tagged sites www

  • ncbi-rrna-data

    Bullseye:(6.1.20170106+dfsg1-9) Buster:(6.1.20170106+dfsg1-0+deb10u2) large rRNA BLAST databases distributed with the NCBI toolkit www

  • ncbi-seg

    Bullseye:(0.0.20000620-6) Buster:(0.0.20000620-5) tool to mask segments of low compositional complexity in amino acid sequences www

  • ncbi-tools-bin

    Bullseye:(6.1.20170106+dfsg1-9) Buster:(6.1.20170106+dfsg1-0+deb10u2) NCBI libraries for biology applications (text-based utilities) www

  • ncbi-tools-x11

    Bullseye:(6.1.20170106+dfsg1-9) Buster:(6.1.20170106+dfsg1-0+deb10u2) NCBI libraries for biology applications (X-based utilities) www

  • ncl-ncarg

    Bullseye:(6.6.2-7) Buster:(6.5.0-2) NCAR Command Language and NCAR graphics www

  • ncl-tools

    Bullseye:(2.1.21+git20190531.feceb81-3) Buster:(2.1.21+git20180827.c71b264-2) tools to deal with NEXUS files www

  • nco

    Bullseye:(4.9.7-1) Buster:(4.7.9-1) Command-line operators to analyze netCDF files www

  • ncoils

    Bullseye:(2002-8) Buster:(2002-7) coiled coil secondary structure prediction www

  • ncview

    Bullseye:(2.1.8+ds-4) Buster:(2.1.8+ds-3+b1) X11 visual browser for NetCDF format files www

  • neat

    Bullseye:(2.3.2-2) Buster:(2.2-1) Nebular Empirical Analysis Tool www

  • neobio

    Bullseye:(0.0.20030929-6) Buster:(0.0.20030929-4) computes alignments of amino acid and nucleotide sequences www

  • netcdf-bin

    Bullseye:(1:4.7.4-1) Buster:(1:4.6.2-1+b1) Programs for reading and writing NetCDF files www

  • neurodebian

    Bullseye:(0.41.0) Buster:(0.38.3) neuroscience-oriented distribution - repository configuration www

  • neurodebian-archive-keyring

    Bullseye:(0.41.0) Buster:(0.38.3) neuroscience-oriented distribution - GnuPG archive keys www

  • neurodebian-desktop

    Bullseye:(0.41.0) Buster:(0.38.3) neuroscience-oriented distribution - desktop integration www

  • neurodebian-dev

    Bullseye:(0.41.0) Buster:(0.38.3) neuroscience-oriented distribution - development tools www

  • neurodebian-freeze

    Bullseye:(0.41.0) Buster:(0.38.3) nd_freeze tool to freeze APT sources to use snapshots www

  • neurodebian-popularity-contest

    Bullseye:(0.41.0) Buster:(0.38.3) neuroscience-oriented distribution - popcon integration www

  • nexus-tools

    Bullseye:(4.4.3-5) NeXus scientific data file format - applications www

  • ngmlr

    Bullseye:(0.2.7+dfsg-4) CoNvex Gap-cost alignMents for Long Reads www

  • nifti-bin

    Bullseye:(3.0.1-8) Buster:(2.0.0-3) tools shipped with the NIfTI library www

  • nifti2dicom-data

    Bullseye:(0.4.11-3) Buster:(0.4.11-1) data files for nifti2dicom www

  • nim-kexpr-dev

    Bullseye:(0.0.2-2) kexpr math expressions for nim www

  • nim-lapper-dev

    Bullseye:(0.1.7-3) simple, fast interval searches for nim www

  • njplot

    Bullseye:(2.4-9) Buster:(2.4-8) phylogenetic tree drawing program www

  • norsnet

    Bullseye:(1.0.17-6) Buster:(1.0.17-4) tool to identify unstructured loops in proteins www

  • norsp

    Bullseye:(1.0.6-6) Buster:(1.0.6-4) predictor of non-regular secondary structure www

  • numdiff

    Bullseye & Buster:(5.9.0-1) Compare similar files with numeric fields www

  • nutsqlite

    Bullseye:(2.0.6-3) Buster:(2.0.6-1) Dietary nutrition analysis software www

  • nwchem

    Bullseye:(7.0.2-1) Buster:(6.8.1-5) High-performance computational chemistry software www

  • nwchem-data

    Bullseye:(7.0.2-1) Buster:(6.8.1-5) High-performance computational chemistry software (data files) www
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  • O

  • oar-web-status

    Bullseye:(2.5.9-1) Buster:(2.5.8-1+deb10u1) OAR batch scheduler visualization tool package www

  • objcryst-fox

    Bullseye:(1.9.6.0-2.2) Buster:(1.9.6.0-2.1+b1) Free Objects for Xtallography www

  • occt-draw

    Bullseye:(7.5.1+dfsg1-2+rpi1) Buster:(7.3.0+dfsg1-5+rpi1) Open CASCADE Technology command interpreter and graphical test system www

  • oce-draw

    Bullseye:(0.18.3-1) Buster:(0.18.2-3) OpenCASCADE Community Edition CAE platform shared library www

  • octave-bart

    Bullseye:(0.6.00-3) Buster:(0.4.04-2) Octave bindings for BART www

  • octave-biosig

    Bullseye:(2.1.2-4) Buster:(1.9.3-2) Octave bindings for BioSig library www

  • octave-brain2mesh

    Bullseye:(0.7.9-2) automated brain tetrahedral mesh generation toolbox for Octave www

  • octave-gdf

    Bullseye:(0.1.3-8) Buster:(0.1.2-2.1+b2) IO library for the GDF -- Octave interface www

  • octave-iso2mesh

    Bullseye:(1.9.6+ds-5) 3D surface and volumetric mesh generator for Octave www

  • octave-jnifti

    Bullseye:(0.6-2) fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter www

  • octave-jsonlab

    Bullseye:(2.0-1.1) native JSON/UBJSON/MassagePack encoder/decoder for Octave www

  • octave-psychtoolbox-3

    Bullseye:(3.0.17.9.dfsg1-2) Buster:(3.0.15.20190207.dfsg1-1) toolbox for vision research -- Octave bindings www

  • octave-zmat

    Bullseye:(0.9.8+ds-3) in-memory data compression for Octave www

  • octomap-tools

    Bullseye:(1.9.5+dfsg-1) Buster:(1.8.1+dfsg-1) Tools for 3D occupancy grid mapping www

  • octovis

    Bullseye:(1.9.5+dfsg-1) Visualization tool for OctoMap www

  • odil

    Bullseye:(0.12.1-1) Buster:(0.10.0-3) C++11 library for the DICOM standard (application) www

  • odin

    Bullseye:(2.0.4-3) Buster:(2.0.3-1) develop, simulate and run magnetic resonance sequences www

  • ogdi-bin

    Bullseye:(4.1.0+ds-5) Buster:(3.2.1+ds-4) Open Geographic Datastore Interface Library -- utilities www

  • ompl-plannerarena

    Bullseye:(1.5.2+ds1-1) Buster:(1.4.2+ds1-1) Open Motion Planning Library (OMPL) plannerarena www

  • openbabel

    Bullseye:(3.1.1+dfsg-6) Buster:(2.4.1+dfsg-3) Chemical toolbox utilities (cli) www

  • openbabel-gui

    Bullseye:(3.1.1+dfsg-6) Buster:(2.4.1+dfsg-3) Chemical toolbox utilities (graphical user interface) www

  • opendrop

    Bullseye:(3.1.7dev0-2) fully-featured pendant drop tensiometry software www

  • openfoam

    Bullseye:(1912.200626-1) Buster:(1812+dfsg1-2) Open source toolbox for Computational Fluid Dynamics (CFD) - binaries www

  • openfoam-examples

    Bullseye:(1912.200626-1) Buster:(1812+dfsg1-2) Open source toolbox for Computational Fluid Dynamics (CFD) - examples www

  • openmolar

    Bullseye & Buster:(1.0.15-gd81f9e5-1) dental practice management software www

  • openmolcas-data

    Bullseye:(20.10-2) Quantum chemistry software package (data files) www

  • openmotor

    Bullseye:(0.4.0-4) internal ballistics simulator for rocket motor experimenters www

  • openms

    Bullseye:(2.6.0+cleaned1-3) Buster:(2.4.0-real-1) package for LC/MS data management and analysis www

  • openms-common

    Bullseye:(2.6.0+cleaned1-3) Buster:(2.4.0-real-1) package for LC/MS data management and analysis - shared data www

  • openmx

    Bullseye & Buster:(3.8.5+dfsg1-1) package for nano-scale material simulations www

  • openmx-data

    Bullseye & Buster:(3.8.5+dfsg1-1) package for nano-scale material simulations (data) www

  • openrocket

    Bullseye & Buster:(15.03.5) Model Rocket Simulator www

  • openuniverse

    Bullseye:(1.0beta3.1+dfsg-6.1) Buster:(1.0beta3.1+dfsg-6) 3D Universe Simulator www

  • openuniverse-common

    Bullseye:(1.0beta3.1+dfsg-6.1) Buster:(1.0beta3.1+dfsg-6) 3D Universe Simulator data files www

  • opj2dat

    Bullseye & Buster:(20080225-2.2) OriginLab Origin project files to data files converter www

  • optgeo

    Bullseye:(2.25-2) Buster:(2.25-1) simulator for geometrical optics www

  • opticalraytracer

    Bullseye:(9.6-1) Buster:(3.2-1.1) Virtual lens/mirror design workshop www

  • optimir

    Bullseye:(1.0-3) Integrating genetic variations in miRNA alignment www

  • origami

    Bullseye & Buster:(1.2.7+really0.7.4-1.1) command-line management tool for Folding @ Home clients www

  • orthanc

    Bullseye:(1.9.2+really1.9.1+dfsg-1) Buster:(1.5.6+dfsg-1) Lightweight, RESTful DICOM server for medical imaging www

  • orthanc-dicomweb

    Bullseye:(1.5+dfsg-3) Buster:(0.6+dfsg-1) Plugin to extend Orthanc with support of WADO and DICOMweb www

  • orthanc-gdcm

    Bullseye:(1.2-1) DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k) www

  • orthanc-imagej

    Bullseye:(1.2+dfsg-3) Buster:(1.2+dfsg-1) ImageJ plugin to import images from Orthanc www

  • orthanc-mysql

    Bullseye:(3.0-1) Buster:(2.0-2) Plugins to use MySQL or MariaDB as a database back-end to Orthanc www

  • orthanc-postgresql

    Bullseye:(3.3-1) Buster:(3.2-1) Plugins to use PostgreSQL as a database back-end to Orthanc www

  • orthanc-python

    Bullseye:(3.1+ds-1) Develop plugins for Orthanc using the Python programming language www

  • orthanc-webviewer

    Bullseye:(2.7-4) Buster:(2.5-1) Web viewer of medical images for Orthanc www

  • orthanc-wsi

    Bullseye:(1.0-3) Buster:(0.6-2) Whole-slide imaging support for Orthanc (digital pathology) www

  • oscar

    Bullseye:(1.2.0-1) Open Source CPAP Analysis Reporter (OSCAR) www

  • ossim-core

    Bullseye:(2.9.1-3+b1) Buster:(2.6.2-1) OSSIM core utilities www

  • otf-trace

    Bullseye:(1.12.5+dfsg-8) Buster:(1.12.5+dfsg-4) Open Trace Format support library - development files www
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  • P

  • packmol

    Bullseye:(20.010-1) Initial configurations for Molecular Dynamics Simulations www

  • paje.app

    Bullseye:(1.98-1+b9) Buster:(1.98-1+b7) generic visualization tool (Gantt chart and more)

  • pal2nal

    Bullseye:(14.1-3) Buster:(14.1-2) converts proteins to genomic DNA alignment www

  • paml

    Bullseye:(4.9j+dfsg-3) Buster:(4.9h+dfsg-1) Phylogenetic Analysis by Maximum Likelihood (PAML) www

  • paraclu

    Bullseye:(9-3) Buster:(9-2) Parametric clustering of genomic and transcriptomic features www

  • parafly

    Bullseye:(0.1.0-2) parallel command processing using OpenMP www

  • parsinsert

    Bullseye:(1.04-10) Buster:(1.04-4) Parsimonious Insertion of unclassified sequences into phylogenetic trees www

  • parsinsert-testdata

    Bullseye:(1.04-10) Buster:(1.04-4) Test data for parsinsert www

  • parsnp

    Bullseye:(1.5.4+dfsg-1) Buster:(1.2+dfsg-5+b1) rapid core genome multi-alignment www

  • patman

    Bullseye:(1.2.2+dfsg-7) Buster:(1.2.2+dfsg-5) rapid alignment of short sequences to large databases www

  • pbbamtools

    Bullseye:(1.0.6+dfsg-2+rpi1) Buster:(0.19.0+dfsg-4+rpi1) processing Pacific Biosciences binary alignment/map files www

  • pbhoney

    Bullseye:(15.8.24+dfsg-7) Buster:(15.8.24+dfsg-3) genomic structural variation discovery www

  • pbjelly

    Bullseye:(15.8.24+dfsg-7) Buster:(15.8.24+dfsg-3) genome assembly upgrading tool www

  • pbsim

    Bullseye:(1.0.3+git20180330.e014b1d+dfsg-2) Buster:(1.0.3+git20180330.e014b1d+dfsg-1) simulator for PacBio sequencing reads www

  • pcl-tools

    Bullseye:(1.11.1+dfsg-1) Buster:(1.9.1+dfsg1-10) Point Cloud Library - point cloud processing tools www

  • pdb2pqr

    Bullseye:(2.1.1+dfsg-7+deb11u1) Buster:(2.1.1+dfsg-5) Preparation of protein structures for electrostatics calculations www

  • perlprimer

    Bullseye:(1.2.4-2) Buster:(1.2.4-1) Graphical design of primers for PCR www

  • perm

    Bullseye:(0.4.0-7) Buster:(0.4.0-4) efficient mapping of short reads with periodic spaced seeds www

  • phast

    Bullseye:(1.5+dfsg-2) Buster:(1.4+dfsg-1) phylogenetic analysis with space/time models www

  • phipack

    Bullseye:(0.0.20160614-5) Buster:(0.0.20160614-3) PHI test and other tests of recombination www

  • phy-spread

    Bullseye & Buster:(1.0.3-1) analyze and visualize phylogeographic reconstructions www

  • phybin

    Bullseye:(0.3-5) Buster:(0.3-3) binning/clustering newick trees by topology www

  • phylip

    Bullseye:(1:3.697+dfsg-2) Buster:(1:3.697+dfsg-1) package of programs for inferring phylogenies www

  • phylonium

    Bullseye:(1.3-1) Fast and Accurate Estimation of Evolutionary Distances www

  • phyml

    Bullseye:(3:3.3.20200621-1) Buster:(3:3.3.20180621-2) Phylogenetic estimation using Maximum Likelihood www

  • physamp

    Bullseye:(1.1.0-2) Buster:(1.1.0-1) sample sequence alignment corresponding to phylogeny www

  • phyutility

    Bullseye:(2.7.3+dfsg-3) Buster:(2.7.3+dfsg-2) simple analyses or modifications on both phylogenetic trees and data matrices www

  • phyx

    Bullseye:(1.01+ds-2+b1) Buster:(0.999+ds-1) UNIX-style phylogenetic analyses on trees and sequences www

  • picard-tools

    Bullseye:(2.24.1+dfsg-1) Command line tools to manipulate SAM and BAM files www

  • picopore

    Bullseye:(1.2.0-2) lossless compression of Nanopore files www

  • picosat

    Bullseye:(965-2) Buster:(960-1) SAT solver with proof and core support www

  • pigx-rnaseq

    Bullseye:(0.0.10+ds-2) pipeline for checkpointed and distributed RNA-seq analyses www

  • piler

    Bullseye:(0~20140707-3) Buster:(0~20140707-2) genomic repeat analysis www

  • pilercr

    Bullseye:(1.06+dfsg-4) software for finding CRISPR repeats www

  • pilon

    Bullseye:(1.23+dfsg-2) Buster:(1.23+dfsg-1) automated genome assembly improvement and variant detection tool www

  • pinfish-examples

    Bullseye:(0.1.0+ds-2) Examples and test data for pinfish www

  • pique

    Bullseye:(1.0-2) software pipeline for performing genome wide association studies www

  • pirs

    Bullseye:(2.0.2+dfsg-9) Buster:(2.0.2+dfsg-8) Profile based Illumina pair-end Reads Simulator www

  • pirs-examples

    Bullseye:(2.0.2+dfsg-9) Buster:(2.0.2+dfsg-8) profile basd Illumina pair-end Reads Simulator (example data) www

  • pirs-profiles

    Bullseye:(2.0.2+dfsg-9) Buster:(2.0.2+dfsg-8) profile basd Illumina pair-end Reads Simulator (profile data) www

  • pizzly

    Bullseye:(0.37.3+ds-5) Identifies gene fusions in RNA sequencing data www

  • pkg-r-autopkgtest

    Bullseye:(20210303) Buster:(20190121) Script for the automatic testing of R packages

  • pktools

    Bullseye:(2.6.7.6+ds-3+b1) Buster:(2.6.7.6+ds-1+b1) GDAL add-on tools to perform useful raster processing www

  • placnet

    Bullseye & Buster:(1.03-3) Plasmid Constellation Network project www

  • planets

    Bullseye:(0.1.13-20) Buster:(0.1.13-19) Gravitation simulation of planetary bodies www

  • plasmidseeker

    Bullseye:(1.3+dfsg-1) Buster:(1.0+dfsg-1) identification of known plasmids from whole-genome sequencing reads www

  • plast

    Bullseye:(2.3.2+dfsg-7) Parallel Local Sequence Alignment Search Tool www

  • plast-example

    Bullseye:(2.3.2+dfsg-7) Buster:(2.3.2+dfsg-1) Parallel Local Sequence Alignment Search Tool (example data) www

  • plink

    Bullseye:(1.07+dfsg-3) Buster:(1.07+dfsg-2) whole-genome association analysis toolset www

  • plink1.9

    Bullseye:(1.90~b6.21-201019-1) Buster:(1.90~b6.6-181012-1) whole-genome association analysis toolset www

  • pluto-jpl-eph

    Bullseye & Buster:(0.0~git20180228-1.1) command line handling of JPL ephemeres data www

  • pluto-lunar

    Bullseye & Buster:(0.0~git20180825.e34c1d1-1) routines for predictions of positions in solar system www

  • poa

    Bullseye:(2.0+20060928-8) Buster:(2.0+20060928-7) Partial Order Alignment for multiple sequence alignment www

  • populations

    Bullseye:(1.2.33+svn0120106+dfsg-6) Buster:(1.2.33+svn0120106+dfsg-2) population genetic software www

  • porechop

    Bullseye:(0.2.4+dfsg-2) Buster:(0.2.4+dfsg-1) adapter trimmer for Oxford Nanopore reads www

  • poretools

    Bullseye:(0.6.0+dfsg-5) Buster:(0.6.0+dfsg-3) toolkit for nanopore nucleotide sequencing data www

  • poretools-data

    Bullseye:(0.6.0+dfsg-5) Buster:(0.6.0+dfsg-3) toolkit for nanopore nucleotide sequencing data -- sample datasets www

  • pp-popularity-contest

    Bullseye:(1.0.6-4+b6) Buster:(1.0.6-4) PredictProtein popularity contest www

  • praat

    Bullseye:(6.1.38-1) Buster:(6.0.32-1) program for speech analysis and synthesis www

  • prank

    Bullseye:(0.0.170427+dfsg-3) Buster:(0.0.170427+dfsg-2) Probabilistic Alignment Kit for DNA, codon and amino-acid sequences www

  • predictnls

    Bullseye:(1.0.20-6) Buster:(1.0.20-5) prediction and analysis of protein nuclear localization signals www

  • prime-phylo

    Bullseye:(1.0.11-9) Buster:(1.0.11-7) bayesian estimation of gene trees taking the species tree into account www

  • primer3

    Bullseye:(2.4.0-4) Buster:(2.4.0-2) tool to design flanking oligo nucleotides for DNA amplification www

  • primer3-examples

    Bullseye:(2.4.0-4) Buster:(2.4.0-2) tool to design flanking oligo nucleotides for DNA amplification (examples) www

  • prinseq-lite

    Bullseye:(0.20.4-6) PReprocessing and INformation of SEQuence data (lite version) www

  • prinseq-lite-examples

    Bullseye:(0.20.4-6) PReprocessing and INformation of SEQuence data (example data) www

  • proalign

    Bullseye:(0.603-5) Buster:(0.603-4) Probabilistic multiple alignment program www

  • probabel

    Bullseye:(0.5.0+dfsg-4) Buster:(0.5.0+dfsg-3) Toolset for Genome-Wide Association Analysis www

  • probabel-examples

    Bullseye:(0.5.0+dfsg-4) Buster:(0.5.0+dfsg-3) Example files for ProbABEL www

  • probalign

    Bullseye:(1.4-9) Buster:(1.4-8) multiple sequence alignment using partition function posterior probabilities www

  • probcons

    Bullseye:(1.12-13) Buster:(1.12-12) PROBabilistic CONSistency-based multiple sequence alignment www

  • probcons-extra

    Bullseye:(1.12-13) Buster:(1.12-12) Extra programs from the probcons package www

  • proda

    Bullseye:(1.0-13) Buster:(1.0-12) multiple alignment of protein sequences www

  • prodigal

    Bullseye & Buster:(1:2.6.3-4) Microbial (bacterial and archaeal) gene finding program www

  • profbval

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) predictor of flexible/rigid protein residues from sequence www

  • profisis

    Bullseye:(1.0.11-6) Buster:(1.0.11-5) prediction of protein-protein interaction sites from sequence www

  • profnet-bval

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profbval www

  • profnet-chop

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profchop www

  • profnet-con

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profcon www

  • profnet-isis

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profisis www

  • profnet-md

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for metadisorder www

  • profnet-norsnet

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for norsnet www

  • profnet-prof

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profacc www

  • profnet-snapfun

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for snapfun www

  • profphd

    Bullseye & Buster:(1.0.42-3) secondary structure and solvent accessibility predictor www

  • profphd-net

    Bullseye:(1.0.22-7) Buster:(1.0.22-6) neural network architecture for profphd www

  • profphd-utils

    Bullseye:(1.0.10-6) Buster:(1.0.10-5) profphd helper utilities convert_seq and filter_hssp www

  • proftmb

    Bullseye:(1.1.12-9) Buster:(1.1.12-8) per-residue prediction of bacterial transmembrane beta barrels www

  • progressivemauve

    Bullseye:(1.2.0+4713+dfsg-5) Buster:(1.2.0+4713+dfsg-4) multiple genome alignment algorithms www

  • proj-bin

    Bullseye:(7.2.1-1) Buster:(5.2.0-1) Cartographic projection library (tools) www

  • proj-rdnap

    Bullseye:(2008+2018-5) Buster:(2008-8) RDNAP grid correction files for PROJ www

  • prooftree

    Bullseye:(0.13-2) Buster:(0.13-1+b28) proof-tree visualization for Proof General www

  • proteinortho

    Bullseye:(6.0.28+dfsg-1) Buster:(5.16.b+dfsg-1) Detection of (Co-)orthologs in large-scale protein analysis www

  • prottest

    Bullseye:(3.4.2+dfsg-5) Buster:(3.4.2+dfsg-3) selection of best-fit models of protein evolution www

  • pscan-chip

    Bullseye:(1.1-3) Buster:(1.1-2) ChIP-based identifcation of TF binding sites www

  • pscan-chip-data

    Bullseye:(1.1-3) Buster:(1.1-2) auxiliary data for PScan-ChIP www

  • pscan-tfbs

    Bullseye:(1.2.2-4) Buster:(1.2.2-3) search for transcription factor binding sites www

  • psfex

    Bullseye:(3.17.1+dfsg-6) Buster:(3.17.1+dfsg-5) Point Spread Function model extractor www

  • psi3

    Bullseye:(3.4.0-6+b1) Buster:(3.4.0-6) Quantum Chemical Program Suite www

  • psi4

    Bullseye:(1:1.3.2+dfsg-2) Buster:(1:1.2.1-2) Quantum Chemical Program Suite www

  • psi4-data

    Bullseye:(1:1.3.2+dfsg-2) Buster:(1:1.2.1-2) Quantum Chemical Program Suite (data files) www

  • psychopy

    Bullseye:(2020.2.10+dfsg-2) environment for creating psychology stimuli in Python www

  • psychtoolbox-3-common

    Bullseye:(3.0.17.9.dfsg1-2) Buster:(3.0.15.20190207.dfsg1-1) toolbox for vision research -- arch/interpreter independent part www

  • psychtoolbox-3-lib

    Bullseye:(3.0.17.9.dfsg1-2) Buster:(3.0.15.20190207.dfsg1-1) toolbox for vision research -- arch-specific parts www

  • purify

    Bullseye:(2.0.0-5+b2) Buster:(2.0.0-4+b2) Collection of routines for radio interferometric imaging www

  • pycoqc

    Bullseye:(2.5.2+dfsg-1) computes metrics and generates Interactive QC plots www

  • pyfai

    Bullseye:(0.20.0+dfsg1-3) Buster:(0.17.0+dfsg1-3) Fast Azimuthal Integration scripts www

  • pyfr

    Bullseye & Buster:(1.5.0-3) flux reconstruction in Python www

  • pymca

    Bullseye:(5.6.3+dfsg-1) Buster:(5.4.3+dfsg-1) Applications and toolkit for X-ray fluorescence analysis -- scripts www

  • pymca-data

    Bullseye:(5.6.3+dfsg-1) Buster:(5.4.3+dfsg-1) Architecture independent data files for PyMca www

  • pymoctool

    Bullseye:(0.5.0-5) Buster:(0.5.0-4) Python Multi-Order Coverage maps tool for Virtual Observatory www

  • pymol

    Bullseye:(2.4.0+dfsg-2) Buster:(2.2.0+dfsg-4) Molecular Graphics System www

  • pymol-data

    Bullseye:(2.4.0+dfsg-2) Buster:(2.2.0+dfsg-4) data files for PyMOL www

  • pysatellites

    Bullseye:(2.6-1) Buster:(2.5-1) simulates the launching of satellites

  • pyscanfcs

    Bullseye:(0.3.6+ds-2+b1) Buster:(0.3.2+ds-2) scientific tool for perpendicular line scanning FCS www

  • pythia8-data

    Bullseye & Buster:(8.1.86-1.2) PYTHIA8 data files www

  • python-drizzle-testdata

    Bullseye:(1.13.1-2) Buster:(1.12-2) Dithered image combination for Python (Test data) www

  • python-escript-doc

    Bullseye:(5.6-3) Documentation for Escript/Finley www

  • python-pairix-examples

    Bullseye:(0.3.7-3) 1D/2D indexing and querying with a pair of genomic coordinates (examples) www

  • python3-airr

    Bullseye:(1.3.1-1) Buster:(1.2.1-2) Data Representation Standard library for antibody and TCR sequences www

  • python3-alignlib

    Bullseye:(0.1.1+dfsg-1.1+b1) edit and Hamming distances for biological sequences www

  • python3-amp

    Bullseye:(0.6.1-1+b2) Buster:(0.6.1-1) Atomistic Machine-learning Package (python 3) www

  • python3-cif2cell

    Bullseye:(2.0.0a1+dfsg-3) prepare CIF files for electronic structure calculations www

  • python3-deeptools

    Bullseye:(3.5.0-1) platform for exploring biological deep-sequencing data www

  • python3-dnapilib

    Bullseye:(1.1-3) adapter prediction for small RNA sequencing - library www

  • python3-geneimpacts

    Bullseye:(0.3.7-3) wraps command line tools to assess variants in gene sequences www

  • python3-gffutils

    Bullseye:(0.10.1-2) Buster:(0.9-1) Work with GFF and GTF files in a flexible database framework www

  • python3-jupyter-sphinx

    Bullseye:(0.2.3-1) Jupyter Sphinx Extension - Python3 www

  • python3-keras

    Bullseye:(2.3.1+dfsg-3) Buster:(2.2.4-1) deep learning framework running on Theano or TensorFlow www

  • python3-mmtf

    Bullseye:(1.1.2-3) binary encoding of biological structures (Python 3) www

  • python3-nanostat

    Bullseye:(1.4.0-3) statistics on long biological sequences www

  • python3-noise

    Bullseye:(1.2.3-3+b1) Perlin noise for image generation www

  • python3-onnx

    Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (Python) www

  • python3-peptidebuilder

    Bullseye:(1.1.0-2) generate atomic oligopeptide 3D structure from sequence www

  • python3-pybel

    Bullseye:(0.14.10-1) Buster:(0.12.1-1) Biological Expression Language www

  • python3-pybigwig

    Bullseye:(0.3.17-1+b2) Buster:(0.3.12-1) Python 3 module for quick access to bigBed and bigWig files www

  • python3-pynlpl

    Bullseye:(1.2.9-1) Buster:(1.1.2-1) PyNLPl is a library for Natural Language Processing (Python 3 version) www

  • python3-qiskit-ibmq-provider

    Bullseye:(0.4.6-3) Quantum Information Science Kit (Qiskit): IBM Q Provider www

  • python3-qiskit-terra

    Bullseye:(0.12.0-2.1+b1) Quantum Information Science Kit (Qiskit) for Python 3 www

  • python3-seqcluster

    Bullseye:(1.2.7+ds-1) analysis of small RNA in NGS data www

  • python3-skorch

    Bullseye:(0.9.0-3) scikit-learn compatible neural network library that wraps PyTorch www

  • python3-torch-ignite

    Bullseye:(0.4.3-1) High-level library to help with training and evaluating in PyTorch www

  • pyzo

    Bullseye:(4.11.2-1) Buster:(4.4.3-1.2) interactive editor for scientific Python www
  • Back to top

  • Q

  • q2-alignment

    Bullseye:(2020.11.1-2) QIIME 2 plugin for generating and manipulating alignments www

  • q2-demux

    Bullseye:(2020.11.1-1) QIIME 2 plugin for demultiplexing of sequence reads www

  • q2-feature-classifier

    Bullseye:(2020.11.1-2) QIIME 2 plugin supporting taxonomic classification www

  • q2-feature-table

    Bullseye:(2020.11.1+dfsg-1) QIIME 2 plugin supporting operations on feature tables www

  • q2-quality-control

    Bullseye:(2020.11.1-3) QIIME 2 plugin for quality assurance of feature and sequence data www

  • q2-quality-filter

    Bullseye:(2020.11.1-2) QIIME2 plugin for PHRED-based filtering and trimming www

  • q2-sample-classifier

    Bullseye:(2020.11.1-3) QIIME 2 plugin for machine learning prediction of sample data www

  • q2-taxa

    Bullseye:(2020.11.1+dfsg-2) QIIME 2 plugin for working with feature taxonomy annotations www

  • q2-types

    Bullseye:(2020.11.1-1) QIIME 2 plugin defining types for microbiome analysis www

  • q2cli

    Bullseye:(2020.11.1-1) Click-based command line interface for QIIME 2 www

  • q2templates

    Bullseye:(2020.11.1+dfsg-1) Design template package for QIIME 2 Plugins www

  • qcat

    Bullseye:(1.1.0-2) demultiplexing Oxford Nanopore reads from FASTQ files www

  • qcat-examples

    Bullseye:(1.1.0-2) demultiplexing Oxford Nanopore reads from FASTQ files (examples) www

  • qcumber

    Bullseye:(2.3.0-2) Buster:(1.0.14+dfsg-1) quality control of genomic sequences www

  • qfits-tools

    Bullseye:(6.2.0-8+b1) Buster:(6.2.0-8) FITS manipulation tools www

  • qfitsview

    Bullseye:(4.0+dfsg-3+b2) Buster:(3.3+p1+dfsg-2+b1) FITS file viewer based on DPUSER www

  • qgis

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) Geographic Information System (GIS) www

  • qgis-api-doc

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2) QGIS API documentation www

  • qgis-common

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2) QGIS - architecture-independent data www

  • qgis-plugin-grass

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) GRASS plugin for QGIS www

  • qgis-plugin-grass-common

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2) GRASS plugin for QGIS - architecture-independent data www

  • qgis-provider-grass

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) GRASS provider for QGIS www

  • qgis-providers

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) collection of data providers to QGIS www

  • qgis-providers-common

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2) collection of data providers to QGIS - architecture-independent files www

  • qgis-server

    Bullseye:(3.10.14+dfsg-1) Buster:(2.18.28+dfsg-2+b1) QGIS server providing various OGC services www

  • qgis3-survex-import

    Bullseye:(1.2-1) QGIS3 plugin to read survex 3d files, for cave surveying www

  • qiime

    Bullseye:(2020.11.1-1) Buster:(1.8.0+dfsg-4+b15) Quantitative Insights Into Microbial Ecology www

  • qmc

    Bullseye & Buster:(0.94-3.1) Quine McClusky Simplification Tool

  • qrisk2

    Bullseye:(0.1.20150729-5) Buster:(0.1.20150729-4) cardiovascular disease risk calculator www

  • qthid-fcd-controller

    Bullseye:(4.1-5) Buster:(4.1-3) Funcube Dongle controller www

  • qtltools

    Bullseye:(1.3.1+dfsg-2) Buster:(1.1+dfsg-3) Tool set for molecular QTL discovery and analysis www

  • quantum-espresso

    Bullseye:(6.7-2) Buster:(6.3-4) Electronic-Structure and Ab-Initio Molecular Dynamics Suite www

  • quantum-espresso-data

    Bullseye:(6.7-2) Buster:(6.3-4) Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation) www

  • quicktree

    Bullseye:(2.5-5) Neighbor-Joining algorithm for phylogenies www

  • quitcount

    Bullseye:(3.1.4-3) Buster:(3.1.4-1) Small tool which may help yourself quit smoking www

  • qutemol

    Bullseye:(0.4.1~cvs20081111-13) Buster:(0.4.1~cvs20081111-12) interactive visualization of macromolecules www
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  • R

  • r-cran-shazam

    Bullseye:(1.0.2-1) Buster:(0.1.11-1) Immunoglobulin Somatic Hypermutation Analysis www

  • r-cran-tigger

    Bullseye:(1.0.0-1) Buster:(0.3.1-1) Infers new Immunoglobulin alleles from Rep-Seq Data www

  • raccoon

    Bullseye:(1.0b-5) Buster:(1.0b-2) preparation of in silico drug screening projects www

  • racon

    Bullseye:(1.4.20-1) consensus module for raw de novo DNA assembly of long uncorrected reads www

  • radiant

    Bullseye:(2.7.1+dfsg-4) Buster:(2.7+dfsg-2) explore hierarchical metagenomic data with zoomable pie charts www

  • ragout

    Bullseye:(2.3-2) Reference-Assisted Genome Ordering UTility www

  • ragout-examples

    Bullseye:(2.3-2) Reference-Assisted Genome Ordering UTility (example data) www

  • rambo-k

    Bullseye:(1.21+dfsg-3) Buster:(1.21+dfsg-2) Read Assignment Method Based On K-mers www

  • rampler

    Bullseye:(2.0.0-1) Buster:(1.1.0-1) module for sampling genomic sequences www

  • rapmap-dev

    Bullseye:(0.15.0+dfsg-1) Buster:(0.12.0+dfsg-3) rapmap - rapid sensitive and accurate DNA read mapping (some headers) www

  • rapmap-example-data

    Bullseye:(0.15.0+dfsg-1) Buster:(0.12.0+dfsg-3) example data for rapmap - rapid sensitive and accurate DNA read mapping www

  • rasmol

    Bullseye:(2.7.6.0-2) Buster:(2.7.6.0-1) visualization of biological macromolecules www

  • raster3d

    Bullseye:(3.0-7-2) Buster:(3.0-3-5+b7) tools for generating images of proteins or other molecules www

  • rate4site

    Bullseye:(3.0.0-7) Buster:(3.0.0-6) detector of conserved amino-acid sites www

  • rawtran

    Bullseye:(1.1-1+b2) Buster:(1.1-1) RAW photo to FITS converter www

  • raxml

    Bullseye:(8.2.12+dfsg-6) Randomized Axelerated Maximum Likelihood of phylogenetic trees www

  • ray

    Bullseye:(2.3.1-7) Buster:(2.3.1-6) de novo genome assemblies of next-gen sequencing data www

  • ray-extra

    Bullseye:(2.3.1-7) Buster:(2.3.1-6) Scripts and XSL sheets for post-processing for ray www

  • rdkit-data

    Bullseye:(202009.4-1) Buster:(201809.1+dfsg-6) Collection of cheminformatics and machine-learning software (data files) www

  • rdp-classifier

    Bullseye:(2.10.2-5) Buster:(2.10.2-4) extensible sequence classifier for fungal lsu, bacterial and archaeal 16s www

  • readseq

    Bullseye:(1-14) Buster:(1-13) Conversion between sequence formats www

  • readucks

    Bullseye:(0.0.3-2) Nanopore read de-multiplexer (read demux -> readux -> readucks, innit) www

  • reapr

    Bullseye:(1.0.18+dfsg-5) Buster:(1.0.18+dfsg-4) universal tool for genome assembly evaluation www

  • recan

    Bullseye:(0.1.2-2) genetic distance plotting for recombination events analysis www

  • refmac-dictionary

    Bullseye:(5.41-2) Buster:(5.41-1) dictionary for macromolecular refinement and model building www

  • repeatmasker-recon

    Bullseye:(1.08-6) Buster:(1.08-4) finds repeat families from biological sequences www

  • reprof

    Bullseye:(1.0.1-7) Buster:(1.0.1-6) protein secondary structure and accessibility predictor www

  • resfinder

    Bullseye:(3.2-3) identify acquired antimicrobial resistance genes www

  • resfinder-db

    Bullseye:(0.0+git20200408.0322c0d-1) ResFinder database is a curated database of acquired resistance genes www

  • resfinder-example

    Bullseye:(3.2-3) identify acquired antimicrobial resistance genes (example data) www

  • rnahybrid

    Bullseye:(2.1.2-6) Buster:(2.1.2-5) Fast and effective prediction of microRNA/target duplexes www

  • roary

    Bullseye:(3.13.0+dfsg-1) Buster:(3.12.0+dfsg-2) high speed stand alone pan genome pipeline www

  • rocketcea

    Bullseye:(1.1.18+dfsg-2) NASA Chemical Equilibrium, wrapped in Python www

  • roguenarok

    Bullseye:(1.0-4) Buster:(1.0-3) versatile and scalable algorithm for rogue taxon identification www

  • routine-update

    Bullseye:(0.0.6) routine updater for a Debian source package www

  • rtax

    Bullseye:(0.984-7) Buster:(0.984-6) Classification of sequence reads of 16S ribosomal RNA gene www

  • ruby-getspg

    Bullseye:(1.16.1-1) C library for crystal symmetry determination - Ruby bindings www

  • ruby-rgfa

    Bullseye:(1.3.1+dfsg-2) Buster:(1.3.1+dfsg-1) parse, edit and write GFA format graphs in Ruby www

  • runcircos-gui

    Bullseye:(0.0+git20200528.82dda8c-1) Buster:(0.0+git20180828.97703b9-1+b5) GUI tool to run circos www
  • Back to top

  • S

  • sac2mseed

    Bullseye & Buster:(1.12+ds1-3) Convert SAC waveform data to MiniSEED www

  • saga

    Bullseye:(7.3.0+dfsg-5) Buster:(2.3.1+dfsg-4+b1) System for Automated Geoscientific Analyses www

  • saga-common

    Bullseye:(7.3.0+dfsg-5) Buster:(2.3.1+dfsg-4) SAGA GIS architecture independent files www

  • saint

    Bullseye:(2.5.0+dfsg-4) Buster:(2.5.0+dfsg-3) Significance Analysis of INTeractome www

  • salmid

    Bullseye:(0.1.23-2) Buster:(0.1.23-1) rapid Kmer based Salmonella identifier from sequence data www

  • samblaster

    Bullseye:(0.1.26-1) Buster:(0.1.24-2) marks duplicates, extracts discordant/split reads www

  • samclip

    Bullseye:(0.4.0-2) filter SAM file for soft and hard clipped alignments www

  • samtools

    Bullseye:(1.11-1) Buster:(1.9-4) processing sequence alignments in SAM, BAM and CRAM formats www

  • samtools-test

    Bullseye:(1.11-1) Buster:(1.9-4) test files for the samtools package www

  • saods9

    Bullseye:(8.2+repack-2) Buster:(8.0.1+repack-2) Image display tool for astronomy www

  • sasview

    Bullseye:(5.0.3-3) Buster:(4.2.1-1) Small Angle Scattering Analysis suite www

  • sat4j

    Bullseye & Buster:(2.3.5-0.3) Efficient library of SAT solvers in Java www

  • savi

    Bullseye:(1.5.1-4) Buster:(1.5.1-3) satellite constellation visualisation www

  • sbmltoolbox

    Bullseye:(4.1.0-5) Buster:(4.1.0-4) libsbml toolbox for octave and matlab www

  • scamp

    Bullseye:(2.0.4+dfsg-1+b4) Buster:(2.0.4+dfsg-1+b1) Compute astrometric and photometric solutions www

  • science-config

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Project config package www

  • science-dataacquisition-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science data acquisition development packages www

  • science-electronics

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Electronics transitional package www

  • science-engineering-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Engineering-dev packages www

  • science-highenergy-physics

    Bullseye:(1.14.2) Buster:(1.10) Debian Science High Energy Physics packages www

  • science-highenergy-physics-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science High Energy Physics development packages www

  • science-machine-learning

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Machine Learning packages www

  • science-mathematics-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Mathematics-dev packages www

  • science-meteorology-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Meteorology-dev packages www

  • science-nanoscale-physics

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Nanoscale Physics packages www

  • science-nanoscale-physics-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Nanoscale Physics development packages www

  • science-neuroscience-cognitive

    Bullseye:(1.14.2) Buster:(1.10) Debian Science packages for Cognitive Neuroscience www

  • science-neuroscience-modeling

    Bullseye:(1.14.2) Buster:(1.10) Debian Science packages for modeling of neural systems www

  • science-physics-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science Physics-dev packages www

  • science-robotics-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Robotics development packages www

  • science-tasks

    Bullseye:(1.14.2) Buster:(1.10) Debian Science tasks for tasksel www

  • science-viewing-dev

    Bullseye:(1.14.2) Buster:(1.10) Debian Science development of visualisation applications www

  • scoary

    Bullseye:(1.6.16-2) Buster:(1.6.16-1) pangenome-wide association studies www

  • scram

    Bullseye:(0.16.2-3) Buster:(0.16.2-1) Probabilistic Risk Analysis Tool www

  • scram-gui

    Bullseye:(0.16.2-3) Buster:(0.16.2-1) SCRAM GUI front-end www

  • scrappie

    Bullseye:(1.4.2-7) basecaller for Nanopore sequencer www

  • scrm

    Bullseye:(1.7.4-1) Buster:(1.7.3-1) simulator of evolution of genetic sequences www

  • sctk

    Bullseye:(2.4.10-20151007-1312Z+dfsg2-3.1) Buster:(2.4.10-20151007-1312Z+dfsg2-3.1~deb10u1) speech recognition scoring toolkit www

  • scythe

    Bullseye:(0.994+git20141017.20d3cff-3) Buster:(0.994+git20141017.20d3cff-1) Bayesian adaptor trimmer for sequencing reads www

  • sdaps

    Bullseye:(1.9.8-0.1+b1) Buster:(1.2.1-2) scripts for data acquisition with paper-based surveys www

  • seaview

    Bullseye:(1:5.0.4-1) Buster:(1:4.7-1) Multiplatform interface for sequence alignment and phylogeny www

  • secrecy

    Bullseye:(0.0.2+dfsg-2) tool to handle libsecrecy keys and encrypted files www

  • seer

    Bullseye:(1.1.4-5) Buster:(1.1.4-2+b1) genomic sequence element (kmer) enrichment analysis www

  • seesat5

    Bullseye & Buster:(0.90.10-1.1) a satellite location program

  • segemehl

    Bullseye:(0.3.4-3) Buster:(0.3.4-1) short read mapping with gaps www

  • segyio-bin

    Bullseye:(1.8.3-1+b2) Buster:(1.8.3-1) SEG-Y read/write library for seismic processing (shell utilities) www

  • sentencepiece

    Bullseye:(0.1.95-1+rpi1) Unsupervised text tokenizer and detokenizer www

  • seqan-apps

    Bullseye:(2.4.0+dfsg-14) Buster:(2.4.0+dfsg-11) C++ library for the analysis of biological sequences www

  • seqcluster

    Bullseye:(1.2.7+ds-1) analysis of small RNA in NGS data www

  • seqkit

    Bullseye:(0.15.0+ds-2) cross-platform and ultrafast toolkit for FASTA/Q file manipulation www

  • seqkit-examples

    Bullseye:(0.15.0+ds-2) examples for seqkit: toolkit for FASTA/Q file manipulation www

  • seqmagick

    Bullseye:(0.8.4-1) Buster:(0.7.0-1) imagemagick-like frontend to Biopython SeqIO www

  • seqprep

    Bullseye:(1.3.2-5) Buster:(1.3.2-3) stripping adaptors and/or merging paired reads of DNA sequences with overlap www

  • seqprep-data

    Bullseye:(1.3.2-5) Buster:(1.3.2-3) example data set for seqprep - only used for testing www

  • seqsero

    Bullseye:(1.0.1+dfsg-4) Buster:(1.0.1+dfsg-1) Salmonella serotyping from genome sequencing data www

  • seqtk

    Bullseye:(1.3-2) Buster:(1.3-1) Fast and lightweight tool for processing sequences in the FASTA or FASTQ format www

  • seriation

    Bullseye:(0.1+git20201220.04e6202-1) finds a suitable linear order for a set of objects www

  • seriation-data

    Bullseye:(0.1+git20201220.04e6202-1) test data for seriation www

  • sextractor

    Bullseye:(2.25.0+ds-3) Buster:(2.19.5+dfsg-6) Dummy transitional package for name change www

  • sga

    Bullseye:(0.10.15-5) Buster:(0.10.15-4) de novo genome assembler that uses string graphs www

  • shapeit4

    Bullseye:(4.2.0+dfsg-1) fast and accurate method for estimation of haplotypes (phasing) www

  • shovill-examples

    Bullseye:(1.1.0-4) Test Data for shovill www

  • sibelia

    Bullseye:(3.0.7+dfsg-3+b1) comparative genomics tool www

  • sibelia-examples

    Bullseye:(3.0.7+dfsg-3) comparative genomics tool (example data) www

  • sibsim4

    Bullseye:(0.20-5) Buster:(0.20-4) align expressed RNA sequences on a DNA template www

  • sickle

    Bullseye:(1.33+git20150314.f3d6ae3-2) Buster:(1.33+git20150314.f3d6ae3-1) windowed adaptive trimming tool for FASTQ files using quality www

  • siconos

    Bullseye:(4.3.1+dfsg-2) modeling and simulation of nonsmooth dynamical systems (simulation runner tool) www

  • siconos-mechanics-tools

    Bullseye:(4.3.1+dfsg-2) modeling and simulation of nonsmooth dynamical systems (mechanics tools) www

  • sigma-align

    Bullseye:(1.1.3-8) Buster:(1.1.3-6) Simple greedy multiple alignment of non-coding DNA sequences www

  • sigviewer

    Bullseye:(0.6.4-1) Buster:(0.6.2-2) GUI viewer for biosignals such as EEG, EMG, and ECG www

  • silx

    Bullseye:(0.14.0+dfsg-1) Buster:(0.9.0+dfsg-3+deb10u1) Toolbox for X-Ray data analysis - Executables www

  • sim4

    Bullseye:(0.0.20121010-8) Buster:(0.0.20121010-5) tool for aligning cDNA and genomic DNA www

  • sim4db

    Bullseye:(0~20150903+r2013-8+b1) Buster:(0~20150903+r2013-6+b3) batch spliced alignment of cDNA sequences to a target genome www

  • simkamin

    Bullseye:(1.5.3-4) approximate comparative metagenomics method dedicated to NGS datasets www

  • simrisc

    Bullseye:(14.02.00-1) simulation model for breast cancer risk www

  • siril

    Bullseye:(0.99.8.1-1) Buster:(0.9.10-2) astronomical image processing tool www

  • siril-common

    Bullseye:(0.99.8.1-1) architecture-independent files for siril www

  • skewer

    Bullseye:(0.2.2-2) post-processing of high-throughput DNA sequence reads www

  • skycat

    Bullseye:(3.1.2+starlink1~b+dfsg-5+b3) Buster:(3.1.2+starlink1~b+dfsg-5+b2) Image visualization and access to catalogs and data for astronomy www

  • slang-xfig

    Bullseye & Buster:(0.2.0~.117-2) produce plots and drawings through Xfig's fig2dev in S-Lang www

  • sleepyhead

    Bullseye:(1.0.0-beta-2+dfsg-7) Buster:(1.0.0-beta-2+dfsg-6) Sleep tracking software with a focus on monitoring CPAP treatment www

  • smalt

    Bullseye:(0.7.6-9) Buster:(0.7.6-8) Sequence Mapping and Alignment Tool www

  • smalt-examples

    Bullseye:(0.7.6-9) Buster:(0.7.6-8) Sequence Mapping and Alignment Tool (examples) www

  • smithwaterman

    Bullseye:(0.0+git20160702.2610e25-11) Buster:(0.0+git20160702.2610e25-7) determine similar regions between two strings or genomic sequences www

  • smrtanalysis

    Bullseye:(0~20210111) Buster:(0~20161126) software suite for single molecule, real-time sequencing www

  • snakemake

    Bullseye:(5.24.1-2) Buster:(5.4.0-1) pythonic workflow management system www

  • snap

    Bullseye:(2013-11-29-11) Buster:(2013-11-29-9) location of genes from DNA sequence with hidden markov model www

  • sniffles

    Bullseye:(1.0.12b+ds-1) Buster:(1.0.11+ds-1) structural variation caller using third-generation sequencing www

  • snp-sites

    Bullseye:(2.5.1-1) Buster:(2.4.1-1) Binary code for the package snp-sites www

  • snpomatic

    Bullseye:(1.0-5) Buster:(1.0-4) fast, stringent short-read mapping software www

  • soapsnp

    Bullseye:(1.03-4) Buster:(1.03-3) resequencing utility that can assemble consensus sequence of genomes www

  • solvate-doc

    Bullseye:(1.0-3) Buster:(1.0-2) Documentation for solvate www

  • source-extractor

    Bullseye:(2.25.0+ds-3) Source extractor for astronomical images www

  • spaced

    Bullseye:(1.2.0-201605+dfsg-2) Buster:(1.2.0-201605+dfsg-1) alignment-free sequence comparison using spaced words www

  • spaln

    Bullseye:(2.4.1+dfsg-3) splicing-aware transcript-alignment to genomic DNA www

  • spaln-data

    Bullseye:(2.4.1+dfsg-3) splicing-aware transcript-alignment to genomic DNA (data) www

  • spass

    Bullseye:(3.9-1.1) Buster:(3.7-4) automated theorem prover for first-order logic with equality www

  • spatialite-bin

    Bullseye:(5.0.1-1) Buster:(4.3.0-2+b3) Geospatial extension for SQLite - tools www

  • splash

    Bullseye:(2.10.1-1) Buster:(2.8.0-1) Visualisation tool for Smoothed Particle Hydrodynamics simulation www

  • spoa

    Bullseye:(4.0.7+ds-1) SIMD partial order alignment tool www

  • sprai

    Bullseye:(0.9.9.23+dfsg1-2) Buster:(0.9.9.23+dfsg-2) single-pass sequencing read accuracy improver www

  • spread-phy

    Bullseye:(1.0.7+dfsg-3) Buster:(1.0.7+dfsg-2) analyze and visualize phylogeographic reconstructions www

  • spview

    Bullseye:(2.0.0~beta2-2) Spectrum Viewer www

  • squizz

    Bullseye:(0.99d+dfsg-3) Buster:(0.99d+dfsg-2) Converter for genetic sequences and alignments www

  • ssake

    Bullseye:(4.0-3) Buster:(4.0-2) genomics application for assembling millions of very short DNA sequences www

  • ssake-examples

    Bullseye:(4.0-3) Buster:(4.0-2) example data for SSAKE, a genomic assembler of short reads www

  • sspace

    Bullseye:(2.1.1+dfsg-5) Buster:(2.1.1+dfsg-4) scaffolding pre-assembled contigs after extension www

  • ssw-align

    Bullseye:(1.1-13) Smith-Waterman aligner based on libssw www

  • stacks

    Bullseye:(2.55+dfsg-1) Buster:(2.2+dfsg-1+b1) pipeline for building loci from short-read DNA sequences www

  • staden

    Bullseye:(2.0.0+b11-4+b1) Buster:(2.0.0+b11-4) DNA sequence assembly (Gap4/Gap5), editing and analysis tools www

  • staden-common

    Bullseye & Buster:(2.0.0+b11-4) Architecture independent files for Staden www

  • staden-io-lib-examples

    Bullseye:(1.14.13-4) Buster:(1.14.11-6) programs for manipulating DNA sequencing files (usage examples) www

  • staden-io-lib-utils

    Bullseye:(1.14.13-4) Buster:(1.14.11-6) programs for manipulating DNA sequencing files www

  • stardata-common

    Bullseye & Buster:(0.8) Common framework to manage astronomy packages www

  • starplot

    Bullseye:(0.95.5-8.3+b1) Buster:(0.95.5-8.3) 3-dimensional perspective star map viewer www

  • starpu-examples

    Bullseye:(1.3.7+dfsg-3) Buster:(1.2.6+dfsg-7) Task scheduler for heterogeneous multicore machines - exs www

  • stellarium

    Bullseye:(0.20.4-3) Buster:(0.18.3-1) real-time photo-realistic sky generator www

  • stellarium-data

    Bullseye:(0.20.4-3) Buster:(0.18.3-1) Stellarium data files www

  • step

    Bullseye:(4:20.12.1-1) Buster:(4:18.08.1-1+b1) interactive physical simulator for KDE www

  • stiff

    Bullseye:(2.4.0-5) Buster:(2.4.0-3) convert scientific FITS images to the TIFF format www

  • stilts

    Bullseye:(3.4-2) Buster:(3.1.5-1) Starlink Tables Infrastructure Library Tool Set www

  • stimfit

    Bullseye:(0.16.0-1+b1) Buster:(0.15.8-1+b1) Program for viewing and analyzing electrophysiological data www

  • stringtie

    Bullseye:(2.1.4+ds-4) assemble short RNAseq reads to transcripts www

  • subread

    Bullseye:(2.0.1+dfsg-1) Buster:(1.6.3+dfsg-1) toolkit for processing next-gen sequencing data www

  • subread-data

    Bullseye:(2.0.1+dfsg-1) Buster:(1.6.3+dfsg-1) data files for subread package www

  • suitename

    Bullseye:(0.3.070919+git20180613.ebb1325-2) Buster:(0.3.070628-2) categorize each suite in an RNA backbone www

  • sumaclust

    Bullseye:(1.0.36+ds-1) Buster:(1.0.31-2) fast and exact clustering of genomic sequences www

  • sumatra

    Bullseye:(1.0.36+ds-1) Buster:(1.0.31-2) fast and exact comparison and clustering of sequences www

  • sumo

    Bullseye:(1.8.0+dfsg2-5) Buster:(1.1.0+dfsg1-1) Simulation of Urban MObility (SUMO) www

  • surankco

    Bullseye:(0.0.r5+dfsg-3) Buster:(0.0.r5+dfsg-2) Supervised Ranking of Contigs in de novo Assemblies www

  • survex

    Bullseye:(1.2.45-1) Buster:(1.2.38-1) cave surveying and mapping software www

  • survex-aven

    Bullseye:(1.2.45-1) Buster:(1.2.38-1) sophisticated cave survey viewer for Survex www

  • survivor

    Bullseye:(1.0.7-2) tool set for simulating/evaluating SVs www

  • svim

    Bullseye:(1.4.2+ds-1) Structural variant caller for long sequencing reads www

  • swarp

    Bullseye:(2.41.4-2) Buster:(2.38.0+dfsg-4) Resample and co-add together FITS images www

  • swe-basic-data

    Bullseye:(1.80.00.0002-1.1) Buster:(1.80.00.0002-1) basic data files for the libswe package www

  • swe-standard-data

    Bullseye:(00004-1.1) Buster:(00004-1) standard data for the Swiss Ephemeris www

  • sweed

    Bullseye:(3.2.1+dfsg-5) Buster:(3.2.1+dfsg-1) assessment of SNPs for their evolutionary advantage www

  • syrthes

    Bullseye:(4.3.5+20200129-dfsg1-1+b1) Buster:(4.3.0-dfsg1-3) Transient thermal simulations in complex solid geometries www

  • syrthes-gui

    Bullseye:(4.3.5+20200129-dfsg1-1) Buster:(4.3.0-dfsg1-3) Transient thermal simulations in complex solid geometries - GUI www

  • syrthes-tests

    Bullseye:(4.3.5+20200129-dfsg1-1) Buster:(4.3.0-dfsg1-3) Test cases for SYRTHES www

  • syrthes-tools

    Bullseye:(4.3.5+20200129-dfsg1-1+b1) Buster:(4.3.0-dfsg1-3) Transient thermal simulations in complex solid geometries - tools www
  • Back to top

  • T

  • t-coffee

    Bullseye:(13.41.0.28bdc39+dfsg-4) Buster:(12.00.7fb08c2-4) Multiple Sequence Alignment www

  • t-coffee-examples

    Bullseye:(13.41.0.28bdc39+dfsg-4) Buster:(12.00.7fb08c2-4) annotated examples for the use of T-Coffee www

  • tabix

    Bullseye:(1.11-4) Buster:(1.9-12~deb10u1) generic indexer for TAB-delimited genome position files www

  • tandem-mass

    Bullseye & Buster:(1:201702011-1) mass spectrometry software for protein identification www

  • tantan

    Bullseye:(23-1) Buster:(22-1) low complexity and tandem repeat masker for biosequences www

  • tcd-utils

    Bullseye & Buster:(20061127-2) convert Tide Constituent Database (TCD) files

  • tclfitsy

    Bullseye:(8.2+repack-2) Tcl FITS Extension www

  • tcliis

    Bullseye:(8.2+repack-2) Buster:(8.0.1+repack-2) Tcl IIS protocol package www

  • teem-apps

    Bullseye:(1.12.0~20160122-4) Buster:(1.12.0~20160122-2) Tools to process and visualize scientific data and images - command line tools www

  • terraintool

    Bullseye:(1.16-3) Buster:(1.13-2) Generates survex/therion terrain models from SRTM/NASADEM data. www

  • theli

    Bullseye:(3.0.5-2) Astronomical image data reduction pipeline www

  • therion

    Bullseye:(5.5.7ds1-2) Buster:(5.4.3ds1-6) Cave surveying - 2D and 3D drawing software www

  • therion-viewer

    Bullseye:(5.5.7ds1-2) Buster:(5.4.3ds1-6) Cave surveying - 3D viewer for therion models www

  • theseus

    Bullseye:(3.3.0-9) Buster:(3.3.0-8) superimpose macromolecules using maximum likelihood www

  • theseus-examples

    Bullseye:(3.3.0-9) Buster:(3.3.0-8) superimpose macromolecules using maximum likelihood (examples) www

  • thesias

    Bullseye:(3.1.1-1) Testing Haplotype Effects In Association Studies www

  • tiddit

    Bullseye:(2.12.0+dfsg-3+b1) structural variant calling www

  • tigr-glimmer

    Bullseye:(3.02b-5) Buster:(3.02b-2) Gene detection in archea and bacteria www

  • timbl

    Bullseye:(6.5-3) Buster:(6.4.13-1) Tilburg Memory Based Learner www

  • timblserver

    Bullseye:(1.14-3) Buster:(1.12-1) Server extensions for Timbl www

  • tksao

    Bullseye:(8.2+repack-2) Buster:(8.0.1+repack-2) Tk widgets for astronomical imaging and data visualization www

  • tm-align

    Bullseye:(20190822+dfsg-2) Buster:(20170708+dfsg-2) structural alignment of proteins www

  • tnseq-transit

    Bullseye:(3.2.1-1) Buster:(2.3.4-1) statistical calculations of essentiality of genes or genomic regions www

  • tombo

    Bullseye:(1.5.1-2+b1) identification of modified nucleotides from raw nanopore sequencing data www

  • topcat

    Bullseye:(4.8-2) Buster:(4.6.2-1) Tool for OPerations on Catalogues And Tables www

  • tophat-recondition

    Bullseye:(1.4-3) post-processor for TopHat unmapped reads www

  • toppic

    Bullseye:(1.3.0+dfsg1-4) Top-down proteoform identification and characterization (programs) www

  • toppic-common

    Bullseye:(1.3.0+dfsg1-4) Top-down proteoform identification and characterization (common data) www

  • toppred

    Bullseye:(1.10-8) Buster:(1.10-7) transmembrane topology prediction www

  • tortoize

    Bullseye:(2.0.1-2) Application to calculate ramachandran z-scores www

  • toulbar2

    Bullseye:(1.1.1+dfsg-1) Buster:(1.0.0+dfsg3-2) Exact combinatorial optimization for Graphical Models www

  • toulbar2-doc

    Bullseye:(1.1.1+dfsg-1) Buster:(1.0.0+dfsg3-2) Exact combinatorial optimization for Graphical Models - documentation www

  • trace2dbest

    Bullseye:(3.0.1-2) Buster:(3.0.1-1) bulk submission of chromatogram data to dbEST www

  • trace2dbest-doc

    Bullseye:(3.0.1-2) Buster:(3.0.1-1) Documentation and sample files for trace2dbest www

  • tracetuner

    Bullseye:(3.0.6~beta+dfsg-3) Buster:(3.0.6~beta+dfsg-1) interpretation of DNA Sanger sequencing data www

  • transcalc

    Bullseye:(0.14-7) Buster:(0.14-6) microwave and RF transmission line calculator www

  • transdecoder

    Bullseye:(5.0.1-3) Buster:(5.0.1-2) find coding regions within RNA transcript sequences www

  • transfuse

    Bullseye:(0.5.7-1) Runs formatted documents through transformations/translation www

  • transrate-tools

    Bullseye:(1.0.0-3) Buster:(1.0.0-2) helper for transrate www

  • transtermhp

    Bullseye:(2.09-5) Buster:(2.09-4) find rho-independent transcription terminators in bacterial genomes www

  • travis

    Bullseye:(200504+hf2-1) Buster:(190101-1) trajectory analyzer and visualizer www

  • tree-ppuzzle

    Bullseye:(5.3~rc16+dfsg-8) Buster:(5.2-11) Parallelized reconstruction of phylogenetic trees by maximum likelihood www

  • tree-puzzle

    Bullseye:(5.3~rc16+dfsg-8) Buster:(5.2-11) Reconstruction of phylogenetic trees by maximum likelihood www

  • treeview

    Bullseye:(1.2.0+dfsg-1) Buster:(1.1.6.4+dfsg1-4) Java re-implementation of Michael Eisen's TreeView www

  • treeviewx

    Bullseye:(0.5.1+git20100823.7e4d0e9-3) Buster:(0.5.1+git20100823.7e4d0e9-1) Displays and prints phylogenetic trees www

  • trf

    Bullseye:(4.09.1-4) locate and display tandem repeats in DNA sequences www

  • trf-examples

    Bullseye:(4.09.1-4) locate and display tandem repeats in DNA sequences (examples) www

  • trim-galore

    Bullseye:(0.6.6-1) automate quality and adapter trimming for DNA sequencing www

  • trimmomatic

    Bullseye:(0.39+dfsg-2) Buster:(0.38+dfsg-1) flexible read trimming tool for Illumina NGS data www

  • trinculo

    Bullseye:(0.96+dfsg-3) toolkit to carry out genetic association for multi-category phenotypes www

  • trinityrnaseq-examples

    Bullseye:(2.11.0+dfsg-6) Buster:(2.6.6+dfsg-6) RNA-Seq De novo Assembly common example and testing files www

  • trnascan-se-common

    Bullseye:(2.0.7+ds-1) Buster:(2.0.0-3) detection of transfer RNA genes in genomic sequence (common files) www

  • tunnelx

    Bullseye:(20190701-1) Buster:(20170928-2) Cave Survey drawing software www

  • tvc

    Bullseye:(5.0.3+git20151221.80e144e+dfsg-3+b3) Buster:(5.0.3+git20151221.80e144e+dfsg-2) genetic variant caller for Ion Torrent sequencing platforms www

  • twms

    Bullseye:(0.07z+git20201202+bb7c3f8-1) Buster:(0.07z-1) tiny web map service www
  • Back to top

  • U

  • ubertooth

    Bullseye:(2018.12.R1-5) Buster:(2018.12.R1-2) 2.4 GHz wireless development platform for Bluetooth experimentation www

  • ubertooth-firmware

    Bullseye:(2018.12.R1-5) Buster:(2018.12.R1-2) Firmware for Ubertooth www

  • ubertooth-firmware-source

    Bullseye:(2018.12.R1-5) Buster:(2018.12.R1-2) Source code for the Ubertooth firmware www

  • uc-echo

    Bullseye:(1.12-15) Buster:(1.12-11) error correction algorithm designed for short-reads from NGS www

  • ucto

    Bullseye:(0.21.1-2+b1) Buster:(0.14-2) Unicode Tokenizer www

  • uctodata

    Bullseye & Buster:(0.8-2) Data files for Ucto www

  • ugene-data

    Bullseye:(34.0+dfsg-2) Buster:(1.31.1+dfsg-1) required data for UGENE - integrated bioinformatics toolkit www

  • uhd-host

    Bullseye:(3.15.0.0-4) Buster:(3.13.1.0-3) universal hardware driver for Ettus Research products - host apps www

  • umap-learn

    Bullseye:(0.4.5+dfsg-2) Uniform Manifold Approximation and Projection www

  • umis

    Bullseye:(1.0.7-1+b1) tools for processing UMI RNA-tag data www

  • umis-examples

    Bullseye:(1.0.7-1) tools for processing UMI RNA-tag data (examples) www

  • uncalled

    Bullseye:(2.2+ds-1) Utility for Nanopore Current Alignment to Large Expanses of DNA www

  • unicycler-data

    Bullseye:(0.4.8+dfsg-2) Buster:(0.4.7+dfsg-2) hybrid assembly pipeline for bacterial genomes (data package) www

  • units-filter

    Bullseye:(4.0-1) Buster:(3.9-1) Parser for expressions concerning physical values

  • urg-utils

    Bullseye & Buster:(0.8.18-2) utilities for Hokuyo URG/UTM laser range scanners
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  • V

  • v-sim

    Bullseye:(3.7.2-8+b2) Buster:(3.7.2-6) Visualize atomic structures www

  • v-sim-common

    Bullseye:(3.7.2-8) Buster:(3.7.2-6) Visualize atomic structures (support files) www

  • v-sim-plugins

    Bullseye:(3.7.2-8+b2) Buster:(3.7.2-6) Plugins for V_Sim (a 3D visualization package) www

  • varna

    Bullseye:(3-93+ds-3) Buster:(3-93+ds-2) Visualization Applet for RNA www

  • vcfanno

    Bullseye:(0.3.2+ds-2) annotate a VCF with other VCFs/BEDs/tabixed files www

  • vcfanno-examples

    Bullseye:(0.3.2+ds-2) examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files www

  • vcftools

    Bullseye:(0.1.16-2) Buster:(0.1.16-1) Collection of tools to work with VCF files www

  • vdjtools

    Bullseye:(1.2.1+git20190311-5) framework for post-analysis of B/T cell repertoires www

  • velvet

    Bullseye:(1.2.10+dfsg1-7) Buster:(1.2.10+dfsg1-5) Nucleic acid sequence assembler for very short reads www

  • velvet-example

    Bullseye:(1.2.10+dfsg1-7) Buster:(1.2.10+dfsg1-5) Example data for the Velvet sequence assembler www

  • velvet-long

    Bullseye:(1.2.10+dfsg1-7) Buster:(1.2.10+dfsg1-5) Nucleic acid sequence assembler for very short reads, long version www

  • velvet-tests

    Bullseye:(1.2.10+dfsg1-7) Buster:(1.2.10+dfsg1-5) Test data for the Velvet sequence assembler www

  • velvetoptimiser

    Bullseye:(2.2.6-3) Buster:(2.2.6-2) automatically optimise Velvet do novo assembly parameters www

  • veusz

    Bullseye:(3.3.1-1) 2D and 3D scientific plotting application with graphical interface www

  • vg-docs

    Bullseye:(1.30.0+ds-1) tools for working with genome variation graphs -- docs www

  • virulencefinder

    Bullseye:(2.0.3+git20190809.dde157a-3) identify virulence genes in total or partial sequenced isolates of bacteria www

  • virulencefinder-examples

    Bullseye:(2.0.3+git20190809.dde157a-3) example data for virulencefinder www

  • visp-images-data

    Bullseye:(3.3.0-1) Buster:(3.2.0-1) visual servoing library - dataset reference files www

  • vistrails

    Bullseye:(3.0~git+9dc22bd-2) Buster:(2.2.4-1) Science visualisation workflow toolkit www

  • vitables

    Bullseye:(3.0.0-1.1) Buster:(2.1-1) graphical tool to browse and edit PyTables and HDF5 files www

  • vmatch

    Bullseye:(2.3.1+dfsg-6) large scale sequence analysis software www

  • voro++

    Bullseye:(0.5+revert-to-0.4.6+dfsg1-1) Buster:(0.4.6+dfsg1-3) library for the computation of the Voronoi diagram www

  • voro++-examples

    Bullseye:(0.5+revert-to-0.4.6+dfsg1-1) Buster:(0.4.6+dfsg1-3) library for the computation of the Voronoi diagram (examples) www

  • voronota

    Bullseye:(1.22.3149-1) Buster:(1.19.2352-1) Voronoi diagram-based tool to find atom contacts www

  • votca-csg

    Bullseye:(1.6.4-1) Buster:(1.5-3) VOTCA's coarse-graining engine www

  • votca-csg-scripts

    Bullseye:(1.6.4-1) Buster:(1.5-3) VOTCA's coarse-graining scripts www

  • votca-csg-tutorials

    Bullseye:(1.6.4-1) Buster:(1.5-3) VOTCA's coarse-graining tutorials www

  • votca-tools

    Bullseye:(1.6.4-1) VOTCA's tools library, helper binaries www

  • votca-xtp

    Bullseye:(1.6.4-1) VOTCA's exciton transport engine www

  • votca-xtp-tutorials

    Bullseye:(1.6.4-1) VOTCA's coarse-graining tutorials www

  • vt

    Bullseye:(0.57721+ds-3) toolset for short variant discovery in genetic sequence data www

  • vt-examples

    Bullseye:(0.57721+ds-3) toolset for short variant discovery in genetic sequence data (examples) www
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  • W

  • wannier90

    Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - executables www

  • wannier90-data

    Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - documentation and examples www

  • wcslib-tools

    Bullseye:(7.4+ds-2) Buster:(6.2-2) Command line tools utilizing wcslib www

  • wcstools

    Bullseye:(3.9.6-1) Buster:(3.9.5-3) Handle the WCS of a FITS image www

  • weightwatcher

    Bullseye:(1.12+dfsg-2) Buster:(1.12+dfsg-1) Combine maps and polygon data for astronomical image processing www

  • weka

    Bullseye:(3.6.14-2) Buster:(3.6.14-1) Machine learning algorithms for data mining tasks www

  • wham-align

    Bullseye:(0.1.5-8) Wisconsin's High-Throughput Alignment Method www

  • wigeon

    Bullseye:(20101212+dfsg1-4) Buster:(20101212+dfsg1-2) reimplementation of the Pintail 16S DNA anomaly detection utility www

  • wise

    Bullseye:(2.4.1-23) Buster:(2.4.1-21) comparison of biopolymers, like DNA and protein sequences www

  • worldwind

    Bullseye & Buster:(0.5.0-10) 3D Virtual Globe www

  • wsclean

    Bullseye:(2.10.1-1+b1) Buster:(2.6-1+b3) Fast generic widefield interferometric imager www

  • wtdbg2

    Bullseye:(2.5-7) de novo sequence assembler for long noisy reads www

  • wtdbg2-examples

    Bullseye:(2.5-7) Examples for wtdbg - de novo sequence assembler www

  • wxastrocapture

    Bullseye:(1.8.1+git20140821.796e1a1+dfsg-1) Buster:(1.8.1+git20140821+dfsg-2) Windows linuX Astronomy Capture www
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  • X

  • xbs

    Bullseye & Buster:(0-10) 3-d models and movies of molecules

  • xcas

    Bullseye:(1.6.0.41+dfsg1-1) Buster:(1.4.9.69+dfsg1-2) Computer Algebra System - console and graphical calculator www

  • xcrysden

    Bullseye:(1.6.2-4) Crystalline and Molecular Structure Visualizer www

  • xcrysden-data

    Bullseye:(1.6.2-4) Crystalline and Molecular Structure Visualizer (Data Files) www

  • xdrawchem

    Bullseye:(1:1.11.0-2) Buster:(1:1.10.2.1-2) Chemical structures and reactions editor

  • xeus-python-dev

    Bullseye:(0.9.5-1) Native jupyter kernel for python (headers) www

  • xfoil

    Bullseye & Buster:(6.99.dfsg+1-1) program for the design and analysis of subsonic airfoils www

  • xgboost

    Bullseye:(1.2.1-1) Scalable and Flexible Gradient Boosting (Executable) www

  • xgterm

    Bullseye:(2.0+2020.06.15+dfsg-1) Terminal emulator to work with IRAF www

  • ximtool

    Bullseye:(2.0+2020.06.15+dfsg-1) Interactive image display program for the X Window System www

  • xmakemol

    Bullseye:(5.16-10) Buster:(5.16-9) program for visualizing atomic and molecular systems www

  • xmakemol-gl

    Bullseye:(5.16-10) Buster:(5.16-9) program for visualizing atomic and molecular systems (OpenGL) www

  • xmds

    Bullseye & Buster:(1.6.6-7) eXtensible Multi-Dimensional Simulator www

  • xmds2

    Bullseye:(3.0.0+dfsg-5) Buster:(2.2.3+dfsg-15) eXtensible Multi-Dimensional Simulator www

  • xmpsolve

    Bullseye:(3.2.1-2) Multiprecision polynomial solver (graphical version) www

  • xpa-tools

    Bullseye:(2.1.20-1) Buster:(2.1.18-4+rpi1) Tools for seamless communication between Unix programs www

  • xplot

    Bullseye & Buster:(1.19-9) simple on-screen x-y column data plotter

  • xplot-xplot.org

    Bullseye & Buster:(0.90.7.1-4) fast tool to graph and visualize lots of data www

  • xppaut

    Bullseye:(6.11b+1.dfsg-1.1) Buster:(6.11b+1.dfsg-1) Phase Plane Plus Auto: Solves many kinds of equations www

  • xpython

    Bullseye:(0.9.5-1) Native jupyter kernel for python (binary) www

  • xtide

    Bullseye:(2.15.2-1) Buster:(2.13.2-1+b1) provides tide and current predictions www

  • xtide-coastline

    Bullseye:(20020202-1.1) Buster:(20020202-1) coastline data for xtide

  • xtide-data

    Bullseye:(20191229-1) Buster:(20100529-1) Harmonics data for xtide www

  • xtide-data-nonfree

    Bullseye & Buster:(20100529-1) Harmonics data for xtide (Canada, Netherlands, Germany and UK) www

  • xtpcpp

    Bullseye:(0.4.18-1) C++ version of X!TandemPipeline www

  • xyscan

    Bullseye:(4.50-1) Buster:(4.30-2+b2) data thief for scientists www
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  • Y

  • yagv

    Bullseye:(0.4~20171211.r234ef16+dfsg-2) Buster:(0.4~20130422.r5bd15ed+dfsg-4) yet another G-code viewer www

  • yaha

    Bullseye:(0.1.83-2) Buster:(0.1.83-1) find split-read mappings on single-end queries www

  • yale

    Bullseye & Buster:(5.0.95-2) stellar data set from the Yale Bright Star Catalog www

  • yanagiba

    Bullseye:(1.0.0-2) filter low quality Oxford Nanopore reads basecalled with Albacore www

  • yanosim

    Bullseye:(0.1-3) read simulator nanopore DRS datasets www

  • yorick

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) interpreted language and scientific graphics www

  • yorick-av

    Bullseye & Buster:(0.0.5-1+b1) write movies from Yorick in various formats www

  • yorick-cubeview

    Bullseye:(2.2-2.1) Buster:(2.2-2) 3D FITS data viewer specialized in spectro-imaging www

  • yorick-curses

    Bullseye & Buster:(0.1-6) interface to the (n)curses library for the Yorick language

  • yorick-data

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) interpreted library for the Yorick language www

  • yorick-dev

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) development files for the Yorick interpreted language www

  • yorick-gl

    Bullseye & Buster:(1.1+cvs20070922+dfsg-6.1) OpenGL 3D graphics support for the Yorick language www

  • yorick-gy

    Bullseye & Buster:(0.0.5-1) GObject introspection and Gtk bindings for Yorick www

  • yorick-gyoto

    Bullseye:(1.4.4-3+b6) Buster:(1.3.1-1+b1) General relativistic geodesic integration for the Yorick language www

  • yorick-hdf5

    Bullseye:(0.8.0-8+b2) Buster:(0.8.0-8+b1) Hierarchical Data Format 5 interface for the Yorick language

  • yorick-imutil

    Bullseye & Buster:(0.5.7-3) fast image manipulation routines for the Yorick language

  • yorick-mira

    Bullseye & Buster:(1.1.0+git20170124.3bd1c3~dfsg1-2) optical interferometry image reconstruction within Yorick www

  • yorick-ml4

    Bullseye & Buster:(0.6.0-3) Matlab file format support for the Yorick language

  • yorick-mpeg

    Bullseye & Buster:(0.1-3) MPEG output support for the Yorick language www

  • yorick-mpy-common

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) Message Passing Yorick (common files) www

  • yorick-mpy-mpich2

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) Message Passing Yorick (MPICH2 build) www

  • yorick-mpy-openmpi

    Bullseye:(2.2.04+dfsg1-12) Buster:(2.2.04+dfsg1-10) Message Passing Yorick (OpenMPI build) www

  • yorick-optimpack

    Bullseye & Buster:(1.3.2+dfsg+1.4.0-1) optimization of large scale problems for the Yorick language www

  • yorick-soy

    Bullseye & Buster:(1.4.0-3) sparse matrix operations for the Yorick language www

  • yorick-svipc

    Bullseye:(0.16-5+b2) Buster:(0.16-3) interprocess communication (shared memory...) for Yorick www

  • yorick-yeti

    Bullseye & Buster:(6.4.0-1) utility plugin for the Yorick language www

  • yorick-yeti-fftw

    Bullseye & Buster:(6.4.0-1) FFT plugin for the Yorick language www

  • yorick-yeti-regex

    Bullseye & Buster:(6.4.0-1) POSIX regular expressions for the Yorick language www

  • yorick-yeti-tiff

    Bullseye & Buster:(6.4.0-1) TIFF image format input for the Yorick language www

  • yorick-ygsl

    Bullseye:(1.2.1-1+b3) Buster:(1.2.1-1+b2) GSL special functions plugin for the Yorick language www

  • yorick-ynfft

    Bullseye & Buster:(1.0.3-1) nonequispaced fast Fourier transform for Yorick www

  • yorick-yutils

    Bullseye:(1.5.2-1.1) Buster:(1.5.2-1) various utilities for the Yorick language

  • yorick-z

    Bullseye:(1.2.0+cvs20080115-5+b1) Buster:(1.2.0+cvs20080115-5) zlib, jpeg and png support for the Yorick language www
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  • Z

  • z3

    Bullseye:(4.8.10-1) Buster:(4.4.1-1~deb10u1) theorem prover from Microsoft Research www

  • z88

    Bullseye & Buster:(13.0.0+dfsg2-6) Finite Element Analysis Program - runtime www

  • z88-data

    Bullseye & Buster:(13.0.0+dfsg2-6) Finite Element Analysis Program - data www

  • zalign

    Bullseye:(0.9.1-5) Buster:(0.9.1-4) parallel local alignment of biological sequences www

  • zegrapher

    Bullseye:(3.1.1-1) Buster:(3.0.2-1) plotting mathematical functions and sequences on the plane www

  • zimpl

    Bullseye:(3.3.6-4) Buster:(3.3.6-1) mathematical modeling language for optimization problems www

  • ztex-bmp

    Bullseye & Buster:(20120314-2) universal macro processor www

Packages Types